2020-09-10T17:49:56,440 Created temporary directory: /tmp/pip-ephem-wheel-cache-9qyuuwuw
2020-09-10T17:49:56,447 Created temporary directory: /tmp/pip-req-tracker-z26rzkfd
2020-09-10T17:49:56,448 Initialized build tracking at /tmp/pip-req-tracker-z26rzkfd
2020-09-10T17:49:56,448 Created build tracker: /tmp/pip-req-tracker-z26rzkfd
2020-09-10T17:49:56,448 Entered build tracker: /tmp/pip-req-tracker-z26rzkfd
2020-09-10T17:49:56,450 Created temporary directory: /tmp/pip-wheel-1p8ipw1i
2020-09-10T17:49:56,465 Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com
2020-09-10T17:49:56,468 2 location(s) to search for versions of pyfastaq:
2020-09-10T17:49:56,468 * https://pypi.org/simple/pyfastaq/
2020-09-10T17:49:56,468 * https://pypi.ngc.nvidia.com/pyfastaq/
2020-09-10T17:49:56,469 Fetching project page and analyzing links: https://pypi.org/simple/pyfastaq/
2020-09-10T17:49:56,471 Getting page https://pypi.org/simple/pyfastaq/
2020-09-10T17:49:56,475 Found index url https://pypi.org/simple
2020-09-10T17:49:56,729   Found link https://files.pythonhosted.org/packages/36/ed/d740797f95b7b113c0979dc56648ed219340ed21c4926fd72466c0cc88af/pyfastaq-3.0.1.tar.gz#sha256=abfdd057c03c53913e15af37b05fc47a865631b550a03d9145326dde4f599322 (from https://pypi.org/simple/pyfastaq/), version: 3.0.1
2020-09-10T17:49:56,730   Found link https://files.pythonhosted.org/packages/64/dd/cea4f3f3aa398245bb65484e767f9789238fcc04d3a4c5660ee874342b33/pyfastaq-3.2.0.tar.gz#sha256=24baa9013e5911918a7465a043bb97e61e3fd28f7021012217aa240744bec95f (from https://pypi.org/simple/pyfastaq/), version: 3.2.0
2020-09-10T17:49:56,731   Found link https://files.pythonhosted.org/packages/d5/f5/e57e945ac3f836f0525e5d9bf54a981c994444bf9de6445f87066ffe7650/pyfastaq-3.3.0.tar.gz#sha256=acca17e68fb07b6a3c71f46c85372b2119325d83fc0a08599fa8d1b6199cdd03 (from https://pypi.org/simple/pyfastaq/), version: 3.3.0
2020-09-10T17:49:56,732   Found link https://files.pythonhosted.org/packages/a6/d8/b080d44a23f57c0dfe387f97804b03992c3496877928c22c54c7112d3219/pyfastaq-3.3.1.tar.gz#sha256=94c6da60e8dfe582ac3db0beb337d0f4772d3a1ea408969d6446d81dba0d5751 (from https://pypi.org/simple/pyfastaq/), version: 3.3.1
2020-09-10T17:49:56,733   Found link https://files.pythonhosted.org/packages/4a/cc/127a596b8971d4ec81f69f0a76e60dc72bfe9d359d11ded08f8a0b447285/pyfastaq-3.4.0.tar.gz#sha256=e35e558f2b246a311c17441c99b9dc5e307fb749792e7041b20a1ba5ac138924 (from https://pypi.org/simple/pyfastaq/), version: 3.4.0
2020-09-10T17:49:56,734   Found link https://files.pythonhosted.org/packages/45/37/7a0dc69b3affdfac70919f337e08099c4eeaefedf2782d17a1f3e04bec46/pyfastaq-3.5.0.tar.gz#sha256=599b28db5a05072335eacd3cea458aff511239e34a9559aaf2e7fe94cce785a9 (from https://pypi.org/simple/pyfastaq/), version: 3.5.0
2020-09-10T17:49:56,734   Found link https://files.pythonhosted.org/packages/d4/99/5adb0efe820a9993fbcc0be844e5372227f5ca5cd55102461aa78a6ed9a0/pyfastaq-3.6.0.tar.gz#sha256=3a052466f89db1e1ac6cfb475117fdf8466ed319b62aabf9531e38f569b51588 (from https://pypi.org/simple/pyfastaq/), version: 3.6.0
2020-09-10T17:49:56,735   Found link https://files.pythonhosted.org/packages/83/66/76240bd0fadd6a0808596c930e8dc7cec25c45b5581f77996e8cad7250a8/pyfastaq-3.6.1.tar.gz#sha256=187245939ceeaaafe2145ff08662ef25a1a5fc7e06dbc0ddcb7c5bc4e5a90b8a (from https://pypi.org/simple/pyfastaq/), version: 3.6.1
2020-09-10T17:49:56,736   Found link https://files.pythonhosted.org/packages/48/16/a8c6b9f661682f0775f670dfa70e658e3aa2fad0f77d89b3f7fd4b1dc0c4/pyfastaq-3.8.0.tar.gz#sha256=9055bc04f0a669283c8d3925df64e4f9a54568e8b3c4e0de9da187e380d55865 (from https://pypi.org/simple/pyfastaq/), version: 3.8.0
2020-09-10T17:49:56,737   Found link https://files.pythonhosted.org/packages/f3/7e/8cf32f7a9513c1d67308b3252d1aa48de2ed7c94ea522d899124a3e064aa/pyfastaq-3.9.0.tar.gz#sha256=d840e56086c6e6e699b59083ccbc222bdcee234e06cdd49b12492e09a3ac4a8d (from https://pypi.org/simple/pyfastaq/), version: 3.9.0
