2020-09-01T15:42:35,447 Created temporary directory: /tmp/pip-ephem-wheel-cache-kzexqi9n
2020-09-01T15:42:35,454 Created temporary directory: /tmp/pip-req-tracker-xoedk36n
2020-09-01T15:42:35,455 Initialized build tracking at /tmp/pip-req-tracker-xoedk36n
2020-09-01T15:42:35,455 Created build tracker: /tmp/pip-req-tracker-xoedk36n
2020-09-01T15:42:35,456 Entered build tracker: /tmp/pip-req-tracker-xoedk36n
2020-09-01T15:42:35,457 Created temporary directory: /tmp/pip-wheel-i1cermcm
2020-09-01T15:42:35,493 1 location(s) to search for versions of biocode:
2020-09-01T15:42:35,493 * https://pypi.org/simple/biocode/
2020-09-01T15:42:35,494 Fetching project page and analyzing links: https://pypi.org/simple/biocode/
2020-09-01T15:42:35,496 Getting page https://pypi.org/simple/biocode/
2020-09-01T15:42:35,501 Found index url https://pypi.org/simple
2020-09-01T15:42:35,851   Found link https://files.pythonhosted.org/packages/e1/6d/8b417c8c08f02c960801f360bc8b38927a4c14dfee8cb1418978bdfc4946/biocode-0.1.0.tar.gz#sha256=98fb4d531f0a3d940f3f30a71c0c9a59e89063c30eefcbaa3032ed4c8e8eb7ad (from https://pypi.org/simple/biocode/), version: 0.1.0
2020-09-01T15:42:35,852   Found link https://files.pythonhosted.org/packages/96/e5/314879e7d54bee7e0ed6db1fc358d193ae2d118e4825a99d14f3269a9322/biocode-0.1.1.tar.gz#sha256=76bdb70852fc5e7a83f19de8e66074de97bace873dea6a3014b49f4305736fb0 (from https://pypi.org/simple/biocode/), version: 0.1.1
2020-09-01T15:42:35,853   Found link https://files.pythonhosted.org/packages/4e/94/c999970e61e13f3082eae7989bc32d745ef7d846824252dd9a3c09cfd19c/biocode-0.1.2.tar.gz#sha256=d72e37b2f0cefc2081b0888b603d39cf572382b5d966586390e02cb09b708cc9 (from https://pypi.org/simple/biocode/), version: 0.1.2
2020-09-01T15:42:35,854   Found link https://files.pythonhosted.org/packages/a5/2c/85a52abaf0192795d5fbc56842c58c349bc6b58c568b4b913b8fdf591617/biocode-0.1.3.tar.gz#sha256=ec904f8ddd1458821e75e8d2fffa08b2a7dee98c02bec8e5463f55997dda2fb1 (from https://pypi.org/simple/biocode/), version: 0.1.3
2020-09-01T15:42:35,855   Found link https://files.pythonhosted.org/packages/a5/06/562772ff9d04bcfcde87ed1ce76026eaf8f6b15cf7336fc6334bad04db00/biocode-0.1.4.tar.gz#sha256=603bf7f95b963b13a70cddb848e41953897e6ec38bbd9afed918667881190745 (from https://pypi.org/simple/biocode/), version: 0.1.4
2020-09-01T15:42:35,856   Found link https://files.pythonhosted.org/packages/27/c6/cdb7baa2821259f68c059a9e7385d613b817d90c00c8e727df7d3da23d2e/biocode-0.1.5.tar.gz#sha256=a9d3a7c9214b2625e44a0299c132e349279cd6b355c4ad30992aacdb27f123d6 (from https://pypi.org/simple/biocode/), version: 0.1.5
2020-09-01T15:42:35,857   Found link https://files.pythonhosted.org/packages/5d/ff/bda52fd80d3696809f96b27e1df816809c610a91587199fbb5611a82ff48/biocode-0.2.0.tar.gz#sha256=9b0e58ba93cb841d9f214c010d46e40c2c09a941a3f43874b58564abe357ccfd (from https://pypi.org/simple/biocode/), version: 0.2.0
2020-09-01T15:42:35,857   Found link https://files.pythonhosted.org/packages/4b/d4/61d22deda78a8fb9b998ac1a7e7fee95eb3e84adcb26ab1705fda8235d31/biocode-0.3.0.tar.gz#sha256=8d210b1a7ae16d60964df9a92d0e92eda846e7fca2c01f6add5105d6f26691d3 (from https://pypi.org/simple/biocode/), version: 0.3.0
2020-09-01T15:42:35,858   Found link https://files.pythonhosted.org/packages/9e/04/4a879cb84c7d4d8a11b9812e25668e5f1d4ef5e3cea429f7cc8202a0021b/biocode-0.3.1.tar.gz#sha256=aac38e473e1f4712d85db957f8b92caf980522c748d438ca3ef2597cab586f20 (from https://pypi.org/simple/biocode/), version: 0.3.1
2020-09-01T15:42:35,859   Found link https://files.pythonhosted.org/packages/72/af/9de76d7a8ae1cc6912488e33e53df8145aac259d36ddd42fc3dc803ea473/biocode-0.4.0.tar.gz#sha256=7e5c9d20368f8a7fdd8446e56b9d325a2e7d890cd5c76cc1f90740665a3886d8 (from https://pypi.org/simple/biocode/), version: 0.4.0
2020-09-01T15:42:35,860   Found link https://files.pythonhosted.org/packages/c7/93/31d3a353be167da9500e2bdff93451dba1a6a134e425767d426e297a0853/biocode-0.4.1.tar.gz#sha256=e5e17c522d8372246038b2d2b77ce112a38c9eb2770f3fba28bcfda4e2bfed10 (from https://pypi.org/simple/biocode/), version: 0.4.1
