2020-09-11T03:36:13,550 Created temporary directory: /tmp/pip-ephem-wheel-cache-1ywmk78_
2020-09-11T03:36:13,556 Created temporary directory: /tmp/pip-req-tracker-szcj_hv5
2020-09-11T03:36:13,557 Initialized build tracking at /tmp/pip-req-tracker-szcj_hv5
2020-09-11T03:36:13,558 Created build tracker: /tmp/pip-req-tracker-szcj_hv5
2020-09-11T03:36:13,558 Entered build tracker: /tmp/pip-req-tracker-szcj_hv5
2020-09-11T03:36:13,560 Created temporary directory: /tmp/pip-wheel-29j3mnol
2020-09-11T03:36:13,577 Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com
2020-09-11T03:36:13,580 2 location(s) to search for versions of pyfastaq:
2020-09-11T03:36:13,580 * https://pypi.org/simple/pyfastaq/
2020-09-11T03:36:13,580 * https://pypi.ngc.nvidia.com/pyfastaq/
2020-09-11T03:36:13,580 Fetching project page and analyzing links: https://pypi.org/simple/pyfastaq/
2020-09-11T03:36:13,583 Getting page https://pypi.org/simple/pyfastaq/
2020-09-11T03:36:13,587 Found index url https://pypi.org/simple
2020-09-11T03:36:13,841   Found link https://files.pythonhosted.org/packages/36/ed/d740797f95b7b113c0979dc56648ed219340ed21c4926fd72466c0cc88af/pyfastaq-3.0.1.tar.gz#sha256=abfdd057c03c53913e15af37b05fc47a865631b550a03d9145326dde4f599322 (from https://pypi.org/simple/pyfastaq/), version: 3.0.1
2020-09-11T03:36:13,842   Found link https://files.pythonhosted.org/packages/64/dd/cea4f3f3aa398245bb65484e767f9789238fcc04d3a4c5660ee874342b33/pyfastaq-3.2.0.tar.gz#sha256=24baa9013e5911918a7465a043bb97e61e3fd28f7021012217aa240744bec95f (from https://pypi.org/simple/pyfastaq/), version: 3.2.0
2020-09-11T03:36:13,843   Found link https://files.pythonhosted.org/packages/d5/f5/e57e945ac3f836f0525e5d9bf54a981c994444bf9de6445f87066ffe7650/pyfastaq-3.3.0.tar.gz#sha256=acca17e68fb07b6a3c71f46c85372b2119325d83fc0a08599fa8d1b6199cdd03 (from https://pypi.org/simple/pyfastaq/), version: 3.3.0
2020-09-11T03:36:13,844   Found link https://files.pythonhosted.org/packages/a6/d8/b080d44a23f57c0dfe387f97804b03992c3496877928c22c54c7112d3219/pyfastaq-3.3.1.tar.gz#sha256=94c6da60e8dfe582ac3db0beb337d0f4772d3a1ea408969d6446d81dba0d5751 (from https://pypi.org/simple/pyfastaq/), version: 3.3.1
2020-09-11T03:36:13,845   Found link https://files.pythonhosted.org/packages/4a/cc/127a596b8971d4ec81f69f0a76e60dc72bfe9d359d11ded08f8a0b447285/pyfastaq-3.4.0.tar.gz#sha256=e35e558f2b246a311c17441c99b9dc5e307fb749792e7041b20a1ba5ac138924 (from https://pypi.org/simple/pyfastaq/), version: 3.4.0
2020-09-11T03:36:13,846   Found link https://files.pythonhosted.org/packages/45/37/7a0dc69b3affdfac70919f337e08099c4eeaefedf2782d17a1f3e04bec46/pyfastaq-3.5.0.tar.gz#sha256=599b28db5a05072335eacd3cea458aff511239e34a9559aaf2e7fe94cce785a9 (from https://pypi.org/simple/pyfastaq/), version: 3.5.0
2020-09-11T03:36:13,847   Found link https://files.pythonhosted.org/packages/d4/99/5adb0efe820a9993fbcc0be844e5372227f5ca5cd55102461aa78a6ed9a0/pyfastaq-3.6.0.tar.gz#sha256=3a052466f89db1e1ac6cfb475117fdf8466ed319b62aabf9531e38f569b51588 (from https://pypi.org/simple/pyfastaq/), version: 3.6.0
2020-09-11T03:36:13,848   Found link https://files.pythonhosted.org/packages/83/66/76240bd0fadd6a0808596c930e8dc7cec25c45b5581f77996e8cad7250a8/pyfastaq-3.6.1.tar.gz#sha256=187245939ceeaaafe2145ff08662ef25a1a5fc7e06dbc0ddcb7c5bc4e5a90b8a (from https://pypi.org/simple/pyfastaq/), version: 3.6.1
2020-09-11T03:36:13,849   Found link https://files.pythonhosted.org/packages/48/16/a8c6b9f661682f0775f670dfa70e658e3aa2fad0f77d89b3f7fd4b1dc0c4/pyfastaq-3.8.0.tar.gz#sha256=9055bc04f0a669283c8d3925df64e4f9a54568e8b3c4e0de9da187e380d55865 (from https://pypi.org/simple/pyfastaq/), version: 3.8.0
2020-09-11T03:36:13,850   Found link https://files.pythonhosted.org/packages/f3/7e/8cf32f7a9513c1d67308b3252d1aa48de2ed7c94ea522d899124a3e064aa/pyfastaq-3.9.0.tar.gz#sha256=d840e56086c6e6e699b59083ccbc222bdcee234e06cdd49b12492e09a3ac4a8d (from https://pypi.org/simple/pyfastaq/), version: 3.9.0
