2020-09-11T14:29:21,493 Created temporary directory: /tmp/pip-ephem-wheel-cache-14u6mp1k
2020-09-11T14:29:21,498 Created temporary directory: /tmp/pip-req-tracker-atnv54eo
2020-09-11T14:29:21,499 Initialized build tracking at /tmp/pip-req-tracker-atnv54eo
2020-09-11T14:29:21,500 Created build tracker: /tmp/pip-req-tracker-atnv54eo
2020-09-11T14:29:21,500 Entered build tracker: /tmp/pip-req-tracker-atnv54eo
2020-09-11T14:29:21,501 Created temporary directory: /tmp/pip-wheel-a4xu2rvu
2020-09-11T14:29:21,516 1 location(s) to search for versions of pyfastaq:
2020-09-11T14:29:21,516 * https://pypi.org/simple/pyfastaq/
2020-09-11T14:29:21,516 Fetching project page and analyzing links: https://pypi.org/simple/pyfastaq/
2020-09-11T14:29:21,518 Getting page https://pypi.org/simple/pyfastaq/
2020-09-11T14:29:21,522 Found index url https://pypi.org/simple
2020-09-11T14:29:21,828   Found link https://files.pythonhosted.org/packages/36/ed/d740797f95b7b113c0979dc56648ed219340ed21c4926fd72466c0cc88af/pyfastaq-3.0.1.tar.gz#sha256=abfdd057c03c53913e15af37b05fc47a865631b550a03d9145326dde4f599322 (from https://pypi.org/simple/pyfastaq/), version: 3.0.1
2020-09-11T14:29:21,829   Found link https://files.pythonhosted.org/packages/64/dd/cea4f3f3aa398245bb65484e767f9789238fcc04d3a4c5660ee874342b33/pyfastaq-3.2.0.tar.gz#sha256=24baa9013e5911918a7465a043bb97e61e3fd28f7021012217aa240744bec95f (from https://pypi.org/simple/pyfastaq/), version: 3.2.0
2020-09-11T14:29:21,830   Found link https://files.pythonhosted.org/packages/d5/f5/e57e945ac3f836f0525e5d9bf54a981c994444bf9de6445f87066ffe7650/pyfastaq-3.3.0.tar.gz#sha256=acca17e68fb07b6a3c71f46c85372b2119325d83fc0a08599fa8d1b6199cdd03 (from https://pypi.org/simple/pyfastaq/), version: 3.3.0
2020-09-11T14:29:21,831   Found link https://files.pythonhosted.org/packages/a6/d8/b080d44a23f57c0dfe387f97804b03992c3496877928c22c54c7112d3219/pyfastaq-3.3.1.tar.gz#sha256=94c6da60e8dfe582ac3db0beb337d0f4772d3a1ea408969d6446d81dba0d5751 (from https://pypi.org/simple/pyfastaq/), version: 3.3.1
2020-09-11T14:29:21,831   Found link https://files.pythonhosted.org/packages/4a/cc/127a596b8971d4ec81f69f0a76e60dc72bfe9d359d11ded08f8a0b447285/pyfastaq-3.4.0.tar.gz#sha256=e35e558f2b246a311c17441c99b9dc5e307fb749792e7041b20a1ba5ac138924 (from https://pypi.org/simple/pyfastaq/), version: 3.4.0
2020-09-11T14:29:21,832   Found link https://files.pythonhosted.org/packages/45/37/7a0dc69b3affdfac70919f337e08099c4eeaefedf2782d17a1f3e04bec46/pyfastaq-3.5.0.tar.gz#sha256=599b28db5a05072335eacd3cea458aff511239e34a9559aaf2e7fe94cce785a9 (from https://pypi.org/simple/pyfastaq/), version: 3.5.0
2020-09-11T14:29:21,833   Found link https://files.pythonhosted.org/packages/d4/99/5adb0efe820a9993fbcc0be844e5372227f5ca5cd55102461aa78a6ed9a0/pyfastaq-3.6.0.tar.gz#sha256=3a052466f89db1e1ac6cfb475117fdf8466ed319b62aabf9531e38f569b51588 (from https://pypi.org/simple/pyfastaq/), version: 3.6.0
2020-09-11T14:29:21,834   Found link https://files.pythonhosted.org/packages/83/66/76240bd0fadd6a0808596c930e8dc7cec25c45b5581f77996e8cad7250a8/pyfastaq-3.6.1.tar.gz#sha256=187245939ceeaaafe2145ff08662ef25a1a5fc7e06dbc0ddcb7c5bc4e5a90b8a (from https://pypi.org/simple/pyfastaq/), version: 3.6.1
2020-09-11T14:29:21,835   Found link https://files.pythonhosted.org/packages/48/16/a8c6b9f661682f0775f670dfa70e658e3aa2fad0f77d89b3f7fd4b1dc0c4/pyfastaq-3.8.0.tar.gz#sha256=9055bc04f0a669283c8d3925df64e4f9a54568e8b3c4e0de9da187e380d55865 (from https://pypi.org/simple/pyfastaq/), version: 3.8.0
2020-09-11T14:29:21,836   Found link https://files.pythonhosted.org/packages/f3/7e/8cf32f7a9513c1d67308b3252d1aa48de2ed7c94ea522d899124a3e064aa/pyfastaq-3.9.0.tar.gz#sha256=d840e56086c6e6e699b59083ccbc222bdcee234e06cdd49b12492e09a3ac4a8d (from https://pypi.org/simple/pyfastaq/), version: 3.9.0