2020-09-10T17:49:56,738   Found link https://files.pythonhosted.org/packages/66/76/4716b417ccecd9f084691160608a40a699a9174b2016d1d0c2cc05f8c439/pyfastaq-3.10.0.tar.gz#sha256=a09604f5143abf27280abbdfcdb85878f760380876a971139b9536955f1cb73c (from https://pypi.org/simple/pyfastaq/), version: 3.10.0
2020-09-10T17:49:56,739   Found link https://files.pythonhosted.org/packages/5b/e0/1b4256c16d9f09f79dd8fe56c4483ce9b4c6aa9759602af175320713d6c9/pyfastaq-3.10.1.tar.gz#sha256=96df96feacf3bdfce937e78886a4cc06005c1db27aede8f8e921fc438aaf4b01 (from https://pypi.org/simple/pyfastaq/), version: 3.10.1
2020-09-10T17:49:56,740   Found link https://files.pythonhosted.org/packages/72/f1/d6e984e10e854dee0bacc75c6b60716b9d7c1ac36a913f1f9215e68748e7/pyfastaq-3.11.0.tar.gz#sha256=343fa8eb4aa959c1d66050e2e864e4d3c49d80a41e3c51196a14df38220dba59 (from https://pypi.org/simple/pyfastaq/), version: 3.11.0
2020-09-10T17:49:56,741   Found link https://files.pythonhosted.org/packages/b2/32/2fdf9d19632d3931a1c962bacff999e4f0a27e5a36c450115f101890bea4/pyfastaq-3.11.1.tar.gz#sha256=bee81a896117c506a12f2a56f02eac10721c2a158adc9a6f88dfa31a6df727c2 (from https://pypi.org/simple/pyfastaq/), version: 3.11.1
2020-09-10T17:49:56,742   Found link https://files.pythonhosted.org/packages/c4/eb/bea30e05075961eecd4410b92cab6d417a38e4cdff4d3075e6c52121e4fe/pyfastaq-3.12.0.tar.gz#sha256=a3a03db385e6eaffa44b659594877bf95d78ac1b1c93d5498a7f0b9e4c4fe2aa (from https://pypi.org/simple/pyfastaq/), version: 3.12.0
2020-09-10T17:49:56,742   Found link https://files.pythonhosted.org/packages/99/59/9967177929c61cec55205a39e91df3dd7634397d8cb3b40ce66a296ab76b/pyfastaq-3.12.1.tar.gz#sha256=996dee7c5583b9c06c0a96a9e539d5f4218c084a3b2ee757fb245b4222b2a829 (from https://pypi.org/simple/pyfastaq/), version: 3.12.1
2020-09-10T17:49:56,743   Found link https://files.pythonhosted.org/packages/2a/46/6ece19838a79489556c97092e832bafeb46e7b28c52418a6c5a7568da999/pyfastaq-3.13.0.tar.gz#sha256=79bfe342e053d51efbc7a901489c62e996566b4baf0f33cde1caff3a387756af (from https://pypi.org/simple/pyfastaq/), version: 3.13.0
2020-09-10T17:49:56,744   Found link https://files.pythonhosted.org/packages/0e/5d/8b39442b62c43da835c89f4c244d037bc7fcd8b47b0c0fff6e8d9097a035/pyfastaq-3.14.0.tar.gz#sha256=54dc8cc8b3d24111f6939cf563833b8e9e78777b9cf7b82ca8ddec04aa1c05f2 (from https://pypi.org/simple/pyfastaq/), version: 3.14.0
2020-09-10T17:49:56,745   Found link https://files.pythonhosted.org/packages/32/db/235ff9020c825d547a11e449c315b0a8f90f1afdd5dcc78e89580f561f7f/pyfastaq-3.15.0.tar.gz#sha256=30013f38956535fddddedda03dc072e808704f6e026231dd1539869a08afcbe8 (from https://pypi.org/simple/pyfastaq/), version: 3.15.0
2020-09-10T17:49:56,746   Found link https://files.pythonhosted.org/packages/91/5e/cd2a8b4e3b601b89b9af2ecd706ffade96b6b2c89b2f8d50ab8a8bac3fed/pyfastaq-3.16.0.tar.gz#sha256=368f3f1752668283f5d1aac4ea80e9595a57dc92a7d4925d723407f862af0e4e (from https://pypi.org/simple/pyfastaq/), version: 3.16.0
2020-09-10T17:49:56,747   Found link https://files.pythonhosted.org/packages/28/9d/afbedb1994c9e9076d2bf87865ad74ed60a28cde651ce58952ac53534f28/pyfastaq-3.17.0.tar.gz#sha256=40c6dc0cea72c0ab91d10e5627a26dea1783b7e5e3edcfff8e1dc960bfd71cdc (from https://pypi.org/simple/pyfastaq/), version: 3.17.0
2020-09-10T17:49:56,748 Fetching project page and analyzing links: https://pypi.ngc.nvidia.com/pyfastaq/
2020-09-10T17:49:56,749 Getting page https://pypi.ngc.nvidia.com/pyfastaq/
2020-09-10T17:49:56,751 Found index url https://pypi.ngc.nvidia.com
2020-09-10T17:49:57,702 Could not fetch URL https://pypi.ngc.nvidia.com/pyfastaq/: 404 Client Error: Not Found for url: https://developer.download.nvidia.com/compute/redist/pyfastaq/ - skipping
