2020-09-11T16:55:02,578 Created temporary directory: /tmp/pip-ephem-wheel-cache-o8eytshe 2020-09-11T16:55:02,580 Created temporary directory: /tmp/pip-req-tracker-xvv0ypis 2020-09-11T16:55:02,581 Initialized build tracking at /tmp/pip-req-tracker-xvv0ypis 2020-09-11T16:55:02,581 Created build tracker: /tmp/pip-req-tracker-xvv0ypis 2020-09-11T16:55:02,581 Entered build tracker: /tmp/pip-req-tracker-xvv0ypis 2020-09-11T16:55:02,582 Created temporary directory: /tmp/pip-wheel-mtkwba54 2020-09-11T16:55:02,591 1 location(s) to search for versions of oncodrivefml: 2020-09-11T16:55:02,591 * https://pypi.org/simple/oncodrivefml/ 2020-09-11T16:55:02,591 Fetching project page and analyzing links: https://pypi.org/simple/oncodrivefml/ 2020-09-11T16:55:02,592 Getting page https://pypi.org/simple/oncodrivefml/ 2020-09-11T16:55:02,593 Found index url https://pypi.org/simple 2020-09-11T16:55:02,682 Found link https://files.pythonhosted.org/packages/db/67/1739dcef8c63626fda8b6a772cd8d82710adcf4e7a6dbb3185acb54af065/oncodrivefml-1.0.1.tar.gz#sha256=85568115bfa2ae7d1b77cd046fbcf97cd7fc26e3820611dff782ed96ef305161 (from https://pypi.org/simple/oncodrivefml/), version: 1.0.1 2020-09-11T16:55:02,683 Found link https://files.pythonhosted.org/packages/4c/5d/8770a0cf7425743d3b67ea91207dfc619f7a0826df1f82aac907388a9709/oncodrivefml-2.0.1.tar.gz#sha256=02cf92cea9d9bc0b7cdc8a2365a16d3d11b8dc829193bd31254831616064d5a9 (from https://pypi.org/simple/oncodrivefml/), version: 2.0.1 2020-09-11T16:55:02,683 Found link https://files.pythonhosted.org/packages/37/ec/1b093916cb9c9ba337fa9ae09a5d828e797f40e41050d1cbb59cf6eecdae/oncodrivefml-2.0.2.tar.gz#sha256=7b7ba10f48efeafe259627f2f1d0400189e23c3ef805c306679d014b6eac411f (from https://pypi.org/simple/oncodrivefml/), version: 2.0.2 2020-09-11T16:55:02,683 Found link https://files.pythonhosted.org/packages/ba/c9/edbcf5450123b824ca838b5c72d4a799fe87800a2f425eddd816f3460596/oncodrivefml-2.0.3.tar.gz#sha256=b2c1571bc9ae0d0cf17c725479a5197f2ea227a5fdc700d9576264d50e6f23f0 (from https://pypi.org/simple/oncodrivefml/), version: 2.0.3 2020-09-11T16:55:02,684 Found link https://files.pythonhosted.org/packages/ba/68/07a64ac621ccc248d4c8d2757cfb15c847ee2bc4e061a74b0e669698ba93/oncodrivefml-2.1.2.tar.gz#sha256=198b891604b2ff000fc973a779a89648957599ecdcccaefbacf9225f575c988a (from https://pypi.org/simple/oncodrivefml/), version: 2.1.2 2020-09-11T16:55:02,684 Found link https://files.pythonhosted.org/packages/68/6c/c86613b66f24ab8ff575c270865e9bf6fdd167bc52570c42a0114c72f65e/oncodrivefml-2.1.3.tar.gz#sha256=beba29277206e276b8d5face41e0b916c4b2089ef7a6bb707f0983b7eb2cf0a1 (from https://pypi.org/simple/oncodrivefml/), version: 2.1.3 2020-09-11T16:55:02,684 Found link https://files.pythonhosted.org/packages/27/6c/5b59d3c305a25b56ec31627ba1c5fbbebe98525ffd68a242b20d448e92b6/oncodrivefml-2.2.0.tar.gz#sha256=62c63c09424e4992c3d501b81a62fa496ae96ceae5f5358636f414d2eb55ac3f (from https://pypi.org/simple/oncodrivefml/), version: 2.2.0 2020-09-11T16:55:02,684 Found link https://files.pythonhosted.org/packages/05/ae/a3359962a4ff891c830429f227d49514374de04b06435fc4b9bd7f68620b/oncodrivefml-2.3.0.tar.gz#sha256=9ef35231696a9b01867d3b89a94b9d93d16b75357497dd17544a1670b44449f9 (from https://pypi.org/simple/oncodrivefml/), version: 2.3.0 2020-09-11T16:55:02,689 Given no hashes to check 1 links for project 'oncodrivefml': discarding no candidates 2020-09-11T16:55:02,690 Using version 2.0.1 (newest of versions: 2.0.1) 2020-09-11T16:55:02,693 Collecting oncodrivefml==2.0.1 2020-09-11T16:55:02,695 Created temporary directory: /tmp/pip-unpack-aa7aej56 2020-09-11T16:55:02,741 Downloading oncodrivefml-2.0.1.tar.gz (609 kB) 2020-09-11T16:55:02,899 Added oncodrivefml==2.0.1 from https://files.pythonhosted.org/packages/4c/5d/8770a0cf7425743d3b67ea91207dfc619f7a0826df1f82aac907388a9709/oncodrivefml-2.0.1.tar.gz#sha256=02cf92cea9d9bc0b7cdc8a2365a16d3d11b8dc829193bd31254831616064d5a9 to build tracker '/tmp/pip-req-tracker-xvv0ypis' 2020-09-11T16:55:02,900 Running setup.py (path:/tmp/pip-wheel-mtkwba54/oncodrivefml/setup.py) egg_info for package oncodrivefml 2020-09-11T16:55:02,901 Created temporary directory: /tmp/pip-pip-egg-info-mfxu0hqf 2020-09-11T16:55:02,901 Running command python setup.py egg_info 2020-09-11T16:55:04,003 running egg_info 2020-09-11T16:55:04,005 creating /tmp/pip-pip-egg-info-mfxu0hqf/oncodrivefml.egg-info 2020-09-11T16:55:04,006 writing /tmp/pip-pip-egg-info-mfxu0hqf/oncodrivefml.egg-info/PKG-INFO 2020-09-11T16:55:04,008 writing dependency_links to /tmp/pip-pip-egg-info-mfxu0hqf/oncodrivefml.egg-info/dependency_links.txt 2020-09-11T16:55:04,009 writing entry points to /tmp/pip-pip-egg-info-mfxu0hqf/oncodrivefml.egg-info/entry_points.txt 2020-09-11T16:55:04,011 writing requirements to /tmp/pip-pip-egg-info-mfxu0hqf/oncodrivefml.egg-info/requires.txt 2020-09-11T16:55:04,012 writing top-level names to /tmp/pip-pip-egg-info-mfxu0hqf/oncodrivefml.egg-info/top_level.txt 2020-09-11T16:55:04,013 writing manifest file '/tmp/pip-pip-egg-info-mfxu0hqf/oncodrivefml.egg-info/SOURCES.txt' 2020-09-11T16:55:04,328 reading manifest file '/tmp/pip-pip-egg-info-mfxu0hqf/oncodrivefml.egg-info/SOURCES.txt' 2020-09-11T16:55:04,330 reading manifest template 'MANIFEST.in' 2020-09-11T16:55:04,332 warning: no previously-included files matching '*.c' found anywhere in distribution 2020-09-11T16:55:04,332 warning: no previously-included files matching '*.so' found anywhere in distribution 2020-09-11T16:55:04,335 writing manifest file '/tmp/pip-pip-egg-info-mfxu0hqf/oncodrivefml.egg-info/SOURCES.txt' 2020-09-11T16:55:04,405 Source in /tmp/pip-wheel-mtkwba54/oncodrivefml has version 2.0.1, which satisfies requirement oncodrivefml==2.0.1 from