2020-09-11T16:53:07,611 Created temporary directory: /tmp/pip-ephem-wheel-cache-3hz9xkcc
2020-09-11T16:53:07,617 Created temporary directory: /tmp/pip-req-tracker-ff2_0svi
2020-09-11T16:53:07,617 Initialized build tracking at /tmp/pip-req-tracker-ff2_0svi
2020-09-11T16:53:07,618 Created build tracker: /tmp/pip-req-tracker-ff2_0svi
2020-09-11T16:53:07,618 Entered build tracker: /tmp/pip-req-tracker-ff2_0svi
2020-09-11T16:53:07,619 Created temporary directory: /tmp/pip-wheel-m_7vlzdq
2020-09-11T16:53:07,635 1 location(s) to search for versions of oncodrivefml:
2020-09-11T16:53:07,635 * https://pypi.org/simple/oncodrivefml/
2020-09-11T16:53:07,635 Fetching project page and analyzing links: https://pypi.org/simple/oncodrivefml/
2020-09-11T16:53:07,637 Getting page https://pypi.org/simple/oncodrivefml/
2020-09-11T16:53:07,641 Found index url https://pypi.org/simple
2020-09-11T16:53:07,846   Found link https://files.pythonhosted.org/packages/db/67/1739dcef8c63626fda8b6a772cd8d82710adcf4e7a6dbb3185acb54af065/oncodrivefml-1.0.1.tar.gz#sha256=85568115bfa2ae7d1b77cd046fbcf97cd7fc26e3820611dff782ed96ef305161 (from https://pypi.org/simple/oncodrivefml/), version: 1.0.1
2020-09-11T16:53:07,847   Found link https://files.pythonhosted.org/packages/4c/5d/8770a0cf7425743d3b67ea91207dfc619f7a0826df1f82aac907388a9709/oncodrivefml-2.0.1.tar.gz#sha256=02cf92cea9d9bc0b7cdc8a2365a16d3d11b8dc829193bd31254831616064d5a9 (from https://pypi.org/simple/oncodrivefml/), version: 2.0.1
2020-09-11T16:53:07,847   Found link https://files.pythonhosted.org/packages/37/ec/1b093916cb9c9ba337fa9ae09a5d828e797f40e41050d1cbb59cf6eecdae/oncodrivefml-2.0.2.tar.gz#sha256=7b7ba10f48efeafe259627f2f1d0400189e23c3ef805c306679d014b6eac411f (from https://pypi.org/simple/oncodrivefml/), version: 2.0.2
2020-09-11T16:53:07,848   Found link https://files.pythonhosted.org/packages/ba/c9/edbcf5450123b824ca838b5c72d4a799fe87800a2f425eddd816f3460596/oncodrivefml-2.0.3.tar.gz#sha256=b2c1571bc9ae0d0cf17c725479a5197f2ea227a5fdc700d9576264d50e6f23f0 (from https://pypi.org/simple/oncodrivefml/), version: 2.0.3
2020-09-11T16:53:07,849   Found link https://files.pythonhosted.org/packages/ba/68/07a64ac621ccc248d4c8d2757cfb15c847ee2bc4e061a74b0e669698ba93/oncodrivefml-2.1.2.tar.gz#sha256=198b891604b2ff000fc973a779a89648957599ecdcccaefbacf9225f575c988a (from https://pypi.org/simple/oncodrivefml/), version: 2.1.2
2020-09-11T16:53:07,850   Found link https://files.pythonhosted.org/packages/68/6c/c86613b66f24ab8ff575c270865e9bf6fdd167bc52570c42a0114c72f65e/oncodrivefml-2.1.3.tar.gz#sha256=beba29277206e276b8d5face41e0b916c4b2089ef7a6bb707f0983b7eb2cf0a1 (from https://pypi.org/simple/oncodrivefml/), version: 2.1.3
2020-09-11T16:53:07,850   Found link https://files.pythonhosted.org/packages/27/6c/5b59d3c305a25b56ec31627ba1c5fbbebe98525ffd68a242b20d448e92b6/oncodrivefml-2.2.0.tar.gz#sha256=62c63c09424e4992c3d501b81a62fa496ae96ceae5f5358636f414d2eb55ac3f (from https://pypi.org/simple/oncodrivefml/), version: 2.2.0
2020-09-11T16:53:07,851   Found link https://files.pythonhosted.org/packages/05/ae/a3359962a4ff891c830429f227d49514374de04b06435fc4b9bd7f68620b/oncodrivefml-2.3.0.tar.gz#sha256=9ef35231696a9b01867d3b89a94b9d93d16b75357497dd17544a1670b44449f9 (from https://pypi.org/simple/oncodrivefml/), version: 2.3.0
2020-09-11T16:53:07,862 Given no hashes to check 1 links for project 'oncodrivefml': discarding no candidates
2020-09-11T16:53:07,863 Using version 2.0.2 (newest of versions: 2.0.2)
2020-09-11T16:53:07,871 Collecting oncodrivefml==2.0.2
2020-09-11T16:53:07,875   Created temporary directory: /tmp/pip-unpack-zy67i69i
2020-09-11T16:53:08,265   Downloading oncodrivefml-2.0.2.tar.gz (609 kB)