2020-09-10T17:49:57,728 Given no hashes to check 1 links for project 'pyfastaq': discarding no candidates
2020-09-10T17:49:57,730 Using version 3.6.1 (newest of versions: 3.6.1)
2020-09-10T17:49:57,739 Collecting pyfastaq==3.6.1
2020-09-10T17:49:57,744   Created temporary directory: /tmp/pip-unpack-e_sat56g
2020-09-10T17:49:57,970   Downloading pyfastaq-3.6.1.tar.gz (48 kB)
2020-09-10T17:49:59,007   Added pyfastaq==3.6.1 from https://files.pythonhosted.org/packages/83/66/76240bd0fadd6a0808596c930e8dc7cec25c45b5581f77996e8cad7250a8/pyfastaq-3.6.1.tar.gz#sha256=187245939ceeaaafe2145ff08662ef25a1a5fc7e06dbc0ddcb7c5bc4e5a90b8a to build tracker '/tmp/pip-req-tracker-z26rzkfd'
2020-09-10T17:49:59,009     Running setup.py (path:/tmp/pip-wheel-1p8ipw1i/pyfastaq/setup.py) egg_info for package pyfastaq
2020-09-10T17:49:59,011     Created temporary directory: /tmp/pip-pip-egg-info-m84re0gv
2020-09-10T17:49:59,011     Running command python setup.py egg_info
2020-09-10T17:50:01,344     running egg_info
2020-09-10T17:50:01,349     creating /tmp/pip-pip-egg-info-m84re0gv/pyfastaq.egg-info
2020-09-10T17:50:01,352     writing /tmp/pip-pip-egg-info-m84re0gv/pyfastaq.egg-info/PKG-INFO
2020-09-10T17:50:01,356     writing dependency_links to /tmp/pip-pip-egg-info-m84re0gv/pyfastaq.egg-info/dependency_links.txt
2020-09-10T17:50:01,358     writing requirements to /tmp/pip-pip-egg-info-m84re0gv/pyfastaq.egg-info/requires.txt
2020-09-10T17:50:01,362     writing top-level names to /tmp/pip-pip-egg-info-m84re0gv/pyfastaq.egg-info/top_level.txt
2020-09-10T17:50:01,366     writing manifest file '/tmp/pip-pip-egg-info-m84re0gv/pyfastaq.egg-info/SOURCES.txt'
2020-09-10T17:50:01,746     reading manifest file '/tmp/pip-pip-egg-info-m84re0gv/pyfastaq.egg-info/SOURCES.txt'
2020-09-10T17:50:01,750     reading manifest template 'MANIFEST.in'
2020-09-10T17:50:02,460     writing manifest file '/tmp/pip-pip-egg-info-m84re0gv/pyfastaq.egg-info/SOURCES.txt'
2020-09-10T17:50:02,602   Source in /tmp/pip-wheel-1p8ipw1i/pyfastaq has version 3.6.1, which satisfies requirement pyfastaq==3.6.1 from https://files.pythonhosted.org/packages/83/66/76240bd0fadd6a0808596c930e8dc7cec25c45b5581f77996e8cad7250a8/pyfastaq-3.6.1.tar.gz#sha256=187245939ceeaaafe2145ff08662ef25a1a5fc7e06dbc0ddcb7c5bc4e5a90b8a
2020-09-10T17:50:02,604   Removed pyfastaq==3.6.1 from https://files.pythonhosted.org/packages/83/66/76240bd0fadd6a0808596c930e8dc7cec25c45b5581f77996e8cad7250a8/pyfastaq-3.6.1.tar.gz#sha256=187245939ceeaaafe2145ff08662ef25a1a5fc7e06dbc0ddcb7c5bc4e5a90b8a from build tracker '/tmp/pip-req-tracker-z26rzkfd'
2020-09-10T17:50:02,608 Building wheels for collected packages: pyfastaq
2020-09-10T17:50:02,617   Created temporary directory: /tmp/pip-wheel-rj8yzds2
2020-09-10T17:50:02,618   Building wheel for pyfastaq (setup.py): started
2020-09-10T17:50:02,618   Destination directory: /tmp/pip-wheel-rj8yzds2
2020-09-10T17:50:02,619   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-1p8ipw1i/pyfastaq/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-1p8ipw1i/pyfastaq/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-rj8yzds2
2020-09-10T17:50:05,011   running bdist_wheel
2020-09-10T17:50:05,028   running build
2020-09-10T17:50:05,029   running build_py
2020-09-10T17:50:05,362   creating build
2020-09-10T17:50:05,363   creating build/lib
2020-09-10T17:50:05,364   creating build/lib/pyfastaq
2020-09-10T17:50:05,367   copying pyfastaq/genetic_codes.py -> build/lib/pyfastaq
2020-09-10T17:50:05,372   copying pyfastaq/utils.py -> build/lib/pyfastaq
2020-09-10T17:50:05,377   copying pyfastaq/intervals.py -> build/lib/pyfastaq
2020-09-10T17:50:05,382   copying pyfastaq/caf.py -> build/lib/pyfastaq
2020-09-10T17:50:05,386   copying pyfastaq/sequences.py -> build/lib/pyfastaq
2020-09-10T17:50:05,393   copying pyfastaq/__init__.py -> build/lib/pyfastaq