2020-09-01T15:42:35,861   Found link https://files.pythonhosted.org/packages/7a/24/cae23280630c49008e96590c77494485e47bbcf488f5c4b4e03ecc7b1e29/biocode-0.4.2.tar.gz#sha256=d49e59cc384507d62a7e379c6f21a6598262677ca9d50f98e47503e495a901ea (from https://pypi.org/simple/biocode/), version: 0.4.2
2020-09-01T15:42:35,862   Found link https://files.pythonhosted.org/packages/7f/5a/0d11038818cc78cee863d20da8a16a9907c20be8bfa8334ebabec4cb37e4/biocode-0.4.4.tar.gz#sha256=078dc61603ae5fe6944f271f8625f06779c884b9428154315c1cbc1dcd7c606f (from https://pypi.org/simple/biocode/), version: 0.4.4
2020-09-01T15:42:35,863   Found link https://files.pythonhosted.org/packages/43/8e/107a8d911b7af9db94a561f6740801f62b69a60cb8857fc6642268f0d99d/biocode-0.4.5.tar.gz#sha256=bca0bac61eb6ba3da8df7d2826edd314e3351df73b272df4db17e83b3881d5ea (from https://pypi.org/simple/biocode/), version: 0.4.5
2020-09-01T15:42:35,864   Found link https://files.pythonhosted.org/packages/02/e7/dc62a42fcfcb2288f397789f6bc83fd40a815d495edba4fa79e14759935c/biocode-0.4.7.tar.gz#sha256=8cfa6c8edbd1a65b03178d12f1941cb159d210a534447226846cc8ae4ad47148 (from https://pypi.org/simple/biocode/), version: 0.4.7
2020-09-01T15:42:35,865   Found link https://files.pythonhosted.org/packages/f2/fc/483f6dad337423c04dc8a1b2756c3e5326e9381648e5560eb602a4f83413/biocode-0.5.0.tar.gz#sha256=a96f0e2c3bde3e42f82590de9ce1be0e8782b50c9a58296bc3e872161fb3a3a3 (from https://pypi.org/simple/biocode/), version: 0.5.0
2020-09-01T15:42:35,866   Found link https://files.pythonhosted.org/packages/5c/b7/035e01334320dd66ac8c65be4baa910e8cb16215c563d7b65bfdfd5b56d6/biocode-0.5.1.tar.gz#sha256=ca80071c7e495380a875714ac7cf975dc20389ab8e36f72971a59f6e5a5ac83e (from https://pypi.org/simple/biocode/), version: 0.5.1
2020-09-01T15:42:35,866   Found link https://files.pythonhosted.org/packages/95/f7/e7ac262a9e90ac52d889c0a832aa8276b95fb6c23d0c65bf32fc2ccc1c7a/biocode-0.5.2.tar.gz#sha256=53cfdf987543f82bca9ccd37fa6aade4f257601f18d79b9ebd4dd924d55e5d01 (from https://pypi.org/simple/biocode/), version: 0.5.2
2020-09-01T15:42:35,867   Found link https://files.pythonhosted.org/packages/3b/2d/43287226a16b06ecdf7ed706752de718042382513bf2a3a5b0c9d2a41222/biocode-0.5.3.tar.gz#sha256=446811c773f4a93604591130ab64cdf30ddb26810a468b68588876985cc44003 (from https://pypi.org/simple/biocode/), version: 0.5.3
2020-09-01T15:42:35,868   Found link https://files.pythonhosted.org/packages/b3/e7/e8b3bd627d57954933c9c5a79bbdf28ad93073cc0792c61f71e3777f44d8/biocode-0.6.0.tar.gz#sha256=194619f6945592ac8795cebb80d2734b5e30ad85dc4cc5f5cf3365f9fc13491e (from https://pypi.org/simple/biocode/), version: 0.6.0
2020-09-01T15:42:35,869   Found link https://files.pythonhosted.org/packages/dd/d7/73e00082816c193207ea58420b38ac0a4041d345b8617f0d15501367c080/biocode-0.7.0.tar.gz#sha256=6f1f1ddb5e72687c18ae968414bb9c5b9003869b1bb5d8b69acb4f863bccffe8 (from https://pypi.org/simple/biocode/), version: 0.7.0
2020-09-01T15:42:35,870   Found link https://files.pythonhosted.org/packages/bb/7a/c073ca257a937286fec9e225190fa55c66a46132708e8dfa13569ef0cc37/biocode-0.7.1.tar.gz#sha256=98583da45aa2fb3258f676fd02cbd421b5dbf38ecac9f062a44157222671bb8b (from https://pypi.org/simple/biocode/), version: 0.7.1
2020-09-01T15:42:35,871   Found link https://files.pythonhosted.org/packages/a3/b5/0a5b44de28177113d5bbc0a8b510ea6e9acf82184b1e1ad5303357d1caa5/biocode-0.8.0.tar.gz#sha256=9ac96ea8d68d3770c815e91201080ef13485e550f42f2c955fb21df57384952b (from https://pypi.org/simple/biocode/), version: 0.8.0
2020-09-01T15:42:35,872   Found link https://files.pythonhosted.org/packages/ac/58/b16f07e13b99403a0069b7782dc963882f634b6863d6e4bba85d327bd634/biocode-0.9.0.tar.gz#sha256=3e8ef89dc0a699ed4f735563009a5e329c8101c60e23c21135ebb6ef9b44d3b8 (from https://pypi.org/simple/biocode/), version: 0.9.0
2020-09-01T15:42:35,873   Found link https://files.pythonhosted.org/packages/60/4d/1ede29387210a62ff0c6ccbb1c467e94890fb1a5802a2a3b3d37df3997cb/biocode-0.10.0.tar.gz#sha256=ab48e0ea92f52c7fe48c6c947d4d5aa43437f16cd42a804546c71ef0e5ba2265 (from https://pypi.org/simple/biocode/), version: 0.10.0