2020-09-11T03:36:13,850   Found link https://files.pythonhosted.org/packages/66/76/4716b417ccecd9f084691160608a40a699a9174b2016d1d0c2cc05f8c439/pyfastaq-3.10.0.tar.gz#sha256=a09604f5143abf27280abbdfcdb85878f760380876a971139b9536955f1cb73c (from https://pypi.org/simple/pyfastaq/), version: 3.10.0
2020-09-11T03:36:13,851   Found link https://files.pythonhosted.org/packages/5b/e0/1b4256c16d9f09f79dd8fe56c4483ce9b4c6aa9759602af175320713d6c9/pyfastaq-3.10.1.tar.gz#sha256=96df96feacf3bdfce937e78886a4cc06005c1db27aede8f8e921fc438aaf4b01 (from https://pypi.org/simple/pyfastaq/), version: 3.10.1
2020-09-11T03:36:13,852   Found link https://files.pythonhosted.org/packages/72/f1/d6e984e10e854dee0bacc75c6b60716b9d7c1ac36a913f1f9215e68748e7/pyfastaq-3.11.0.tar.gz#sha256=343fa8eb4aa959c1d66050e2e864e4d3c49d80a41e3c51196a14df38220dba59 (from https://pypi.org/simple/pyfastaq/), version: 3.11.0
2020-09-11T03:36:13,853   Found link https://files.pythonhosted.org/packages/b2/32/2fdf9d19632d3931a1c962bacff999e4f0a27e5a36c450115f101890bea4/pyfastaq-3.11.1.tar.gz#sha256=bee81a896117c506a12f2a56f02eac10721c2a158adc9a6f88dfa31a6df727c2 (from https://pypi.org/simple/pyfastaq/), version: 3.11.1
2020-09-11T03:36:13,854   Found link https://files.pythonhosted.org/packages/c4/eb/bea30e05075961eecd4410b92cab6d417a38e4cdff4d3075e6c52121e4fe/pyfastaq-3.12.0.tar.gz#sha256=a3a03db385e6eaffa44b659594877bf95d78ac1b1c93d5498a7f0b9e4c4fe2aa (from https://pypi.org/simple/pyfastaq/), version: 3.12.0
2020-09-11T03:36:13,855   Found link https://files.pythonhosted.org/packages/99/59/9967177929c61cec55205a39e91df3dd7634397d8cb3b40ce66a296ab76b/pyfastaq-3.12.1.tar.gz#sha256=996dee7c5583b9c06c0a96a9e539d5f4218c084a3b2ee757fb245b4222b2a829 (from https://pypi.org/simple/pyfastaq/), version: 3.12.1
2020-09-11T03:36:13,856   Found link https://files.pythonhosted.org/packages/2a/46/6ece19838a79489556c97092e832bafeb46e7b28c52418a6c5a7568da999/pyfastaq-3.13.0.tar.gz#sha256=79bfe342e053d51efbc7a901489c62e996566b4baf0f33cde1caff3a387756af (from https://pypi.org/simple/pyfastaq/), version: 3.13.0
2020-09-11T03:36:13,857   Found link https://files.pythonhosted.org/packages/0e/5d/8b39442b62c43da835c89f4c244d037bc7fcd8b47b0c0fff6e8d9097a035/pyfastaq-3.14.0.tar.gz#sha256=54dc8cc8b3d24111f6939cf563833b8e9e78777b9cf7b82ca8ddec04aa1c05f2 (from https://pypi.org/simple/pyfastaq/), version: 3.14.0
2020-09-11T03:36:13,857   Found link https://files.pythonhosted.org/packages/32/db/235ff9020c825d547a11e449c315b0a8f90f1afdd5dcc78e89580f561f7f/pyfastaq-3.15.0.tar.gz#sha256=30013f38956535fddddedda03dc072e808704f6e026231dd1539869a08afcbe8 (from https://pypi.org/simple/pyfastaq/), version: 3.15.0
2020-09-11T03:36:13,858   Found link https://files.pythonhosted.org/packages/91/5e/cd2a8b4e3b601b89b9af2ecd706ffade96b6b2c89b2f8d50ab8a8bac3fed/pyfastaq-3.16.0.tar.gz#sha256=368f3f1752668283f5d1aac4ea80e9595a57dc92a7d4925d723407f862af0e4e (from https://pypi.org/simple/pyfastaq/), version: 3.16.0
2020-09-11T03:36:13,859   Found link https://files.pythonhosted.org/packages/28/9d/afbedb1994c9e9076d2bf87865ad74ed60a28cde651ce58952ac53534f28/pyfastaq-3.17.0.tar.gz#sha256=40c6dc0cea72c0ab91d10e5627a26dea1783b7e5e3edcfff8e1dc960bfd71cdc (from https://pypi.org/simple/pyfastaq/), version: 3.17.0
2020-09-11T03:36:13,860 Fetching project page and analyzing links: https://pypi.ngc.nvidia.com/pyfastaq/
2020-09-11T03:36:13,861 Getting page https://pypi.ngc.nvidia.com/pyfastaq/
2020-09-11T03:36:13,863 Found index url https://pypi.ngc.nvidia.com
2020-09-11T03:36:14,552 Could not fetch URL https://pypi.ngc.nvidia.com/pyfastaq/: 404 Client Error: Not Found for url: https://developer.download.nvidia.com/compute/redist/pyfastaq/ - skipping