2020-09-11T16:53:08,576   Added oncodrivefml==2.0.2 from https://files.pythonhosted.org/packages/37/ec/1b093916cb9c9ba337fa9ae09a5d828e797f40e41050d1cbb59cf6eecdae/oncodrivefml-2.0.2.tar.gz#sha256=7b7ba10f48efeafe259627f2f1d0400189e23c3ef805c306679d014b6eac411f to build tracker '/tmp/pip-req-tracker-ff2_0svi'
2020-09-11T16:53:08,578     Running setup.py (path:/tmp/pip-wheel-m_7vlzdq/oncodrivefml/setup.py) egg_info for package oncodrivefml
2020-09-11T16:53:08,579     Created temporary directory: /tmp/pip-pip-egg-info-630lkhyi
2020-09-11T16:53:08,580     Running command python setup.py egg_info
2020-09-11T16:53:10,493     running egg_info
2020-09-11T16:53:10,498     creating /tmp/pip-pip-egg-info-630lkhyi/oncodrivefml.egg-info
2020-09-11T16:53:10,499     writing entry points to /tmp/pip-pip-egg-info-630lkhyi/oncodrivefml.egg-info/entry_points.txt
2020-09-11T16:53:10,502     writing dependency_links to /tmp/pip-pip-egg-info-630lkhyi/oncodrivefml.egg-info/dependency_links.txt
2020-09-11T16:53:10,504     writing requirements to /tmp/pip-pip-egg-info-630lkhyi/oncodrivefml.egg-info/requires.txt
2020-09-11T16:53:10,506     writing /tmp/pip-pip-egg-info-630lkhyi/oncodrivefml.egg-info/PKG-INFO
2020-09-11T16:53:10,509     writing top-level names to /tmp/pip-pip-egg-info-630lkhyi/oncodrivefml.egg-info/top_level.txt
2020-09-11T16:53:10,512     writing manifest file '/tmp/pip-pip-egg-info-630lkhyi/oncodrivefml.egg-info/SOURCES.txt'
2020-09-11T16:53:10,944     reading manifest file '/tmp/pip-pip-egg-info-630lkhyi/oncodrivefml.egg-info/SOURCES.txt'
2020-09-11T16:53:10,948     reading manifest template 'MANIFEST.in'
2020-09-11T16:53:10,950     warning: no previously-included files matching '*.c' found anywhere in distribution
2020-09-11T16:53:10,952     warning: no previously-included files matching '*.so' found anywhere in distribution
2020-09-11T16:53:10,957     writing manifest file '/tmp/pip-pip-egg-info-630lkhyi/oncodrivefml.egg-info/SOURCES.txt'
2020-09-11T16:53:11,101   Source in /tmp/pip-wheel-m_7vlzdq/oncodrivefml has version 2.0.2, which satisfies requirement oncodrivefml==2.0.2 from https://files.pythonhosted.org/packages/37/ec/1b093916cb9c9ba337fa9ae09a5d828e797f40e41050d1cbb59cf6eecdae/oncodrivefml-2.0.2.tar.gz#sha256=7b7ba10f48efeafe259627f2f1d0400189e23c3ef805c306679d014b6eac411f
2020-09-11T16:53:11,103   Removed oncodrivefml==2.0.2 from https://files.pythonhosted.org/packages/37/ec/1b093916cb9c9ba337fa9ae09a5d828e797f40e41050d1cbb59cf6eecdae/oncodrivefml-2.0.2.tar.gz#sha256=7b7ba10f48efeafe259627f2f1d0400189e23c3ef805c306679d014b6eac411f from build tracker '/tmp/pip-req-tracker-ff2_0svi'
2020-09-11T16:53:11,106 Building wheels for collected packages: oncodrivefml
2020-09-11T16:53:11,112   Created temporary directory: /tmp/pip-wheel-u9qg2h5u
2020-09-11T16:53:11,113   Building wheel for oncodrivefml (setup.py): started
2020-09-11T16:53:11,114   Destination directory: /tmp/pip-wheel-u9qg2h5u
2020-09-11T16:53:11,114   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-m_7vlzdq/oncodrivefml/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-m_7vlzdq/oncodrivefml/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-u9qg2h5u
2020-09-11T16:53:13,143   running bdist_wheel
2020-09-11T16:53:13,157   running build
2020-09-11T16:53:13,158   running build_py
2020-09-11T16:53:13,450   creating build
2020-09-11T16:53:13,451   creating build/lib.linux-armv7l-3.5