2020-09-01T15:42:35,893 Given no hashes to check 1 links for project 'biocode': discarding no candidates
2020-09-01T15:42:35,896 Using version 0.10.0 (newest of versions: 0.10.0)
2020-09-01T15:42:35,905 Collecting biocode==0.10.0
2020-09-01T15:42:35,910   Created temporary directory: /tmp/pip-unpack-x4jev1zi
2020-09-01T15:42:36,525   Downloading biocode-0.10.0.tar.gz (6.5 MB)
2020-09-01T15:42:44,681   Added biocode==0.10.0 from https://files.pythonhosted.org/packages/60/4d/1ede29387210a62ff0c6ccbb1c467e94890fb1a5802a2a3b3d37df3997cb/biocode-0.10.0.tar.gz#sha256=ab48e0ea92f52c7fe48c6c947d4d5aa43437f16cd42a804546c71ef0e5ba2265 to build tracker '/tmp/pip-req-tracker-xoedk36n'
2020-09-01T15:42:44,684     Running setup.py (path:/tmp/pip-wheel-i1cermcm/biocode/setup.py) egg_info for package biocode
2020-09-01T15:42:44,685     Created temporary directory: /tmp/pip-pip-egg-info-jznbo7vz
2020-09-01T15:42:44,686     Running command python setup.py egg_info
2020-09-01T15:42:47,251     running egg_info
2020-09-01T15:42:47,257     creating /tmp/pip-pip-egg-info-jznbo7vz/biocode.egg-info
2020-09-01T15:42:47,259     writing requirements to /tmp/pip-pip-egg-info-jznbo7vz/biocode.egg-info/requires.txt
2020-09-01T15:42:47,264     writing /tmp/pip-pip-egg-info-jznbo7vz/biocode.egg-info/PKG-INFO
2020-09-01T15:42:47,271     writing dependency_links to /tmp/pip-pip-egg-info-jznbo7vz/biocode.egg-info/dependency_links.txt
2020-09-01T15:42:47,273     writing top-level names to /tmp/pip-pip-egg-info-jznbo7vz/biocode.egg-info/top_level.txt
2020-09-01T15:42:47,277     writing manifest file '/tmp/pip-pip-egg-info-jznbo7vz/biocode.egg-info/SOURCES.txt'
2020-09-01T15:42:47,747     reading manifest file '/tmp/pip-pip-egg-info-jznbo7vz/biocode.egg-info/SOURCES.txt'
2020-09-01T15:42:47,757     reading manifest template 'MANIFEST.in'
2020-09-01T15:42:47,783     writing manifest file '/tmp/pip-pip-egg-info-jznbo7vz/biocode.egg-info/SOURCES.txt'
2020-09-01T15:42:47,931   Source in /tmp/pip-wheel-i1cermcm/biocode has version 0.10.0, which satisfies requirement biocode==0.10.0 from https://files.pythonhosted.org/packages/60/4d/1ede29387210a62ff0c6ccbb1c467e94890fb1a5802a2a3b3d37df3997cb/biocode-0.10.0.tar.gz#sha256=ab48e0ea92f52c7fe48c6c947d4d5aa43437f16cd42a804546c71ef0e5ba2265
2020-09-01T15:42:47,933   Removed biocode==0.10.0 from https://files.pythonhosted.org/packages/60/4d/1ede29387210a62ff0c6ccbb1c467e94890fb1a5802a2a3b3d37df3997cb/biocode-0.10.0.tar.gz#sha256=ab48e0ea92f52c7fe48c6c947d4d5aa43437f16cd42a804546c71ef0e5ba2265 from build tracker '/tmp/pip-req-tracker-xoedk36n'
2020-09-01T15:42:47,942 Building wheels for collected packages: biocode
2020-09-01T15:42:47,951   Created temporary directory: /tmp/pip-wheel-9j7fchog
2020-09-01T15:42:47,953   Building wheel for biocode (setup.py): started
2020-09-01T15:42:47,954   Destination directory: /tmp/pip-wheel-9j7fchog
2020-09-01T15:42:47,955   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-i1cermcm/biocode/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-i1cermcm/biocode/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-9j7fchog
2020-09-01T15:42:50,330   running bdist_wheel
2020-09-01T15:42:50,345   running build
2020-09-01T15:42:50,346   running build_py
2020-09-01T15:42:50,709   creating build
2020-09-01T15:42:50,711   creating build/lib
2020-09-01T15:42:50,714   creating build/lib/biocode
2020-09-01T15:42:50,717   copying biocode/utils.py -> build/lib/biocode
2020-09-01T15:42:50,723   copying biocode/tbl.py -> build/lib/biocode
2020-09-01T15:42:50,729   copying biocode/bed.py -> build/lib/biocode
2020-09-01T15:42:50,734   copying biocode/gff.py -> build/lib/biocode
2020-09-01T15:42:50,748   copying biocode/genbank.py -> build/lib/biocode
2020-09-01T15:42:50,754   copying biocode/annotation.py -> build/lib/biocode
2020-09-01T15:42:50,760   copying biocode/things.py -> build/lib/biocode
2020-09-01T15:42:50,770   copying biocode/__init__.py -> build/lib/biocode
2020-09-01T15:42:50,774   copying biocode/ncbigff.py -> build/lib/biocode
2020-09-01T15:42:50,780   running egg_info
2020-09-01T15:42:50,814   writing biocode.egg-info/PKG-INFO
