2020-09-11T16:55:45,700 Created temporary directory: /tmp/pip-ephem-wheel-cache-8kb6yykc
2020-09-11T16:55:45,702 Created temporary directory: /tmp/pip-req-tracker-m25uijcq
2020-09-11T16:55:45,703 Initialized build tracking at /tmp/pip-req-tracker-m25uijcq
2020-09-11T16:55:45,703 Created build tracker: /tmp/pip-req-tracker-m25uijcq
2020-09-11T16:55:45,703 Entered build tracker: /tmp/pip-req-tracker-m25uijcq
2020-09-11T16:55:45,704 Created temporary directory: /tmp/pip-wheel-3bsai7xw
2020-09-11T16:55:45,712 1 location(s) to search for versions of oncodrivefml:
2020-09-11T16:55:45,712 * https://pypi.org/simple/oncodrivefml/
2020-09-11T16:55:45,712 Fetching project page and analyzing links: https://pypi.org/simple/oncodrivefml/
2020-09-11T16:55:45,712 Getting page https://pypi.org/simple/oncodrivefml/
2020-09-11T16:55:45,714 Found index url https://pypi.org/simple
2020-09-11T16:55:45,838   Found link https://files.pythonhosted.org/packages/db/67/1739dcef8c63626fda8b6a772cd8d82710adcf4e7a6dbb3185acb54af065/oncodrivefml-1.0.1.tar.gz#sha256=85568115bfa2ae7d1b77cd046fbcf97cd7fc26e3820611dff782ed96ef305161 (from https://pypi.org/simple/oncodrivefml/), version: 1.0.1
2020-09-11T16:55:45,839   Found link https://files.pythonhosted.org/packages/4c/5d/8770a0cf7425743d3b67ea91207dfc619f7a0826df1f82aac907388a9709/oncodrivefml-2.0.1.tar.gz#sha256=02cf92cea9d9bc0b7cdc8a2365a16d3d11b8dc829193bd31254831616064d5a9 (from https://pypi.org/simple/oncodrivefml/), version: 2.0.1
2020-09-11T16:55:45,839   Found link https://files.pythonhosted.org/packages/37/ec/1b093916cb9c9ba337fa9ae09a5d828e797f40e41050d1cbb59cf6eecdae/oncodrivefml-2.0.2.tar.gz#sha256=7b7ba10f48efeafe259627f2f1d0400189e23c3ef805c306679d014b6eac411f (from https://pypi.org/simple/oncodrivefml/), version: 2.0.2
2020-09-11T16:55:45,839   Found link https://files.pythonhosted.org/packages/ba/c9/edbcf5450123b824ca838b5c72d4a799fe87800a2f425eddd816f3460596/oncodrivefml-2.0.3.tar.gz#sha256=b2c1571bc9ae0d0cf17c725479a5197f2ea227a5fdc700d9576264d50e6f23f0 (from https://pypi.org/simple/oncodrivefml/), version: 2.0.3
2020-09-11T16:55:45,840   Found link https://files.pythonhosted.org/packages/ba/68/07a64ac621ccc248d4c8d2757cfb15c847ee2bc4e061a74b0e669698ba93/oncodrivefml-2.1.2.tar.gz#sha256=198b891604b2ff000fc973a779a89648957599ecdcccaefbacf9225f575c988a (from https://pypi.org/simple/oncodrivefml/), version: 2.1.2
2020-09-11T16:55:45,840   Found link https://files.pythonhosted.org/packages/68/6c/c86613b66f24ab8ff575c270865e9bf6fdd167bc52570c42a0114c72f65e/oncodrivefml-2.1.3.tar.gz#sha256=beba29277206e276b8d5face41e0b916c4b2089ef7a6bb707f0983b7eb2cf0a1 (from https://pypi.org/simple/oncodrivefml/), version: 2.1.3
2020-09-11T16:55:45,840   Found link https://files.pythonhosted.org/packages/27/6c/5b59d3c305a25b56ec31627ba1c5fbbebe98525ffd68a242b20d448e92b6/oncodrivefml-2.2.0.tar.gz#sha256=62c63c09424e4992c3d501b81a62fa496ae96ceae5f5358636f414d2eb55ac3f (from https://pypi.org/simple/oncodrivefml/), version: 2.2.0
2020-09-11T16:55:45,841   Found link https://files.pythonhosted.org/packages/05/ae/a3359962a4ff891c830429f227d49514374de04b06435fc4b9bd7f68620b/oncodrivefml-2.3.0.tar.gz#sha256=9ef35231696a9b01867d3b89a94b9d93d16b75357497dd17544a1670b44449f9 (from https://pypi.org/simple/oncodrivefml/), version: 2.3.0
2020-09-11T16:55:45,845 Given no hashes to check 1 links for project 'oncodrivefml': discarding no candidates