2020-09-10T17:50:05,398   copying pyfastaq/common.py -> build/lib/pyfastaq
2020-09-10T17:50:05,403   copying pyfastaq/tasks.py -> build/lib/pyfastaq
2020-09-10T17:50:05,419   creating build/lib/pyfastaq/runners
2020-09-10T17:50:05,422   copying pyfastaq/runners/make_random_contigs.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,427   copying pyfastaq/runners/to_perfect_reads.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,432   copying pyfastaq/runners/capillary_to_pairs.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,437   copying pyfastaq/runners/count_sequences.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,442   copying pyfastaq/runners/deinterleave.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,448   copying pyfastaq/runners/reverse_complement.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,454   copying pyfastaq/runners/strip_illumina_suffix.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,460   copying pyfastaq/runners/split_by_base_count.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,466   copying pyfastaq/runners/sort_by_size.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,472   copying pyfastaq/runners/to_orfs_gff.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,478   copying pyfastaq/runners/get_ids.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,484   copying pyfastaq/runners/chunker.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,490   copying pyfastaq/runners/replace_bases.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,495   copying pyfastaq/runners/to_random_subset.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,501   copying pyfastaq/runners/interleave.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,507   copying pyfastaq/runners/scaffolds_to_contigs.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,512   copying pyfastaq/runners/to_fake_qual.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,518   copying pyfastaq/runners/to_mira_xml.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,524   copying pyfastaq/runners/fasta_to_fastq.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,529   copying pyfastaq/runners/enumerate_names.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,535   copying pyfastaq/runners/long_read_simulate.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,541   copying pyfastaq/runners/get_seq_flanking_gaps.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,546   copying pyfastaq/runners/merge.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,552   copying pyfastaq/runners/caf_to_fastq.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,558   copying pyfastaq/runners/to_unique_by_id.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,562   copying pyfastaq/runners/expand_nucleotides.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,567   copying pyfastaq/runners/trim_ends.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,571   copying pyfastaq/runners/translate.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,575   copying pyfastaq/runners/trim_Ns_at_end.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,579   copying pyfastaq/runners/search_for_seq.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,585   copying pyfastaq/runners/add_indels.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,591   copying pyfastaq/runners/__init__.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,596   copying pyfastaq/runners/trim_contigs.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,602   copying pyfastaq/runners/to_tiling_bam.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,608   copying pyfastaq/runners/sequence_trim.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,614   copying pyfastaq/runners/version.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,620   copying pyfastaq/runners/filter.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,626   copying pyfastaq/runners/to_fasta.py -> build/lib/pyfastaq/runners