2020-09-11T14:29:21,836   Found link https://files.pythonhosted.org/packages/66/76/4716b417ccecd9f084691160608a40a699a9174b2016d1d0c2cc05f8c439/pyfastaq-3.10.0.tar.gz#sha256=a09604f5143abf27280abbdfcdb85878f760380876a971139b9536955f1cb73c (from https://pypi.org/simple/pyfastaq/), version: 3.10.0
2020-09-11T14:29:21,837   Found link https://files.pythonhosted.org/packages/5b/e0/1b4256c16d9f09f79dd8fe56c4483ce9b4c6aa9759602af175320713d6c9/pyfastaq-3.10.1.tar.gz#sha256=96df96feacf3bdfce937e78886a4cc06005c1db27aede8f8e921fc438aaf4b01 (from https://pypi.org/simple/pyfastaq/), version: 3.10.1
2020-09-11T14:29:21,838   Found link https://files.pythonhosted.org/packages/72/f1/d6e984e10e854dee0bacc75c6b60716b9d7c1ac36a913f1f9215e68748e7/pyfastaq-3.11.0.tar.gz#sha256=343fa8eb4aa959c1d66050e2e864e4d3c49d80a41e3c51196a14df38220dba59 (from https://pypi.org/simple/pyfastaq/), version: 3.11.0
2020-09-11T14:29:21,839   Found link https://files.pythonhosted.org/packages/b2/32/2fdf9d19632d3931a1c962bacff999e4f0a27e5a36c450115f101890bea4/pyfastaq-3.11.1.tar.gz#sha256=bee81a896117c506a12f2a56f02eac10721c2a158adc9a6f88dfa31a6df727c2 (from https://pypi.org/simple/pyfastaq/), version: 3.11.1
2020-09-11T14:29:21,839   Found link https://files.pythonhosted.org/packages/c4/eb/bea30e05075961eecd4410b92cab6d417a38e4cdff4d3075e6c52121e4fe/pyfastaq-3.12.0.tar.gz#sha256=a3a03db385e6eaffa44b659594877bf95d78ac1b1c93d5498a7f0b9e4c4fe2aa (from https://pypi.org/simple/pyfastaq/), version: 3.12.0
2020-09-11T14:29:21,840   Found link https://files.pythonhosted.org/packages/99/59/9967177929c61cec55205a39e91df3dd7634397d8cb3b40ce66a296ab76b/pyfastaq-3.12.1.tar.gz#sha256=996dee7c5583b9c06c0a96a9e539d5f4218c084a3b2ee757fb245b4222b2a829 (from https://pypi.org/simple/pyfastaq/), version: 3.12.1
2020-09-11T14:29:21,841   Found link https://files.pythonhosted.org/packages/2a/46/6ece19838a79489556c97092e832bafeb46e7b28c52418a6c5a7568da999/pyfastaq-3.13.0.tar.gz#sha256=79bfe342e053d51efbc7a901489c62e996566b4baf0f33cde1caff3a387756af (from https://pypi.org/simple/pyfastaq/), version: 3.13.0
2020-09-11T14:29:21,842   Found link https://files.pythonhosted.org/packages/0e/5d/8b39442b62c43da835c89f4c244d037bc7fcd8b47b0c0fff6e8d9097a035/pyfastaq-3.14.0.tar.gz#sha256=54dc8cc8b3d24111f6939cf563833b8e9e78777b9cf7b82ca8ddec04aa1c05f2 (from https://pypi.org/simple/pyfastaq/), version: 3.14.0
2020-09-11T14:29:21,843   Found link https://files.pythonhosted.org/packages/32/db/235ff9020c825d547a11e449c315b0a8f90f1afdd5dcc78e89580f561f7f/pyfastaq-3.15.0.tar.gz#sha256=30013f38956535fddddedda03dc072e808704f6e026231dd1539869a08afcbe8 (from https://pypi.org/simple/pyfastaq/), version: 3.15.0
2020-09-11T14:29:21,843   Found link https://files.pythonhosted.org/packages/91/5e/cd2a8b4e3b601b89b9af2ecd706ffade96b6b2c89b2f8d50ab8a8bac3fed/pyfastaq-3.16.0.tar.gz#sha256=368f3f1752668283f5d1aac4ea80e9595a57dc92a7d4925d723407f862af0e4e (from https://pypi.org/simple/pyfastaq/), version: 3.16.0
2020-09-11T14:29:21,844   Found link https://files.pythonhosted.org/packages/28/9d/afbedb1994c9e9076d2bf87865ad74ed60a28cde651ce58952ac53534f28/pyfastaq-3.17.0.tar.gz#sha256=40c6dc0cea72c0ab91d10e5627a26dea1783b7e5e3edcfff8e1dc960bfd71cdc (from https://pypi.org/simple/pyfastaq/), version: 3.17.0
2020-09-11T14:29:21,861 Given no hashes to check 1 links for project 'pyfastaq': discarding no candidates
2020-09-11T14:29:21,862 Using version 3.15.0 (newest of versions: 3.15.0)
2020-09-11T14:29:21,870 Collecting pyfastaq==3.15.0
2020-09-11T14:29:21,874   Created temporary directory: /tmp/pip-unpack-2p4au3_7
2020-09-11T14:29:22,092   Downloading pyfastaq-3.15.0.tar.gz (49 kB)