2020-09-11T16:55:45,846 Using version 2.0.2 (newest of versions: 2.0.2)
2020-09-11T16:55:45,850 Collecting oncodrivefml==2.0.2
2020-09-11T16:55:45,851   Created temporary directory: /tmp/pip-unpack-u8zdllox
2020-09-11T16:55:45,895   Downloading oncodrivefml-2.0.2.tar.gz (609 kB)
2020-09-11T16:55:46,074   Added oncodrivefml==2.0.2 from https://files.pythonhosted.org/packages/37/ec/1b093916cb9c9ba337fa9ae09a5d828e797f40e41050d1cbb59cf6eecdae/oncodrivefml-2.0.2.tar.gz#sha256=7b7ba10f48efeafe259627f2f1d0400189e23c3ef805c306679d014b6eac411f to build tracker '/tmp/pip-req-tracker-m25uijcq'
2020-09-11T16:55:46,076     Running setup.py (path:/tmp/pip-wheel-3bsai7xw/oncodrivefml/setup.py) egg_info for package oncodrivefml
2020-09-11T16:55:46,077     Created temporary directory: /tmp/pip-pip-egg-info-5wmjr906
2020-09-11T16:55:46,077     Running command python setup.py egg_info
2020-09-11T16:55:47,074     running egg_info
2020-09-11T16:55:47,076     creating /tmp/pip-pip-egg-info-5wmjr906/oncodrivefml.egg-info
2020-09-11T16:55:47,077     writing /tmp/pip-pip-egg-info-5wmjr906/oncodrivefml.egg-info/PKG-INFO
2020-09-11T16:55:47,079     writing dependency_links to /tmp/pip-pip-egg-info-5wmjr906/oncodrivefml.egg-info/dependency_links.txt
2020-09-11T16:55:47,081     writing entry points to /tmp/pip-pip-egg-info-5wmjr906/oncodrivefml.egg-info/entry_points.txt
2020-09-11T16:55:47,082     writing requirements to /tmp/pip-pip-egg-info-5wmjr906/oncodrivefml.egg-info/requires.txt
2020-09-11T16:55:47,083     writing top-level names to /tmp/pip-pip-egg-info-5wmjr906/oncodrivefml.egg-info/top_level.txt
2020-09-11T16:55:47,085     writing manifest file '/tmp/pip-pip-egg-info-5wmjr906/oncodrivefml.egg-info/SOURCES.txt'
2020-09-11T16:55:47,388     reading manifest file '/tmp/pip-pip-egg-info-5wmjr906/oncodrivefml.egg-info/SOURCES.txt'
2020-09-11T16:55:47,390     reading manifest template 'MANIFEST.in'
2020-09-11T16:55:47,391     warning: no previously-included files matching '*.c' found anywhere in distribution
2020-09-11T16:55:47,392     warning: no previously-included files matching '*.so' found anywhere in distribution
2020-09-11T16:55:47,394     writing manifest file '/tmp/pip-pip-egg-info-5wmjr906/oncodrivefml.egg-info/SOURCES.txt'
2020-09-11T16:55:47,463   Source in /tmp/pip-wheel-3bsai7xw/oncodrivefml has version 2.0.2, which satisfies requirement oncodrivefml==2.0.2 from https://files.pythonhosted.org/packages/37/ec/1b093916cb9c9ba337fa9ae09a5d828e797f40e41050d1cbb59cf6eecdae/oncodrivefml-2.0.2.tar.gz#sha256=7b7ba10f48efeafe259627f2f1d0400189e23c3ef805c306679d014b6eac411f
2020-09-11T16:55:47,464   Removed oncodrivefml==2.0.2 from https://files.pythonhosted.org/packages/37/ec/1b093916cb9c9ba337fa9ae09a5d828e797f40e41050d1cbb59cf6eecdae/oncodrivefml-2.0.2.tar.gz#sha256=7b7ba10f48efeafe259627f2f1d0400189e23c3ef805c306679d014b6eac411f from build tracker '/tmp/pip-req-tracker-m25uijcq'
2020-09-11T16:55:47,466 Building wheels for collected packages: oncodrivefml
2020-09-11T16:55:47,470   Created temporary directory: /tmp/pip-wheel-rzm7yzgl
2020-09-11T16:55:47,471   Building wheel for oncodrivefml (setup.py): started
2020-09-11T16:55:47,472   Destination directory: /tmp/pip-wheel-rzm7yzgl
2020-09-11T16:55:47,472   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-3bsai7xw/oncodrivefml/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-3bsai7xw/oncodrivefml/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-rzm7yzgl