2020-09-01T15:42:50,820   writing requirements to biocode.egg-info/requires.txt
2020-09-01T15:42:50,822   writing dependency_links to biocode.egg-info/dependency_links.txt
2020-09-01T15:42:50,825   writing top-level names to biocode.egg-info/top_level.txt
2020-09-01T15:42:50,839   reading manifest file 'biocode.egg-info/SOURCES.txt'
2020-09-01T15:42:50,849   reading manifest template 'MANIFEST.in'
2020-09-01T15:42:50,871   writing manifest file 'biocode.egg-info/SOURCES.txt'
2020-09-01T15:42:50,881   creating build/lib/biocode/data
2020-09-01T15:42:50,883   copying biocode/data/HMPslim.v2.1.obo -> build/lib/biocode/data
2020-09-01T15:42:50,895   copying biocode/data/__init__.py -> build/lib/biocode/data
2020-09-01T15:42:50,899   copying biocode/data/biocode_script_index.json -> build/lib/biocode/data
2020-09-01T15:42:50,907   copying biocode/data/genbank_flat_file_header.template -> build/lib/biocode/data
2020-09-01T15:42:50,911   copying biocode/data/go.obo -> build/lib/biocode/data
2020-09-01T15:42:54,292   copying biocode/data/go.pickle -> build/lib/biocode/data
2020-09-01T15:42:54,811   copying biocode/data/rsem_html_table.template -> build/lib/biocode/data
2020-09-01T15:42:54,821   running build_scripts
2020-09-01T15:42:54,823   creating build/scripts-3.5
2020-09-01T15:42:54,827   copying and adjusting bin/append_to_column_9_value.py -> build/scripts-3.5
2020-09-01T15:42:54,832   copying and adjusting bin/prepend_to_fasta_header.py -> build/scripts-3.5
2020-09-01T15:42:54,836   copying and adjusting bin/download_assemblies_from_genbank.py -> build/scripts-3.5
2020-09-01T15:42:54,842   copying and adjusting bin/convert_augustus_to_gff3.py -> build/scripts-3.5
2020-09-01T15:42:54,847   copying and adjusting bin/convert_gff3_to_ncbi_tbl.py -> build/scripts-3.5
2020-09-01T15:42:54,851   copying and adjusting bin/mark_partial_genes.py -> build/scripts-3.5
2020-09-01T15:42:54,856   copying and adjusting bin/filter_fasta_by_abundance.py -> build/scripts-3.5
2020-09-01T15:42:54,860   copying and adjusting bin/validate_feature_boundaries_on_molecules.py -> build/scripts-3.5
2020-09-01T15:42:54,864   copying and adjusting bin/add_polypeptide_to_gff3_gene_models.py -> build/scripts-3.5
2020-09-01T15:42:54,869   copying and adjusting bin/select_training_and_evaluation_transcripts.py -> build/scripts-3.5
2020-09-01T15:42:54,874   copying and adjusting bin/filter_fasta_by_type.py -> build/scripts-3.5
2020-09-01T15:42:54,878   copying and adjusting bin/filter_uniref_by_taxonomy.py -> build/scripts-3.5
2020-09-01T15:42:54,882   copying and adjusting bin/remove_orphaned_features.py -> build/scripts-3.5
2020-09-01T15:42:54,887   copying and adjusting bin/convert_blast_btab_to_bed.py -> build/scripts-3.5
2020-09-01T15:42:54,893   copying and adjusting bin/replace_gff_type_column_value.py -> build/scripts-3.5
2020-09-01T15:42:54,898   copying and adjusting bin/convert_blast_btab_to_gff3.py -> build/scripts-3.5
2020-09-01T15:42:54,904   copying and adjusting bin/interleave_fastq.py -> build/scripts-3.5
2020-09-01T15:42:54,908   copying and adjusting bin/split_isoforms_into_individual_genes.py -> build/scripts-3.5
2020-09-01T15:42:54,912   copying and adjusting bin/make_cufflinks_ids_unique.py -> build/scripts-3.5
2020-09-01T15:42:54,915   copying and adjusting bin/convert_gff3_to_gbk.py -> build/scripts-3.5
2020-09-01T15:42:54,920   copying and adjusting bin/make_go_slim_index.py -> build/scripts-3.5
2020-09-01T15:42:54,927   copying and adjusting bin/eggnog_to_sqlite3.py -> build/scripts-3.5
2020-09-01T15:42:54,933   copying and adjusting bin/convert_metagenemark_gff_to_gff3.py -> build/scripts-3.5
2020-09-01T15:42:54,940   copying and adjusting bin/append_to_fasta_header.py -> build/scripts-3.5
2020-09-01T15:42:54,945   copying and adjusting bin/merge_bam_files.py -> build/scripts-3.5
2020-09-01T15:42:54,950   copying and adjusting bin/remove_masked_gene_models.py -> build/scripts-3.5
2020-09-01T15:42:54,955   copying and adjusting bin/filter_fastq_by_N_content.py -> build/scripts-3.5