2020-09-11T14:29:22,884   Added pyfastaq==3.15.0 from https://files.pythonhosted.org/packages/32/db/235ff9020c825d547a11e449c315b0a8f90f1afdd5dcc78e89580f561f7f/pyfastaq-3.15.0.tar.gz#sha256=30013f38956535fddddedda03dc072e808704f6e026231dd1539869a08afcbe8 to build tracker '/tmp/pip-req-tracker-atnv54eo'
2020-09-11T14:29:22,886     Running setup.py (path:/tmp/pip-wheel-a4xu2rvu/pyfastaq/setup.py) egg_info for package pyfastaq
2020-09-11T14:29:22,887     Created temporary directory: /tmp/pip-pip-egg-info-r188pkgq
2020-09-11T14:29:22,888     Running command python setup.py egg_info
2020-09-11T14:29:24,772     running egg_info
2020-09-11T14:29:24,777     creating /tmp/pip-pip-egg-info-r188pkgq/pyfastaq.egg-info
2020-09-11T14:29:24,781     writing /tmp/pip-pip-egg-info-r188pkgq/pyfastaq.egg-info/PKG-INFO
2020-09-11T14:29:24,784     writing top-level names to /tmp/pip-pip-egg-info-r188pkgq/pyfastaq.egg-info/top_level.txt
2020-09-11T14:29:24,786     writing dependency_links to /tmp/pip-pip-egg-info-r188pkgq/pyfastaq.egg-info/dependency_links.txt
2020-09-11T14:29:24,789     writing manifest file '/tmp/pip-pip-egg-info-r188pkgq/pyfastaq.egg-info/SOURCES.txt'
2020-09-11T14:29:25,105     reading manifest file '/tmp/pip-pip-egg-info-r188pkgq/pyfastaq.egg-info/SOURCES.txt'
2020-09-11T14:29:25,107     reading manifest template 'MANIFEST.in'
2020-09-11T14:29:25,631     writing manifest file '/tmp/pip-pip-egg-info-r188pkgq/pyfastaq.egg-info/SOURCES.txt'
2020-09-11T14:29:25,760   Source in /tmp/pip-wheel-a4xu2rvu/pyfastaq has version 3.15.0, which satisfies requirement pyfastaq==3.15.0 from https://files.pythonhosted.org/packages/32/db/235ff9020c825d547a11e449c315b0a8f90f1afdd5dcc78e89580f561f7f/pyfastaq-3.15.0.tar.gz#sha256=30013f38956535fddddedda03dc072e808704f6e026231dd1539869a08afcbe8
2020-09-11T14:29:25,761   Removed pyfastaq==3.15.0 from https://files.pythonhosted.org/packages/32/db/235ff9020c825d547a11e449c315b0a8f90f1afdd5dcc78e89580f561f7f/pyfastaq-3.15.0.tar.gz#sha256=30013f38956535fddddedda03dc072e808704f6e026231dd1539869a08afcbe8 from build tracker '/tmp/pip-req-tracker-atnv54eo'
2020-09-11T14:29:25,765 Building wheels for collected packages: pyfastaq
2020-09-11T14:29:25,773   Created temporary directory: /tmp/pip-wheel-rmzbq1cb
2020-09-11T14:29:25,775   Building wheel for pyfastaq (setup.py): started
2020-09-11T14:29:25,776   Destination directory: /tmp/pip-wheel-rmzbq1cb
2020-09-11T14:29:25,777   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-a4xu2rvu/pyfastaq/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-a4xu2rvu/pyfastaq/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-rmzbq1cb
2020-09-11T14:29:27,648   running bdist_wheel
2020-09-11T14:29:27,661   running build
2020-09-11T14:29:27,661   running build_py
2020-09-11T14:29:27,949   creating build
2020-09-11T14:29:27,950   creating build/lib
2020-09-11T14:29:27,951   creating build/lib/pyfastaq
2020-09-11T14:29:27,953   copying pyfastaq/tasks.py -> build/lib/pyfastaq
2020-09-11T14:29:27,958   copying pyfastaq/caf.py -> build/lib/pyfastaq
2020-09-11T14:29:27,962   copying pyfastaq/sequences.py -> build/lib/pyfastaq
2020-09-11T14:29:27,966   copying pyfastaq/__init__.py -> build/lib/pyfastaq
2020-09-11T14:29:27,969   copying pyfastaq/utils.py -> build/lib/pyfastaq
2020-09-11T14:29:27,973   copying pyfastaq/genetic_codes.py -> build/lib/pyfastaq
2020-09-11T14:29:27,977   copying pyfastaq/intervals.py -> build/lib/pyfastaq
2020-09-11T14:29:27,991   creating build/lib/pyfastaq/runners