2020-09-11T03:36:14,582 Given no hashes to check 1 links for project 'pyfastaq': discarding no candidates
2020-09-11T03:36:14,584 Using version 3.11.1 (newest of versions: 3.11.1)
2020-09-11T03:36:14,593 Collecting pyfastaq==3.11.1
2020-09-11T03:36:14,598   Created temporary directory: /tmp/pip-unpack-ssx2er0v
2020-09-11T03:36:14,825   Downloading pyfastaq-3.11.1.tar.gz (47 kB)
2020-09-11T03:36:15,909   Added pyfastaq==3.11.1 from https://files.pythonhosted.org/packages/b2/32/2fdf9d19632d3931a1c962bacff999e4f0a27e5a36c450115f101890bea4/pyfastaq-3.11.1.tar.gz#sha256=bee81a896117c506a12f2a56f02eac10721c2a158adc9a6f88dfa31a6df727c2 to build tracker '/tmp/pip-req-tracker-szcj_hv5'
2020-09-11T03:36:15,911     Running setup.py (path:/tmp/pip-wheel-29j3mnol/pyfastaq/setup.py) egg_info for package pyfastaq
2020-09-11T03:36:15,913     Created temporary directory: /tmp/pip-pip-egg-info-sk2s4ch6
2020-09-11T03:36:15,913     Running command python setup.py egg_info
2020-09-11T03:36:18,207     running egg_info
2020-09-11T03:36:18,212     creating /tmp/pip-pip-egg-info-sk2s4ch6/pyfastaq.egg-info
2020-09-11T03:36:18,218     writing dependency_links to /tmp/pip-pip-egg-info-sk2s4ch6/pyfastaq.egg-info/dependency_links.txt
2020-09-11T03:36:18,220     writing top-level names to /tmp/pip-pip-egg-info-sk2s4ch6/pyfastaq.egg-info/top_level.txt
2020-09-11T03:36:18,222     writing /tmp/pip-pip-egg-info-sk2s4ch6/pyfastaq.egg-info/PKG-INFO
2020-09-11T03:36:18,228     writing manifest file '/tmp/pip-pip-egg-info-sk2s4ch6/pyfastaq.egg-info/SOURCES.txt'
2020-09-11T03:36:18,613     reading manifest file '/tmp/pip-pip-egg-info-sk2s4ch6/pyfastaq.egg-info/SOURCES.txt'
2020-09-11T03:36:18,616     reading manifest template 'MANIFEST.in'
2020-09-11T03:36:19,340     writing manifest file '/tmp/pip-pip-egg-info-sk2s4ch6/pyfastaq.egg-info/SOURCES.txt'
2020-09-11T03:36:19,482   Source in /tmp/pip-wheel-29j3mnol/pyfastaq has version 3.11.1, which satisfies requirement pyfastaq==3.11.1 from https://files.pythonhosted.org/packages/b2/32/2fdf9d19632d3931a1c962bacff999e4f0a27e5a36c450115f101890bea4/pyfastaq-3.11.1.tar.gz#sha256=bee81a896117c506a12f2a56f02eac10721c2a158adc9a6f88dfa31a6df727c2
2020-09-11T03:36:19,483   Removed pyfastaq==3.11.1 from https://files.pythonhosted.org/packages/b2/32/2fdf9d19632d3931a1c962bacff999e4f0a27e5a36c450115f101890bea4/pyfastaq-3.11.1.tar.gz#sha256=bee81a896117c506a12f2a56f02eac10721c2a158adc9a6f88dfa31a6df727c2 from build tracker '/tmp/pip-req-tracker-szcj_hv5'
2020-09-11T03:36:19,487 Building wheels for collected packages: pyfastaq
2020-09-11T03:36:19,499   Created temporary directory: /tmp/pip-wheel-_pk2ekqo
2020-09-11T03:36:19,500   Building wheel for pyfastaq (setup.py): started
2020-09-11T03:36:19,502   Destination directory: /tmp/pip-wheel-_pk2ekqo
2020-09-11T03:36:19,503   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-29j3mnol/pyfastaq/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-29j3mnol/pyfastaq/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-_pk2ekqo
2020-09-11T03:36:21,844   running bdist_wheel
2020-09-11T03:36:21,860   running build
2020-09-11T03:36:21,861   running build_py
2020-09-11T03:36:22,201   creating build
2020-09-11T03:36:22,202   creating build/lib
2020-09-11T03:36:22,203   creating build/lib/pyfastaq
2020-09-11T03:36:22,206   copying pyfastaq/genetic_codes.py -> build/lib/pyfastaq
2020-09-11T03:36:22,211   copying pyfastaq/utils.py -> build/lib/pyfastaq
2020-09-11T03:36:22,216   copying pyfastaq/intervals.py -> build/lib/pyfastaq
2020-09-11T03:36:22,221   copying pyfastaq/caf.py -> build/lib/pyfastaq
2020-09-11T03:36:22,227   copying pyfastaq/sequences.py -> build/lib/pyfastaq
2020-09-11T03:36:22,236   copying pyfastaq/__init__.py -> build/lib/pyfastaq