2020-09-10T17:50:05,645   running build_scripts
2020-09-10T17:50:05,646   creating build/scripts-3.5
2020-09-10T17:50:05,649   copying and adjusting scripts/fastaq -> build/scripts-3.5
2020-09-10T17:50:05,652   changing mode of build/scripts-3.5/fastaq from 644 to 755
2020-09-10T17:50:05,660   installing to build/bdist.linux-armv7l/wheel
2020-09-10T17:50:05,661   running install
2020-09-10T17:50:05,662   running install_lib
2020-09-10T17:50:05,670   creating build/bdist.linux-armv7l
2020-09-10T17:50:05,671   creating build/bdist.linux-armv7l/wheel
2020-09-10T17:50:05,675   creating build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-10T17:50:05,677   copying build/lib/pyfastaq/genetic_codes.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-10T17:50:05,681   copying build/lib/pyfastaq/utils.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-10T17:50:05,686   copying build/lib/pyfastaq/intervals.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-10T17:50:05,691   copying build/lib/pyfastaq/caf.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-10T17:50:05,700   creating build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,703   copying build/lib/pyfastaq/runners/make_random_contigs.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,709   copying build/lib/pyfastaq/runners/to_perfect_reads.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,715   copying build/lib/pyfastaq/runners/capillary_to_pairs.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,721   copying build/lib/pyfastaq/runners/count_sequences.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,726   copying build/lib/pyfastaq/runners/deinterleave.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,731   copying build/lib/pyfastaq/runners/reverse_complement.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,737   copying build/lib/pyfastaq/runners/strip_illumina_suffix.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,742   copying build/lib/pyfastaq/runners/split_by_base_count.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,748   copying build/lib/pyfastaq/runners/sort_by_size.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,753   copying build/lib/pyfastaq/runners/to_orfs_gff.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,758   copying build/lib/pyfastaq/runners/get_ids.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,764   copying build/lib/pyfastaq/runners/chunker.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,769   copying build/lib/pyfastaq/runners/replace_bases.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,775   copying build/lib/pyfastaq/runners/to_random_subset.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,780   copying build/lib/pyfastaq/runners/interleave.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,786   copying build/lib/pyfastaq/runners/scaffolds_to_contigs.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,791   copying build/lib/pyfastaq/runners/to_fake_qual.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,797   copying build/lib/pyfastaq/runners/to_mira_xml.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,802   copying build/lib/pyfastaq/runners/fasta_to_fastq.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,808   copying build/lib/pyfastaq/runners/enumerate_names.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,814   copying build/lib/pyfastaq/runners/long_read_simulate.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,820   copying build/lib/pyfastaq/runners/get_seq_flanking_gaps.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,825   copying build/lib/pyfastaq/runners/merge.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,831   copying build/lib/pyfastaq/runners/caf_to_fastq.