2020-09-11T14:29:27,994   copying pyfastaq/runners/sort_by_size.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:27,998   copying pyfastaq/runners/reverse_complement.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,002   copying pyfastaq/runners/get_ids.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,005   copying pyfastaq/runners/to_fake_qual.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,009   copying pyfastaq/runners/filter.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,012   copying pyfastaq/runners/capillary_to_pairs.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,015   copying pyfastaq/runners/strip_illumina_suffix.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,021   copying pyfastaq/runners/make_random_contigs.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,026   copying pyfastaq/runners/deinterleave.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,031   copying pyfastaq/runners/sort_by_name.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,036   copying pyfastaq/runners/to_orfs_gff.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,040   copying pyfastaq/runners/merge.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,043   copying pyfastaq/runners/get_seq_flanking_gaps.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,046   copying pyfastaq/runners/fasta_to_fastq.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,050   copying pyfastaq/runners/translate.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,053   copying pyfastaq/runners/count_sequences.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,057   copying pyfastaq/runners/expand_nucleotides.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,062   copying pyfastaq/runners/__init__.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,067   copying pyfastaq/runners/to_mira_xml.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,072   copying pyfastaq/runners/enumerate_names.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,078   copying pyfastaq/runners/trim_Ns_at_end.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,081   copying pyfastaq/runners/interleave.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,085   copying pyfastaq/runners/trim_ends.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,088   copying pyfastaq/runners/to_fasta.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,092   copying pyfastaq/runners/to_perfect_reads.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,096   copying pyfastaq/runners/scaffolds_to_contigs.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,100   copying pyfastaq/runners/trim_contigs.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,105   copying pyfastaq/runners/add_indels.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,111   copying pyfastaq/runners/to_boulderio.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,116   copying pyfastaq/runners/caf_to_fastq.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,121   copying pyfastaq/runners/split_by_base_count.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,124   copying pyfastaq/runners/replace_bases.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,127   copying pyfastaq/runners/to_tiling_bam.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,130   copying pyfastaq/runners/chunker.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,134   copying pyfastaq/runners/to_random_subset.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,137   copying pyfastaq/runners/acgtn_only.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,143   copying pyfastaq/runners/to_unique_by_id.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,148   copying pyfastaq/runners/search_for_seq.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,153   copying pyfastaq/runners/sequence_trim.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,158   copying pyfastaq/runners/version.py -> build/lib/pyfastaq/runners
2020-09-11T14:29:28,168   running build_scripts
2020-09-11T14:29:28,169   creating build/scripts-3.5