2020-09-11T03:36:22,241   copying pyfastaq/common.py -> build/lib/pyfastaq
2020-09-11T03:36:22,247   copying pyfastaq/tasks.py -> build/lib/pyfastaq
2020-09-11T03:36:22,265   creating build/lib/pyfastaq/runners
2020-09-11T03:36:22,267   copying pyfastaq/runners/make_random_contigs.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,271   copying pyfastaq/runners/to_perfect_reads.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,276   copying pyfastaq/runners/capillary_to_pairs.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,281   copying pyfastaq/runners/count_sequences.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,286   copying pyfastaq/runners/deinterleave.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,291   copying pyfastaq/runners/reverse_complement.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,297   copying pyfastaq/runners/strip_illumina_suffix.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,303   copying pyfastaq/runners/split_by_base_count.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,309   copying pyfastaq/runners/sort_by_size.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,314   copying pyfastaq/runners/to_orfs_gff.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,320   copying pyfastaq/runners/get_ids.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,326   copying pyfastaq/runners/chunker.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,332   copying pyfastaq/runners/replace_bases.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,338   copying pyfastaq/runners/to_random_subset.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,344   copying pyfastaq/runners/interleave.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,349   copying pyfastaq/runners/scaffolds_to_contigs.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,355   copying pyfastaq/runners/to_fake_qual.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,361   copying pyfastaq/runners/to_mira_xml.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,367   copying pyfastaq/runners/fasta_to_fastq.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,373   copying pyfastaq/runners/enumerate_names.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,379   copying pyfastaq/runners/get_seq_flanking_gaps.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,384   copying pyfastaq/runners/merge.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,390   copying pyfastaq/runners/caf_to_fastq.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,396   copying pyfastaq/runners/to_unique_by_id.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,402   copying pyfastaq/runners/expand_nucleotides.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,408   copying pyfastaq/runners/trim_ends.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,413   copying pyfastaq/runners/translate.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,419   copying pyfastaq/runners/trim_Ns_at_end.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,424   copying pyfastaq/runners/search_for_seq.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,429   copying pyfastaq/runners/add_indels.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,434   copying pyfastaq/runners/__init__.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,437   copying pyfastaq/runners/trim_contigs.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,442   copying pyfastaq/runners/to_tiling_bam.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,446   copying pyfastaq/runners/sequence_trim.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,451   copying pyfastaq/runners/version.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,457   copying pyfastaq/runners/filter.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,463   copying pyfastaq/runners/to_boulderio.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,469   copying pyfastaq/runners/to_fasta.py -> build/lib/pyfastaq/runners