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,836   copying build/lib/pyfastaq/runners/to_unique_by_id.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,842   copying build/lib/pyfastaq/runners/expand_nucleotides.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,847   copying build/lib/pyfastaq/runners/trim_ends.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,853   copying build/lib/pyfastaq/runners/translate.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,858   copying build/lib/pyfastaq/runners/trim_Ns_at_end.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,864   copying build/lib/pyfastaq/runners/search_for_seq.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,869   copying build/lib/pyfastaq/runners/add_indels.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,876   copying build/lib/pyfastaq/runners/__init__.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,881   copying build/lib/pyfastaq/runners/trim_contigs.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,886   copying build/lib/pyfastaq/runners/to_tiling_bam.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,892   copying build/lib/pyfastaq/runners/sequence_trim.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,898   copying build/lib/pyfastaq/runners/version.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,903   copying build/lib/pyfastaq/runners/filter.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,909   copying build/lib/pyfastaq/runners/to_fasta.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-10T17:50:05,914   copying build/lib/pyfastaq/sequences.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-10T17:50:05,923   copying build/lib/pyfastaq/__init__.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-10T17:50:05,928   copying build/lib/pyfastaq/common.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-10T17:50:05,933   copying build/lib/pyfastaq/tasks.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-10T17:50:05,941   running install_egg_info
2020-09-10T17:50:05,989   running egg_info
2020-09-10T17:50:05,990   writing requirements to pyfastaq.egg-info/requires.txt
2020-09-10T17:50:05,993   writing pyfastaq.egg-info/PKG-INFO
2020-09-10T17:50:05,996   writing dependency_links to pyfastaq.egg-info/dependency_links.txt
2020-09-10T17:50:05,1000   writing top-level names to pyfastaq.egg-info/top_level.txt
2020-09-10T17:50:06,016   reading manifest file 'pyfastaq.egg-info/SOURCES.txt'
2020-09-10T17:50:06,048   reading manifest template 'MANIFEST.in'
2020-09-10T17:50:06,676   writing manifest file 'pyfastaq.egg-info/SOURCES.txt'
2020-09-10T17:50:06,681   Copying pyfastaq.egg-info to build/bdist.linux-armv7l/wheel/pyfastaq-3.6.1-py3.5.egg-info
2020-09-10T17:50:06,706   running install_scripts
2020-09-10T17:50:06,842   creating build/bdist.linux-armv7l/wheel/pyfastaq-3.6.1.data
2020-09-10T17:50:06,842   creating build/bdist.linux-armv7l/wheel/pyfastaq-3.6.1.data/scripts
2020-09-10T17:50:06,845   copying build/scripts-3.5/fastaq -> build/bdist.linux-armv7l/wheel/pyfastaq-3.6.1.data/scripts
2020-09-10T17:50:06,850   changing mode of build/bdist.linux-armv7l/wheel/pyfastaq-3.6.1.data/scripts/fastaq to 755
2020-09-10T17:50:06,907   creating build/bdist.linux-armv7l/wheel/pyfastaq-3.6.1.dist-info/WHEEL
2020-09-10T17:50:07,320   Building wheel for pyfastaq (setup.py): finished with status 'done'
2020-09-10T17:50:07,351   Created wheel for pyfastaq: filename=pyfastaq-3.6.1-py3-none-any.whl size=43719 sha256=f6688fe4628de61b3d813fd8d49d68b3be0f80a255cb5a3947b39a87bf7863e4
2020-09-10T17:50:07,353   Stored in directory: /tmp/pip-ephem-wheel-cache-9qyuuwuw/wheels/72/8b/88/511763246cfe673323da1eddcbf785ebbfda26be2957740df6
2020-09-10T17:50:07,359 Successfully built pyfastaq
2020-09-10T17:50:07,374 Removed build tracker: '/tmp/pip-req-tracker-z26rzkfd'