2020-09-11T16:55:48,549   running bdist_wheel
2020-09-11T16:55:48,555   running build
2020-09-11T16:55:48,555   running build_py
2020-09-11T16:55:48,687   creating build
2020-09-11T16:55:48,687   creating build/lib.linux-armv7l-3.7
2020-09-11T16:55:48,688   creating build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T16:55:48,689   copying oncodrivefml/__init__.py -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T16:55:48,691   copying oncodrivefml/stats.py -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T16:55:48,693   copying oncodrivefml/main.py -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T16:55:48,695   copying oncodrivefml/signature.py -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T16:55:48,698   copying oncodrivefml/compute.py -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T16:55:48,700   copying oncodrivefml/store.py -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T16:55:48,703   copying oncodrivefml/config.py -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T16:55:48,705   copying oncodrivefml/mtc.py -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T16:55:48,707   copying oncodrivefml/scores.py -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T16:55:48,710   copying oncodrivefml/walker.py -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T16:55:48,712   copying oncodrivefml/load.py -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T16:55:48,715   copying oncodrivefml/utils.py -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T16:55:48,717   copying oncodrivefml/indels.py -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T16:55:48,720   creating build/lib.linux-armv7l-3.7/oncodrivefml/executors
2020-09-11T16:55:48,721   copying oncodrivefml/executors/__init__.py -> build/lib.linux-armv7l-3.7/oncodrivefml/executors
2020-09-11T16:55:48,723   copying oncodrivefml/executors/element.py -> build/lib.linux-armv7l-3.7/oncodrivefml/executors
2020-09-11T16:55:48,726   copying oncodrivefml/executors/bysample.py -> build/lib.linux-armv7l-3.7/oncodrivefml/executors
2020-09-11T16:55:48,728   copying oncodrivefml/executors/bymutation.py -> build/lib.linux-armv7l-3.7/oncodrivefml/executors
2020-09-11T16:55:48,735   copying oncodrivefml/ensembl_genes_75.txt.gz -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T16:55:48,756   copying oncodrivefml/oncodrivefml_v2.conf.template -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T16:55:48,759   copying oncodrivefml/oncodrivefml_v2.conf.template.spec -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T16:55:48,761   copying oncodrivefml/walker_cython.pyx -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T16:55:48,765   running build_ext
2020-09-11T16:55:48,933   cythoning oncodrivefml/walker_cython.pyx to oncodrivefml/walker_cython.c
2020-09-11T16:55:49,532   /usr/local/lib/python3.7/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-3bsai7xw/oncodrivefml/oncodrivefml/walker_cython.pyx
2020-09-11T16:55:49,532     tree = Parsing.p_module(s, pxd, full_module_name)
2020-09-11T16:55:52,017   building 'oncodrivefml.walker_cython' extension
2020-09-11T16:55:52,017   creating build/temp.linux-armv7l-3.7
2020-09-11T16:55:52,018   creating build/temp.linux-armv7l-3.7/oncodrivefml
2020-09-11T16:55:52,018   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c oncodrivefml/walker_cython.c -o build/temp.linux-armv7l-3.7/oncodrivefml/walker_cython.o