https://files.pythonhosted.org/packages/4c/5d/8770a0cf7425743d3b67ea91207dfc619f7a0826df1f82aac907388a9709/oncodrivefml-2.0.1.tar.gz#sha256=02cf92cea9d9bc0b7cdc8a2365a16d3d11b8dc829193bd31254831616064d5a9 2020-09-11T16:55:04,406 Removed oncodrivefml==2.0.1 from https://files.pythonhosted.org/packages/4c/5d/8770a0cf7425743d3b67ea91207dfc619f7a0826df1f82aac907388a9709/oncodrivefml-2.0.1.tar.gz#sha256=02cf92cea9d9bc0b7cdc8a2365a16d3d11b8dc829193bd31254831616064d5a9 from build tracker '/tmp/pip-req-tracker-xvv0ypis' 2020-09-11T16:55:04,408 Building wheels for collected packages: oncodrivefml 2020-09-11T16:55:04,412 Created temporary directory: /tmp/pip-wheel-2srqatel 2020-09-11T16:55:04,413 Building wheel for oncodrivefml (setup.py): started 2020-09-11T16:55:04,413 Destination directory: /tmp/pip-wheel-2srqatel 2020-09-11T16:55:04,413 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-mtkwba54/oncodrivefml/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-mtkwba54/oncodrivefml/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-2srqatel 2020-09-11T16:55:05,406 running bdist_wheel 2020-09-11T16:55:05,412 running build 2020-09-11T16:55:05,413 running build_py 2020-09-11T16:55:05,543 creating build 2020-09-11T16:55:05,543 creating build/lib.linux-armv7l-3.7 2020-09-11T16:55:05,544 creating build/lib.linux-armv7l-3.7/oncodrivefml 2020-09-11T16:55:05,545 copying oncodrivefml/__init__.py -> build/lib.linux-armv7l-3.7/oncodrivefml 2020-09-11T16:55:05,547 copying oncodrivefml/stats.py -> build/lib.linux-armv7l-3.7/oncodrivefml 2020-09-11T16:55:05,549 copying oncodrivefml/main.py -> build/lib.linux-armv7l-3.7/oncodrivefml 2020-09-11T16:55:05,551 copying oncodrivefml/signature.py -> build/lib.linux-armv7l-3.7/oncodrivefml 2020-09-11T16:55:05,553 copying oncodrivefml/compute.py -> build/lib.linux-armv7l-3.7/oncodrivefml 2020-09-11T16:55:05,555 copying oncodrivefml/store.py -> build/lib.linux-armv7l-3.7/oncodrivefml 2020-09-11T16:55:05,557 copying oncodrivefml/config.py -> build/lib.linux-armv7l-3.7/oncodrivefml 2020-09-11T16:55:05,559 copying oncodrivefml/mtc.py -> build/lib.linux-armv7l-3.7/oncodrivefml 2020-09-11T16:55:05,561 copying oncodrivefml/scores.py -> build/lib.linux-armv7l-3.7/oncodrivefml 2020-09-11T16:55:05,563 copying oncodrivefml/walker.py -> build/lib.linux-armv7l-3.7/oncodrivefml 2020-09-11T16:55:05,564 copying oncodrivefml/load.py -> build/lib.linux-armv7l-3.7/oncodrivefml 2020-09-11T16:55:05,567 copying oncodrivefml/utils.py -> build/lib.linux-armv7l-3.7/oncodrivefml 2020-09-11T16:55:05,568 copying oncodrivefml/indels.py -> build/lib.linux-armv7l-3.7/oncodrivefml 2020-09-11T16:55:05,572 creating build/lib.linux-armv7l-3.7/oncodrivefml/executors 2020-09-11T16:55:05,573 copying oncodrivefml/executors/__init__.py -> build/lib.linux-armv7l-3.7/oncodrivefml/executors 2020-09-11T16:55:05,574 copying oncodrivefml/executors/element.py -> build/lib.linux-armv7l-3.7/oncodrivefml/executors 2020-09-11T16:55:05,577 copying