2020-09-11T16:53:13,452   creating build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T16:53:13,454   copying oncodrivefml/main.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T16:53:13,459   copying oncodrivefml/signature.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T16:53:13,463   copying oncodrivefml/scores.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T16:53:13,467   copying oncodrivefml/compute.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T16:53:13,470   copying oncodrivefml/load.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T16:53:13,474   copying oncodrivefml/indels.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T16:53:13,478   copying oncodrivefml/__init__.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T16:53:13,481   copying oncodrivefml/utils.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T16:53:13,484   copying oncodrivefml/walker.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T16:53:13,489   copying oncodrivefml/stats.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T16:53:13,495   copying oncodrivefml/config.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T16:53:13,500   copying oncodrivefml/store.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T16:53:13,507   copying oncodrivefml/mtc.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T16:53:13,511   creating build/lib.linux-armv7l-3.5/oncodrivefml/executors
2020-09-11T16:53:13,512   copying oncodrivefml/executors/__init__.py -> build/lib.linux-armv7l-3.5/oncodrivefml/executors
2020-09-11T16:53:13,515   copying oncodrivefml/executors/bymutation.py -> build/lib.linux-armv7l-3.5/oncodrivefml/executors
2020-09-11T16:53:13,519   copying oncodrivefml/executors/bysample.py -> build/lib.linux-armv7l-3.5/oncodrivefml/executors
2020-09-11T16:53:13,522   copying oncodrivefml/executors/element.py -> build/lib.linux-armv7l-3.5/oncodrivefml/executors
2020-09-11T16:53:13,541   copying oncodrivefml/ensembl_genes_75.txt.gz -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T16:53:13,575   copying oncodrivefml/oncodrivefml_v2.conf.template -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T16:53:13,582   copying oncodrivefml/oncodrivefml_v2.conf.template.spec -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T16:53:13,588   copying oncodrivefml/walker_cython.pyx -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T16:53:13,595   running build_ext
2020-09-11T16:53:13,751   cythoning oncodrivefml/walker_cython.pyx to oncodrivefml/walker_cython.c
2020-09-11T16:53:19,537   building 'oncodrivefml.walker_cython' extension
2020-09-11T16:53:19,539   creating build/temp.linux-armv7l-3.5
2020-09-11T16:53:19,540   creating build/temp.linux-armv7l-3.5/oncodrivefml
2020-09-11T16:53:19,542   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c oncodrivefml/walker_cython.c -o build/temp.linux-armv7l-3.5/oncodrivefml/walker_cython.o
2020-09-11T16:53:34,154   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/oncodrivefml/walker_cython.o -o build/lib.linux-armv7l-3.5/oncodrivefml/walker_cython.cpython-35m-arm-linux-gnueabihf.so
2020-09-11T16:53:34,357   installing to build/bdist.linux-armv7l/wheel
2020-09-11T16:53:34,358   running install
2020-09-11T16:53:34,361   running install_lib
2020-09-11T16:53:34,373   creating build/bdist.linux-armv7l
2020-09-11T16:53:34,375   creating build/bdist.linux-armv7l/wheel
2020-09-11T16:53:34,379   creating build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:53:34,381   copying build/lib.linux-armv7l-3.5/oncodrivefml/main.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:53:34,385   copying build/lib.linux-armv7l-3.5/oncodrivefml/signature.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:53:34,389   copying build/lib.linux-armv7l-3.5/oncodrivefml/scores.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:53:34,394   copying build/lib.linux-armv7l-3.5/oncodrivefml/compute.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:53:34,397   copying build/lib.linux-armv7l-3.5/oncodrivefml/oncodrivefml_v2.conf.template.spec -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:53:34,400   copying build/lib.linux-armv7l-3.5/oncodrivefml/load.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:53:34,405   creating build/bdist.linux-armv7l/wheel/oncodrivefml/executors