2020-09-01T15:42:54,962   copying and adjusting bin/uniref_to_sqlite3.py -> build/scripts-3.5
2020-09-01T15:42:54,969   copying and adjusting bin/uniprot_sprot_to_sqlite3.py -> build/scripts-3.5
2020-09-01T15:42:54,976   copying and adjusting bin/reverse_misordered_cds_coords.py -> build/scripts-3.5
2020-09-01T15:42:54,981   copying and adjusting bin/update_selected_column9_values.py -> build/scripts-3.5
2020-09-01T15:42:54,987   copying and adjusting bin/convert_gff3_to_gene_association_format.py -> build/scripts-3.5
2020-09-01T15:42:54,992   copying and adjusting bin/interleave_fasta.py -> build/scripts-3.5
2020-09-01T15:42:54,995   copying and adjusting bin/make_go_slim.py -> build/scripts-3.5
2020-09-01T15:42:55,001   copying and adjusting bin/join_columnar_files.py -> build/scripts-3.5
2020-09-01T15:42:55,005   copying and adjusting bin/split_interleaved_sequence_file.py -> build/scripts-3.5
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2020-09-01T15:42:55,344   changing mode of build/scripts-3.5/append_to_column_9_value.py from 644 to 755
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2020-09-01T15:42:55,374   changing mode of build/scripts-3.5/convert_cufflinks_gtf_to_gff3.py from 644 to 755
2020-09-01T15:42:55,375   changing mode of build/scripts-3.5/list_biocode.py from 644 to 755
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2020-09-01T15:42:55,426   installing to build/bdist.linux-armv7l/wheel
2020-09-01T15:42:55,427   running install
2020-09-01T15:42:55,427   running install_lib
2020-09-01T15:42:55,428   creating build/bdist.linux-armv7l
2020-09-01T15:42:55,429   creating build/bdist.linux-armv7l/wheel
2020-09-01T15:42:55,431   creating build/bdist.linux-armv7l/wheel/biocode
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2020-09-01T15:42:55,450   creating build/bdist.linux-armv7l/wheel/biocode/data
2020-09-01T15:42:55,452   copying build/lib/biocode/data/rsem_html_table.template -> build/bdist.linux-armv7l/wheel/biocode/data
2020-09-01T15:42:55,459   copying build/lib/biocode/data/go.pickle -> build/bdist.linux-armv7l/wheel/biocode/data
2020-09-01T15:42:55,985   copying build/lib/biocode/data/HMPslim.v2.1.obo -> build/bdist.linux-armv7l/wheel/biocode/data
2020-09-01T15:42:55,995   copying build/lib/biocode/data/biocode_script_index.json -> build/bdist.linux-armv7l/wheel/biocode/data
2020-09-01T15:42:56,001   copying build/lib/biocode/data/genbank_flat_file_header.template -> build/bdist.linux-armv7l/wheel/biocode/data
2020-09-01T15:42:56,006   copying build/lib/biocode/data/__init__.py -> build/bdist.linux-armv7l/wheel/biocode/data
2020-09-01T15:42:56,010   copying build/lib/biocode/data/go.obo -> build/bdist.linux-armv7l/wheel/biocode/data
2020-09-01T15:42:59,401   copying build/lib/biocode/gff.py -> build/bdist.linux-armv7l/wheel/biocode
2020-09-01T15:42:59,410   copying build/lib/biocode/genbank.py -> build/bdist.linux-armv7l/wheel/biocode
2020-09-01T15:42:59,417   copying build/lib/biocode/annotation.py -> build/bdist.linux-armv7l/wheel/biocode
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2020-09-01T15:42:59,440   copying build/lib/biocode/ncbigff.py -> build/bdist.linux-armv7l/wheel/biocode
2020-09-01T15:42:59,445   running install_egg_info
2020-09-01T15:42:59,463   Copying biocode.egg-info to build/bdist.linux-armv7l/wheel/biocode-0.10.0-py3.5.egg-info
2020-09-01T15:42:59,497   running install_scripts
2020-09-01T15:42:59,659   creating build/bdist.linux-armv7l/wheel/biocode-0.10.0.data
2020-09-01T15:42:59,660   creating build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,678   copying build/scripts-3.5/reverse_misordered_cds_coords.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,681   copying build/scripts-3.5/extract_fasta_regions.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,684   copying build/scripts-3.5/interleave_fastq.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,687   copying build/scripts-3.5/write_fasta_from_gff.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,690   copying build/scripts-3.5/merge_masked_fasta_files.