2020-09-11T16:56:02,780   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/oncodrivefml/walker_cython.o -o build/lib.linux-armv7l-3.7/oncodrivefml/walker_cython.cpython-37m-arm-linux-gnueabihf.so
2020-09-11T16:56:02,959   installing to build/bdist.linux-armv7l/wheel
2020-09-11T16:56:02,959   running install
2020-09-11T16:56:02,960   running install_lib
2020-09-11T16:56:02,966   creating build/bdist.linux-armv7l
2020-09-11T16:56:02,967   creating build/bdist.linux-armv7l/wheel
2020-09-11T16:56:02,969   creating build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:56:02,970   copying build/lib.linux-armv7l-3.7/oncodrivefml/__init__.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:56:02,972   copying build/lib.linux-armv7l-3.7/oncodrivefml/stats.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:56:02,975   creating build/bdist.linux-armv7l/wheel/oncodrivefml/executors
2020-09-11T16:56:02,976   copying build/lib.linux-armv7l-3.7/oncodrivefml/executors/__init__.py -> build/bdist.linux-armv7l/wheel/oncodrivefml/executors
2020-09-11T16:56:02,979   copying build/lib.linux-armv7l-3.7/oncodrivefml/executors/element.py -> build/bdist.linux-armv7l/wheel/oncodrivefml/executors
2020-09-11T16:56:02,981   copying build/lib.linux-armv7l-3.7/oncodrivefml/executors/bysample.py -> build/bdist.linux-armv7l/wheel/oncodrivefml/executors
2020-09-11T16:56:02,984   copying build/lib.linux-armv7l-3.7/oncodrivefml/executors/bymutation.py -> build/bdist.linux-armv7l/wheel/oncodrivefml/executors
2020-09-11T16:56:02,986   copying build/lib.linux-armv7l-3.7/oncodrivefml/main.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:56:02,989   copying build/lib.linux-armv7l-3.7/oncodrivefml/ensembl_genes_75.txt.gz -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:56:03,007   copying build/lib.linux-armv7l-3.7/oncodrivefml/walker_cython.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:56:03,024   copying build/lib.linux-armv7l-3.7/oncodrivefml/signature.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:56:03,026   copying build/lib.linux-armv7l-3.7/oncodrivefml/compute.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:56:03,028   copying build/lib.linux-armv7l-3.7/oncodrivefml/store.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:56:03,031   copying build/lib.linux-armv7l-3.7/oncodrivefml/oncodrivefml_v2.conf.template.spec -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:56:03,033   copying build/lib.linux-armv7l-3.7/oncodrivefml/config.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:56:03,035   copying build/lib.linux-armv7l-3.7/oncodrivefml/walker_cython.pyx -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:56:03,037   copying build/lib.linux-armv7l-3.7/oncodrivefml/mtc.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:56:03,039   copying build/lib.linux-armv7l-3.7/oncodrivefml/scores.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:56:03,042   copying build/lib.linux-armv7l-3.7/oncodrivefml/walker.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:56:03,045   copying build/lib.linux-armv7l-3.7/oncodrivefml/load.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:56:03,047   copying build/lib.linux-armv7l-3.7/oncodrivefml/utils.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:56:03,050   copying build/lib.linux-armv7l-3.7/oncodrivefml/indels.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:56:03,052   copying build/lib.linux-armv7l-3.7/oncodrivefml/oncodrivefml_v2.conf.template -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T16:56:03,054   running install_egg_info