2020-09-11T03:36:22,488   running build_scripts
2020-09-11T03:36:22,490   creating build/scripts-3.5
2020-09-11T03:36:22,493   copying and adjusting scripts/fastaq -> build/scripts-3.5
2020-09-11T03:36:22,495   changing mode of build/scripts-3.5/fastaq from 644 to 755
2020-09-11T03:36:22,503   installing to build/bdist.linux-armv7l/wheel
2020-09-11T03:36:22,504   running install
2020-09-11T03:36:22,506   running install_lib
2020-09-11T03:36:22,514   creating build/bdist.linux-armv7l
2020-09-11T03:36:22,515   creating build/bdist.linux-armv7l/wheel
2020-09-11T03:36:22,518   creating build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-11T03:36:22,521   copying build/lib/pyfastaq/genetic_codes.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-11T03:36:22,525   copying build/lib/pyfastaq/utils.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-11T03:36:22,530   copying build/lib/pyfastaq/intervals.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-11T03:36:22,535   copying build/lib/pyfastaq/caf.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-11T03:36:22,544   creating build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,547   copying build/lib/pyfastaq/runners/make_random_contigs.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,553   copying build/lib/pyfastaq/runners/to_perfect_reads.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,560   copying build/lib/pyfastaq/runners/capillary_to_pairs.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,565   copying build/lib/pyfastaq/runners/count_sequences.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,571   copying build/lib/pyfastaq/runners/deinterleave.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,577   copying build/lib/pyfastaq/runners/reverse_complement.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,582   copying build/lib/pyfastaq/runners/strip_illumina_suffix.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,587   copying build/lib/pyfastaq/runners/split_by_base_count.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,593   copying build/lib/pyfastaq/runners/sort_by_size.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,599   copying build/lib/pyfastaq/runners/to_orfs_gff.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,606   copying build/lib/pyfastaq/runners/get_ids.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,612   copying build/lib/pyfastaq/runners/chunker.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,617   copying build/lib/pyfastaq/runners/replace_bases.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,623   copying build/lib/pyfastaq/runners/to_random_subset.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,628   copying build/lib/pyfastaq/runners/interleave.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,634   copying build/lib/pyfastaq/runners/scaffolds_to_contigs.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,639   copying build/lib/pyfastaq/runners/to_fake_qual.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,645   copying build/lib/pyfastaq/runners/to_mira_xml.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,650   copying build/lib/pyfastaq/runners/fasta_to_fastq.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,656   copying build/lib/pyfastaq/runners/enumerate_names.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,662   copying build/lib/pyfastaq/runners/get_seq_flanking_gaps.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,667   copying build/lib/pyfastaq/runners/merge.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,673   copying build/lib/pyfastaq/runners/caf_to_fastq.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,678   copying build/lib/pyfastaq/runners/to_unique_by_id.