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,693   copying build/scripts-3.5/split_fasta_into_even_files.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,695   copying build/scripts-3.5/extend_genes_to_stops.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,700   copying build/scripts-3.5/validate_feature_boundaries_on_molecules.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,706   copying build/scripts-3.5/make_go_slim.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,712   copying build/scripts-3.5/mark_partial_genes.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,718   copying build/scripts-3.5/check_gff_for_internal_stops.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,723   copying build/scripts-3.5/filter_fasta_by_type.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,727   copying build/scripts-3.5/hmmlib_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,733   copying build/scripts-3.5/convert_fastq_to_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,738   copying build/scripts-3.5/replace_gff_type_column_value.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,742   copying build/scripts-3.5/convert_gff3_to_gene_association_format.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,747   copying build/scripts-3.5/remove_orphaned_features.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,752   copying build/scripts-3.5/convert_gff_to_ncbi_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,756   copying build/scripts-3.5/convert_glimmerHMM_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,768   copying build/scripts-3.5/make_go_index.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,771   copying build/scripts-3.5/convert_cegma_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,776   copying build/scripts-3.5/split_molecules_on_gaps.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,781   copying build/scripts-3.5/make_cufflinks_ids_unique.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,786   copying build/scripts-3.5/remove_duplicate_features.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,790   copying build/scripts-3.5/convert_gff3_to_bed.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,794   copying build/scripts-3.5/report_basic_gff_model_agreement.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,799   copying build/scripts-3.5/convert_fasta_contigs_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,803   copying build/scripts-3.5/interleave_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,807   copying build/scripts-3.5/create_taxonomic_profile_from_blast.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,813   copying build/scripts-3.5/convert_scipio_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,818   copying build/scripts-3.5/prepend_to_fasta_header.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,823   copying build/scripts-3.5/fastq_simple_stats.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,827   copying build/scripts-3.5/download_assemblies_from_genbank.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,832   copying build/scripts-3.5/convert_pasa_gff_to_models.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,837   copying build/scripts-3.5/calculate_query_coverage_by_blast.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,843   copying build/scripts-3.5/filter_uniref_by_repid.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,849   copying build/scripts-3.5/convert_blast_btab_to_bed.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,857   copying build/scripts-3.5/tigrfam_info_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,864   copying build/scripts-3.5/append_to_column_9_value.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,870   copying build/scripts-3.5/add_gff3_locus_tags.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,876   copying build/scripts-3.5/make_go_slim_index.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,884   copying build/scripts-3.5/list_biocode.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,889   copying build/scripts-3.5/report_gff3_statistics.