2020-09-11T14:29:28,171   copying and adjusting scripts/fastaq -> build/scripts-3.5
2020-09-11T14:29:28,174   changing mode of build/scripts-3.5/fastaq from 644 to 755
2020-09-11T14:29:28,179   installing to build/bdist.linux-armv7l/wheel
2020-09-11T14:29:28,180   running install
2020-09-11T14:29:28,182   running install_lib
2020-09-11T14:29:28,188   creating build/bdist.linux-armv7l
2020-09-11T14:29:28,189   creating build/bdist.linux-armv7l/wheel
2020-09-11T14:29:28,192   creating build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-11T14:29:28,194   copying build/lib/pyfastaq/tasks.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-11T14:29:28,199   copying build/lib/pyfastaq/caf.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-11T14:29:28,202   copying build/lib/pyfastaq/sequences.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-11T14:29:28,207   copying build/lib/pyfastaq/__init__.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-11T14:29:28,210   copying build/lib/pyfastaq/utils.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-11T14:29:28,215   creating build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,216   copying build/lib/pyfastaq/runners/sort_by_size.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,220   copying build/lib/pyfastaq/runners/reverse_complement.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,225   copying build/lib/pyfastaq/runners/get_ids.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,230   copying build/lib/pyfastaq/runners/to_fake_qual.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,235   copying build/lib/pyfastaq/runners/filter.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,240   copying build/lib/pyfastaq/runners/capillary_to_pairs.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,244   copying build/lib/pyfastaq/runners/strip_illumina_suffix.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,247   copying build/lib/pyfastaq/runners/make_random_contigs.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,250   copying build/lib/pyfastaq/runners/deinterleave.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,254   copying build/lib/pyfastaq/runners/sort_by_name.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,257   copying build/lib/pyfastaq/runners/to_orfs_gff.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,260   copying build/lib/pyfastaq/runners/merge.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,265   copying build/lib/pyfastaq/runners/get_seq_flanking_gaps.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,270   copying build/lib/pyfastaq/runners/fasta_to_fastq.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,275   copying build/lib/pyfastaq/runners/translate.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,280   copying build/lib/pyfastaq/runners/count_sequences.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,285   copying build/lib/pyfastaq/runners/expand_nucleotides.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,290   copying build/lib/pyfastaq/runners/__init__.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,295   copying build/lib/pyfastaq/runners/to_mira_xml.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,300   copying build/lib/pyfastaq/runners/enumerate_names.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,304   copying build/lib/pyfastaq/runners/trim_Ns_at_end.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,308   copying build/lib/pyfastaq/runners/interleave.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,311   copying build/lib/pyfastaq/runners/trim_ends.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,314   copying build/lib/pyfastaq/runners/to_fasta.