oncodrivefml/executors/bysample.py -> build/lib.linux-armv7l-3.7/oncodrivefml/executors 2020-09-11T16:55:05,579 copying oncodrivefml/executors/bymutation.py -> build/lib.linux-armv7l-3.7/oncodrivefml/executors 2020-09-11T16:55:05,587 copying oncodrivefml/ensembl_genes_75.txt.gz -> build/lib.linux-armv7l-3.7/oncodrivefml 2020-09-11T16:55:05,611 copying oncodrivefml/oncodrivefml_v2.conf.template -> build/lib.linux-armv7l-3.7/oncodrivefml 2020-09-11T16:55:05,614 copying oncodrivefml/oncodrivefml_v2.conf.template.spec -> build/lib.linux-armv7l-3.7/oncodrivefml 2020-09-11T16:55:05,616 copying oncodrivefml/walker_cython.pyx -> build/lib.linux-armv7l-3.7/oncodrivefml 2020-09-11T16:55:05,620 running build_ext 2020-09-11T16:55:05,787 cythoning oncodrivefml/walker_cython.pyx to oncodrivefml/walker_cython.c 2020-09-11T16:55:06,415 /usr/local/lib/python3.7/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-mtkwba54/oncodrivefml/oncodrivefml/walker_cython.pyx 2020-09-11T16:55:06,415 tree = Parsing.p_module(s, pxd, full_module_name) 2020-09-11T16:55:08,889 building 'oncodrivefml.walker_cython' extension 2020-09-11T16:55:08,889 creating build/temp.linux-armv7l-3.7 2020-09-11T16:55:08,890 creating build/temp.linux-armv7l-3.7/oncodrivefml 2020-09-11T16:55:08,890 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c oncodrivefml/walker_cython.c -o build/temp.linux-armv7l-3.7/oncodrivefml/walker_cython.o 2020-09-11T16:55:19,717 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/oncodrivefml/walker_cython.o -o build/lib.linux-armv7l-3.7/oncodrivefml/walker_cython.cpython-37m-arm-linux-gnueabihf.so 2020-09-11T16:55:19,919 installing to build/bdist.linux-armv7l/wheel 2020-09-11T16:55:19,919 running install 2020-09-11T16:55:19,921 running install_lib 2020-09-11T16:55:19,926 creating build/bdist.linux-armv7l 2020-09-11T16:55:19,926 creating build/bdist.linux-armv7l/wheel 2020-09-11T16:55:19,929 creating build/bdist.linux-armv7l/wheel/oncodrivefml 2020-09-11T16:55:19,931 copying build/lib.linux-armv7l-3.7/oncodrivefml/__init__.py -> build/bdist.linux-armv7l/wheel/oncodrivefml 2020-09-11T16:55:19,935 copying build/lib.linux-armv7l-3.7/oncodrivefml/stats.py -> build/bdist.linux-armv7l/wheel/oncodrivefml 2020-09-11T16:55:19,939 creating build/bdist.linux-armv7l/wheel/oncodrivefml/executors 2020-09-11T16:55:19,940 copying build/lib.linux-armv7l-3.7/oncodrivefml/executors/__init__.py -> build/bdist.linux-armv7l/wheel/oncodrivefml/executors 2020-09-11T16:55:19,943 copying build/lib.linux-armv7l-3.7/oncodrivefml/executors/element.py -> build/bdist.linux-armv7l/wheel/oncodrivefml/executors 2020-09-11T16:55:19,947 copying build/lib.linux-armv7l-3.7/oncodrivefml/executors/bysample.py -> build/bdist.linux-armv7l/wheel/oncodrivefml/executors 2020-09-11T16:55:19,950 copying build/lib.linux-armv7l-3.7/oncodrivefml/executors/bymutation.py -> build/bdist.linux-armv7l/wheel/oncodrivefml/executors 2020-09-11T16:55:19,953 copying build/lib.linux-armv7l-3.7/oncodrivefml/main.py -> build/bdist.linux-armv7l/wheel/oncodrivefml 2020-09-11T16:55:19,956 copying build/lib.linux-armv7l-3.7/oncodrivefml/ensembl_genes_75.txt.gz -> build/bdist.linux-armv7l/wheel/oncodrivefml 2020-09-11T16:55:19,974 copying build/lib.linux-armv7l-3.7/oncodrivefml/walker_cython.