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,897   copying build/scripts-3.5/report_gff_intron_and_intergenic_stats.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,904   copying build/scripts-3.5/report_coverage_gaps.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,909   copying build/scripts-3.5/merge_fasta_files_and_uniquify_ids.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,914   copying build/scripts-3.5/replace_homopolymeric_repeats_with_Ns.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,919   copying build/scripts-3.5/convert_blast_btab_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,925   copying build/scripts-3.5/filter_gff3_by_id_list.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,932   copying build/scripts-3.5/create_taxonomy_db.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,939   copying build/scripts-3.5/get_mpilup_from_id_list.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,945   copying build/scripts-3.5/fasta_simple_stats.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,951   copying build/scripts-3.5/set_source_column.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,957   copying build/scripts-3.5/subsample_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,968   copying build/scripts-3.5/uniref_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,974   copying build/scripts-3.5/select_training_and_evaluation_transcripts.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,981   copying build/scripts-3.5/report_or_replace_nonstandard_residues.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,987   copying build/scripts-3.5/convert_cufflinks_gtf_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,992   copying build/scripts-3.5/eggnog_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:42:59,997   copying build/scripts-3.5/split_isoforms_into_individual_genes.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,002   copying build/scripts-3.5/reformat_fasta_residue_lengths.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,006   copying build/scripts-3.5/convert_htab_to_bed.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,013   copying build/scripts-3.5/remove_masked_gene_models.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,018   copying build/scripts-3.5/report_go_slim_counts.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,025   copying build/scripts-3.5/merge_predicted_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,031   copying build/scripts-3.5/validate_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,038   copying build/scripts-3.5/reorient_sequences_by_id.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,043   copying build/scripts-3.5/convert_prodigal_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,049   copying build/scripts-3.5/calculate_gene_coverage_from_assembly.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,056   copying build/scripts-3.5/detect_inverted_repeats.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,063   copying build/scripts-3.5/remove_duplicate_sequences.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,068   copying build/scripts-3.5/convert_augustus_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,075   copying build/scripts-3.5/append_to_fasta_header.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,081   copying build/scripts-3.5/convert_gff3_to_gbk.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,087   copying build/scripts-3.5/convert_metagenemark_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,094   copying build/scripts-3.5/add_polypeptide_to_gff3_gene_models.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,100   copying build/scripts-3.5/filter_fasta_by_abundance.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,106   copying build/scripts-3.5/join_columnar_files.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,111   copying build/scripts-3.5/check_for_embedded_fasta_headers.