2020-09-11T16:53:34,406   copying build/lib.linux-armv7l-3.5/oncodrivefml/executors/__init__.py -> build/bdist.linux-armv7l/wheel/oncodrivefml/executors
2020-09-11T16:53:34,409   copying build/lib.linux-armv7l-3.5/oncodrivefml/executors/bymutation.py -> build/bdist.linux-armv7l/wheel/oncodrivefml/executors
2020-09-11T16:53:34,412   copying build/lib.linux-armv7l-3.5/oncodrivefml/executors/bysample.py -> build/bdist.linux-armv7l/wheel/oncodrivefml/executors
2020-09-11T16:53:34,416   copying build/lib.linux-armv7l-3.5/oncodrivefml/executors/element.py -> build/bdist.linux-armv7l/wheel/oncodrivefml/executors
2020-09-11T16:53:34,420   copying build/lib.linux-armv7l-3.5/oncodrivefml/indels.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:53:34,426   copying build/lib.linux-armv7l-3.5/oncodrivefml/__init__.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:53:34,431   copying build/lib.linux-armv7l-3.5/oncodrivefml/oncodrivefml_v2.conf.template -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:53:34,437   copying build/lib.linux-armv7l-3.5/oncodrivefml/utils.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:53:34,441   copying build/lib.linux-armv7l-3.5/oncodrivefml/walker_cython.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:53:34,467   copying build/lib.linux-armv7l-3.5/oncodrivefml/walker.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:53:34,471   copying build/lib.linux-armv7l-3.5/oncodrivefml/stats.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:53:34,478   copying build/lib.linux-armv7l-3.5/oncodrivefml/config.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:53:34,483   copying build/lib.linux-armv7l-3.5/oncodrivefml/store.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:53:34,490   copying build/lib.linux-armv7l-3.5/oncodrivefml/mtc.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:53:34,495   copying build/lib.linux-armv7l-3.5/oncodrivefml/walker_cython.pyx -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:53:34,500   copying build/lib.linux-armv7l-3.5/oncodrivefml/ensembl_genes_75.txt.gz -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:53:34,530   running install_egg_info
2020-09-11T16:53:34,576   running egg_info
2020-09-11T16:53:34,577   writing top-level names to oncodrivefml.egg-info/top_level.txt
2020-09-11T16:53:34,580   writing dependency_links to oncodrivefml.egg-info/dependency_links.txt
2020-09-11T16:53:34,582   writing oncodrivefml.egg-info/PKG-INFO
2020-09-11T16:53:34,585   writing entry points to oncodrivefml.egg-info/entry_points.txt
2020-09-11T16:53:34,587   writing requirements to oncodrivefml.egg-info/requires.txt
2020-09-11T16:53:34,601   reading manifest file 'oncodrivefml.egg-info/SOURCES.txt'
2020-09-11T16:53:34,606   reading manifest template 'MANIFEST.in'
2020-09-11T16:53:34,610   warning: no previously-included files matching '*.so' found anywhere in distribution
2020-09-11T16:53:34,617   writing manifest file 'oncodrivefml.egg-info/SOURCES.txt'
2020-09-11T16:53:34,619   Copying oncodrivefml.egg-info to build/bdist.linux-armv7l/wheel/oncodrivefml-2.0.2-py3.5.egg-info
2020-09-11T16:53:34,641   running install_scripts
2020-09-11T16:53:34,796   creating build/bdist.linux-armv7l/wheel/oncodrivefml-2.0.2.dist-info/WHEEL
2020-09-11T16:53:35,628   Building wheel for oncodrivefml (setup.py): finished with status 'done'
2020-09-11T16:53:35,643   Created wheel for oncodrivefml: filename=oncodrivefml-2.0.2-cp35-cp35m-linux_armv7l.whl size=800382 sha256=7470a73cbd6cbf60b657217f32eec92c796639de94896b3fe61fc8e16ea5c991
2020-09-11T16:53:35,644   Stored in directory: /tmp/pip-ephem-wheel-cache-3hz9xkcc/wheels/1f/91/dc/dc90082eb19f5c7ba37198d7ab4a9d2a15c74e824614b5fb4f
2020-09-11T16:53:35,647 Successfully built oncodrivefml
2020-09-11T16:53:36,001 Removed build tracker: '/tmp/pip-req-tracker-ff2_0svi'