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/oncodrivefml 2020-09-11T16:55:19,994 copying build/lib.linux-armv7l-3.7/oncodrivefml/signature.py -> build/bdist.linux-armv7l/wheel/oncodrivefml 2020-09-11T16:55:19,997 copying build/lib.linux-armv7l-3.7/oncodrivefml/compute.py -> build/bdist.linux-armv7l/wheel/oncodrivefml 2020-09-11T16:55:19,999 copying build/lib.linux-armv7l-3.7/oncodrivefml/store.py -> build/bdist.linux-armv7l/wheel/oncodrivefml 2020-09-11T16:55:20,003 copying build/lib.linux-armv7l-3.7/oncodrivefml/oncodrivefml_v2.conf.template.spec -> build/bdist.linux-armv7l/wheel/oncodrivefml 2020-09-11T16:55:20,005 copying build/lib.linux-armv7l-3.7/oncodrivefml/config.py -> build/bdist.linux-armv7l/wheel/oncodrivefml 2020-09-11T16:55:20,008 copying build/lib.linux-armv7l-3.7/oncodrivefml/walker_cython.pyx -> build/bdist.linux-armv7l/wheel/oncodrivefml 2020-09-11T16:55:20,010 copying build/lib.linux-armv7l-3.7/oncodrivefml/mtc.py -> build/bdist.linux-armv7l/wheel/oncodrivefml 2020-09-11T16:55:20,013 copying build/lib.linux-armv7l-3.7/oncodrivefml/scores.py -> build/bdist.linux-armv7l/wheel/oncodrivefml 2020-09-11T16:55:20,016 copying build/lib.linux-armv7l-3.7/oncodrivefml/walker.py -> build/bdist.linux-armv7l/wheel/oncodrivefml 2020-09-11T16:55:20,019 copying build/lib.linux-armv7l-3.7/oncodrivefml/load.py -> build/bdist.linux-armv7l/wheel/oncodrivefml 2020-09-11T16:55:20,024 copying build/lib.linux-armv7l-3.7/oncodrivefml/utils.py -> build/bdist.linux-armv7l/wheel/oncodrivefml 2020-09-11T16:55:20,027 copying build/lib.linux-armv7l-3.7/oncodrivefml/indels.py -> build/bdist.linux-armv7l/wheel/oncodrivefml 2020-09-11T16:55:20,030 copying build/lib.linux-armv7l-3.7/oncodrivefml/oncodrivefml_v2.conf.template -> build/bdist.linux-armv7l/wheel/oncodrivefml 2020-09-11T16:55:20,033 running install_egg_info 2020-09-11T16:55:20,060 running egg_info 2020-09-11T16:55:20,061 writing oncodrivefml.egg-info/PKG-INFO 2020-09-11T16:55:20,063 writing dependency_links to oncodrivefml.egg-info/dependency_links.txt 2020-09-11T16:55:20,065 writing entry points to oncodrivefml.egg-info/entry_points.txt 2020-09-11T16:55:20,066 writing requirements to oncodrivefml.egg-info/requires.txt 2020-09-11T16:55:20,068 writing top-level names to oncodrivefml.egg-info/top_level.txt 2020-09-11T16:55:20,076 reading manifest file 'oncodrivefml.egg-info/SOURCES.txt' 2020-09-11T16:55:20,079 reading manifest template 'MANIFEST.in' 2020-09-11T16:55:20,081 warning: no previously-included files matching '*.so' found anywhere in distribution 2020-09-11T16:55:20,084 writing manifest file 'oncodrivefml.egg-info/SOURCES.txt' 2020-09-11T16:55:20,086 Copying oncodrivefml.egg-info to build/bdist.linux-armv7l/wheel/oncodrivefml-2.0.1-py3.7.egg-info 2020-09-11T16:55:20,103 running install_scripts 2020-09-11T16:55:20,182 creating build/bdist.linux-armv7l/wheel/oncodrivefml-2.0.1.dist-info/WHEEL 2020-09-11T16:55:20,186 creating '/tmp/pip-wheel-2srqatel/oncodrivefml-2.0.1-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2020-09-11T16:55:20,190 adding 'oncodrivefml/__init__.py' 2020-09-11T16:55:20,192 adding 'oncodrivefml/compute.py' 2020-09-11T16:55:20,193 adding 'oncodrivefml/config.py' 2020-09-11T16:55:20,257 adding 'oncodrivefml/ensembl_genes_75.txt.gz' 2020-09-11T16:55:20,263 adding 'oncodrivefml/indels.py' 2020-09-11T16:55:20,265 adding 'oncodrivefml/load.py' 2020-09-11T16:55:20,267 adding 'oncodrivefml/main.py' 2020-09-11T16:55:20,269 adding 'oncodrivefml/mtc.py' 2020-09-11T16:55:20,270 adding 'oncodrivefml/oncodrivefml_v2.conf.template' 2020-09-11T16:55:20,271 adding 'oncodrivefml/oncodrivefml_v2.conf.template.spec' 2020-09-11T16:55:20,273 adding 'oncodrivefml/scores.py' 2020-09-11T16:55:20,276 adding 'oncodrivefml/signature.py' 2020-09-11T16:55:20,278 adding 'oncodrivefml/stats.py' 2020-09-11T16:55:20,280 adding 'oncodrivefml/store.py' 2020-09-11T16:55:20,282 adding 'oncodrivefml/utils.py' 2020-09-11T16:55:20,284 adding 'oncodrivefml/walker.py' 2020-09-11T16:55:20,433 adding 'oncodrivefml/walker_cython.cpython-37m-arm-linux-gnueabihf.so' 2020-09-11T16:55:20,439 adding 'oncodrivefml/walker_cython.pyx' 2020-09-11T16:55:20,441 adding 'oncodrivefml/executors/__init__.py' 2020-09-11T16:55:20,442 adding 'oncodrivefml/executors/bymutation.py' 2020-09-11T16:55:20,443 adding 'oncodrivefml/executors/bysample.py' 2020-09-11T16:55:20,445 adding 'oncodrivefml/executors/element.py' 2020-09-11T16:55:20,448 adding 'oncodrivefml-2.0.1.dist-info/METADATA' 2020-09-11T16:55:20,449 adding 'oncodrivefml-2.0.1.dist-info/WHEEL' 2020-09-11T16:55:20,450 adding 'oncodrivefml-2.0.1.dist-info/entry_points.txt' 2020-09-11T16:55:20,450 adding 'oncodrivefml-2.0.1.dist-info/top_level.txt' 2020-09-11T16:55:20,451 adding 'oncodrivefml-2.0.1.dist-info/RECORD' 2020-09-11T16:55:20,471 removing build/bdist.linux-armv7l/wheel 2020-09-11T16:55:20,811 Building wheel for oncodrivefml (setup.py): finished with status 'done' 2020-09-11T16:55:20,822 Created wheel for oncodrivefml: filename=oncodrivefml-2.0.1-cp37-cp37m-linux_armv7l.whl size=886453 sha256=347b1e3e51f51c629f2402b6fc99ddc5b91349277b7cbe268c9e216e08ee9764 2020-09-11T16:55:20,823 Stored in directory: /tmp/pip-ephem-wheel-cache-o8eytshe/wheels/13/2c/d3/b9a729425da649abef54731c953bcba011141f3af64aee3496 2020-09-11T16:55:20,825 Successfully built oncodrivefml 2020-09-11T16:55:20,865 Removed build tracker: '/tmp/pip-req-tracker-xvv0ypis'