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,117   copying build/scripts-3.5/uniprot_sprot_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,124   copying build/scripts-3.5/convert_genbank_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,131   copying build/scripts-3.5/filter_fasta_by_header_regex.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,136   copying build/scripts-3.5/correct_gff3_CDS_phase_column.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,143   copying build/scripts-3.5/update_selected_column9_values.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,149   copying build/scripts-3.5/split_interleaved_sequence_file.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,154   copying build/scripts-3.5/compare_gene_structures.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,161   copying build/scripts-3.5/convert_aat_btab_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,167   copying build/scripts-3.5/append_to_fastq_read_header.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,174   copying build/scripts-3.5/filter_fastq_by_N_content.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,182   copying build/scripts-3.5/randomly_subsample_fastq.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,190   copying build/scripts-3.5/convert_gff3_to_ncbi_tbl.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,195   copying build/scripts-3.5/filter_uniref_by_taxonomy.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,202   copying build/scripts-3.5/fasta_base_content.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,208   copying build/scripts-3.5/merge_bam_files.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,213   copying build/scripts-3.5/fasta_size_distribution_plot.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,220   copying build/scripts-3.5/create_rsem_html_table.py -> build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts
2020-09-01T15:43:00,222   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts/reverse_misordered_cds_coords.py to 755
2020-09-01T15:43:00,223   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts/extract_fasta_regions.py to 755
2020-09-01T15:43:00,224   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts/interleave_fastq.py to 755
2020-09-01T15:43:00,225   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts/write_fasta_from_gff.py to 755
2020-09-01T15:43:00,225   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts/merge_masked_fasta_files.py to 755
2020-09-01T15:43:00,226   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts/split_fasta_into_even_files.py to 755
2020-09-01T15:43:00,227   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts/extend_genes_to_stops.py to 755
2020-09-01T15:43:00,227   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts/validate_feature_boundaries_on_molecules.py to 755
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2020-09-01T15:43:00,229   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts/mark_partial_genes.py to 755
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2020-09-01T15:43:00,233   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts/remove_orphaned_features.py to 755
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2020-09-01T15:43:00,237   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts/split_molecules_on_gaps.py to 755
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2020-09-01T15:43:00,287   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.10.0.data/scripts/create_rsem_html_table.py to 755
2020-09-01T15:43:00,358   creating build/bdist.linux-armv7l/wheel/biocode-0.10.0.dist-info/WHEEL
2020-09-01T15:43:08,614   Building wheel for biocode (setup.py): finished with status 'done'
2020-09-01T15:43:08,731   Created wheel for biocode: filename=biocode-0.10.0-py3-none-any.whl size=6574527 sha256=176b55ba344b86385e86406fceaafb4dc19b817ed6ef96cc353386889ff6e709
2020-09-01T15:43:08,732   Stored in directory: /tmp/pip-ephem-wheel-cache-kzexqi9n/wheels/c4/88/cc/9acdbd5e57305d219dbc3e7151fd40d54595b4c3e704741cb9
2020-09-01T15:43:08,737 Successfully built biocode
2020-09-01T15:43:09,929 Removed build tracker: '/tmp/pip-req-tracker-xoedk36n'