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,317   copying build/lib/pyfastaq/runners/to_perfect_reads.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,321   copying build/lib/pyfastaq/runners/scaffolds_to_contigs.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,324   copying build/lib/pyfastaq/runners/trim_contigs.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,328   copying build/lib/pyfastaq/runners/add_indels.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,332   copying build/lib/pyfastaq/runners/to_boulderio.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,335   copying build/lib/pyfastaq/runners/caf_to_fastq.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,338   copying build/lib/pyfastaq/runners/split_by_base_count.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,341   copying build/lib/pyfastaq/runners/replace_bases.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,346   copying build/lib/pyfastaq/runners/to_tiling_bam.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,351   copying build/lib/pyfastaq/runners/chunker.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,356   copying build/lib/pyfastaq/runners/to_random_subset.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,361   copying build/lib/pyfastaq/runners/acgtn_only.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,365   copying build/lib/pyfastaq/runners/to_unique_by_id.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,369   copying build/lib/pyfastaq/runners/search_for_seq.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,374   copying build/lib/pyfastaq/runners/sequence_trim.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,379   copying build/lib/pyfastaq/runners/version.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T14:29:28,383   copying build/lib/pyfastaq/genetic_codes.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-11T14:29:28,388   copying build/lib/pyfastaq/intervals.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-11T14:29:28,391   running install_egg_info
2020-09-11T14:29:28,431   running egg_info
2020-09-11T14:29:28,434   writing top-level names to pyfastaq.egg-info/top_level.txt
2020-09-11T14:29:28,437   writing dependency_links to pyfastaq.egg-info/dependency_links.txt
2020-09-11T14:29:28,440   writing pyfastaq.egg-info/PKG-INFO
2020-09-11T14:29:28,456   reading manifest file 'pyfastaq.egg-info/SOURCES.txt'
2020-09-11T14:29:28,484   reading manifest template 'MANIFEST.in'
2020-09-11T14:29:29,011   writing manifest file 'pyfastaq.egg-info/SOURCES.txt'
2020-09-11T14:29:29,015   Copying pyfastaq.egg-info to build/bdist.linux-armv7l/wheel/pyfastaq-3.15.0-py3.5.egg-info
2020-09-11T14:29:29,058   running install_scripts
2020-09-11T14:29:29,172   creating build/bdist.linux-armv7l/wheel/pyfastaq-3.15.0.data
2020-09-11T14:29:29,174   creating build/bdist.linux-armv7l/wheel/pyfastaq-3.15.0.data/scripts
2020-09-11T14:29:29,177   copying build/scripts-3.5/fastaq -> build/bdist.linux-armv7l/wheel/pyfastaq-3.15.0.data/scripts
2020-09-11T14:29:29,182   changing mode of build/bdist.linux-armv7l/wheel/pyfastaq-3.15.0.data/scripts/fastaq to 755
2020-09-11T14:29:29,218   creating build/bdist.linux-armv7l/wheel/pyfastaq-3.15.0.dist-info/WHEEL
2020-09-11T14:29:29,556   Building wheel for pyfastaq (setup.py): finished with status 'done'
2020-09-11T14:29:29,561   Created wheel for pyfastaq: filename=pyfastaq-3.15.0-py3-none-any.whl size=44674 sha256=8e0d3fbe737bdcf56329481689b03e56f98fbfdce51d0101b4e82e93ff686af5
2020-09-11T14:29:29,561   Stored in directory: /tmp/pip-ephem-wheel-cache-14u6mp1k/wheels/f3/46/58/0883346f1d8170be35f6cb09d0dc15a369965137964e19157d
2020-09-11T14:29:29,565 Successfully built pyfastaq
2020-09-11T14:29:29,573 Removed build tracker: '/tmp/pip-req-tracker-atnv54eo'