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,684   copying build/lib/pyfastaq/runners/expand_nucleotides.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,689   copying build/lib/pyfastaq/runners/trim_ends.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,694   copying build/lib/pyfastaq/runners/translate.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,700   copying build/lib/pyfastaq/runners/trim_Ns_at_end.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,705   copying build/lib/pyfastaq/runners/search_for_seq.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,711   copying build/lib/pyfastaq/runners/add_indels.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,718   copying build/lib/pyfastaq/runners/__init__.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,722   copying build/lib/pyfastaq/runners/trim_contigs.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,728   copying build/lib/pyfastaq/runners/to_tiling_bam.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,734   copying build/lib/pyfastaq/runners/sequence_trim.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,739   copying build/lib/pyfastaq/runners/version.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,745   copying build/lib/pyfastaq/runners/filter.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,751   copying build/lib/pyfastaq/runners/to_boulderio.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,756   copying build/lib/pyfastaq/runners/to_fasta.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T03:36:22,762   copying build/lib/pyfastaq/sequences.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-11T03:36:22,770   copying build/lib/pyfastaq/__init__.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-11T03:36:22,776   copying build/lib/pyfastaq/common.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-11T03:36:22,781   copying build/lib/pyfastaq/tasks.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-11T03:36:22,789   running install_egg_info
2020-09-11T03:36:22,837   running egg_info
2020-09-11T03:36:22,839   writing dependency_links to pyfastaq.egg-info/dependency_links.txt
2020-09-11T03:36:22,842   writing top-level names to pyfastaq.egg-info/top_level.txt
2020-09-11T03:36:22,845   writing pyfastaq.egg-info/PKG-INFO
2020-09-11T03:36:22,863   reading manifest file 'pyfastaq.egg-info/SOURCES.txt'
2020-09-11T03:36:22,895   reading manifest template 'MANIFEST.in'
2020-09-11T03:36:23,582   writing manifest file 'pyfastaq.egg-info/SOURCES.txt'
2020-09-11T03:36:23,587   Copying pyfastaq.egg-info to build/bdist.linux-armv7l/wheel/pyfastaq-3.11.1-py3.5.egg-info
2020-09-11T03:36:23,609   running install_scripts
2020-09-11T03:36:23,738   creating build/bdist.linux-armv7l/wheel/pyfastaq-3.11.1.data
2020-09-11T03:36:23,739   creating build/bdist.linux-armv7l/wheel/pyfastaq-3.11.1.data/scripts
2020-09-11T03:36:23,742   copying build/scripts-3.5/fastaq -> build/bdist.linux-armv7l/wheel/pyfastaq-3.11.1.data/scripts
2020-09-11T03:36:23,746   changing mode of build/bdist.linux-armv7l/wheel/pyfastaq-3.11.1.data/scripts/fastaq to 755
2020-09-11T03:36:23,801   creating build/bdist.linux-armv7l/wheel/pyfastaq-3.11.1.dist-info/WHEEL
2020-09-11T03:36:24,335   Building wheel for pyfastaq (setup.py): finished with status 'done'
2020-09-11T03:36:24,340   Created wheel for pyfastaq: filename=pyfastaq-3.11.1-py3-none-any.whl size=43359 sha256=e912487336d8c9264a8f7640e5badd94a75bf739ba8db9735294db45d07ff5e2
2020-09-11T03:36:24,341   Stored in directory: /tmp/pip-ephem-wheel-cache-1ywmk78_/wheels/7e/88/cf/0ecfa3e9660d767dea8f0f4033cdc6fa68cfef75e64165f991
2020-09-11T03:36:24,345 Successfully built pyfastaq
2020-09-11T03:36:24,361 Removed build tracker: '/tmp/pip-req-tracker-szcj_hv5'