2020-09-11T16:56:03,081   running egg_info
2020-09-11T16:56:03,082   writing oncodrivefml.egg-info/PKG-INFO
2020-09-11T16:56:03,084   writing dependency_links to oncodrivefml.egg-info/dependency_links.txt
2020-09-11T16:56:03,086   writing entry points to oncodrivefml.egg-info/entry_points.txt
2020-09-11T16:56:03,087   writing requirements to oncodrivefml.egg-info/requires.txt
2020-09-11T16:56:03,088   writing top-level names to oncodrivefml.egg-info/top_level.txt
2020-09-11T16:56:03,095   reading manifest file 'oncodrivefml.egg-info/SOURCES.txt'
2020-09-11T16:56:03,098   reading manifest template 'MANIFEST.in'
2020-09-11T16:56:03,100   warning: no previously-included files matching '*.so' found anywhere in distribution
2020-09-11T16:56:03,103   writing manifest file 'oncodrivefml.egg-info/SOURCES.txt'
2020-09-11T16:56:03,105   Copying oncodrivefml.egg-info to build/bdist.linux-armv7l/wheel/oncodrivefml-2.0.2-py3.7.egg-info
2020-09-11T16:56:03,118   running install_scripts
2020-09-11T16:56:03,308   creating build/bdist.linux-armv7l/wheel/oncodrivefml-2.0.2.dist-info/WHEEL
2020-09-11T16:56:03,310   creating '/tmp/pip-wheel-rzm7yzgl/oncodrivefml-2.0.2-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-09-11T16:56:03,313   adding 'oncodrivefml/__init__.py'
2020-09-11T16:56:03,314   adding 'oncodrivefml/compute.py'
2020-09-11T16:56:03,315   adding 'oncodrivefml/config.py'
2020-09-11T16:56:03,378   adding 'oncodrivefml/ensembl_genes_75.txt.gz'
2020-09-11T16:56:03,383   adding 'oncodrivefml/indels.py'
2020-09-11T16:56:03,385   adding 'oncodrivefml/load.py'
2020-09-11T16:56:03,388   adding 'oncodrivefml/main.py'
2020-09-11T16:56:03,389   adding 'oncodrivefml/mtc.py'
2020-09-11T16:56:03,391   adding 'oncodrivefml/oncodrivefml_v2.conf.template'
2020-09-11T16:56:03,392   adding 'oncodrivefml/oncodrivefml_v2.conf.template.spec'
2020-09-11T16:56:03,394   adding 'oncodrivefml/scores.py'
2020-09-11T16:56:03,396   adding 'oncodrivefml/signature.py'
2020-09-11T16:56:03,398   adding 'oncodrivefml/stats.py'
2020-09-11T16:56:03,400   adding 'oncodrivefml/store.py'
2020-09-11T16:56:03,402   adding 'oncodrivefml/utils.py'
2020-09-11T16:56:03,403   adding 'oncodrivefml/walker.py'
2020-09-11T16:56:03,552   adding 'oncodrivefml/walker_cython.cpython-37m-arm-linux-gnueabihf.so'
2020-09-11T16:56:03,557   adding 'oncodrivefml/walker_cython.pyx'
2020-09-11T16:56:03,559   adding 'oncodrivefml/executors/__init__.py'
2020-09-11T16:56:03,560   adding 'oncodrivefml/executors/bymutation.py'
2020-09-11T16:56:03,561   adding 'oncodrivefml/executors/bysample.py'
2020-09-11T16:56:03,563   adding 'oncodrivefml/executors/element.py'
2020-09-11T16:56:03,565   adding 'oncodrivefml-2.0.2.dist-info/METADATA'
2020-09-11T16:56:03,566   adding 'oncodrivefml-2.0.2.dist-info/WHEEL'
2020-09-11T16:56:03,567   adding 'oncodrivefml-2.0.2.dist-info/entry_points.txt'
2020-09-11T16:56:03,568   adding 'oncodrivefml-2.0.2.dist-info/top_level.txt'
2020-09-11T16:56:03,569   adding 'oncodrivefml-2.0.2.dist-info/RECORD'
2020-09-11T16:56:03,583   removing build/bdist.linux-armv7l/wheel
2020-09-11T16:56:03,915   Building wheel for oncodrivefml (setup.py): finished with status 'done'
2020-09-11T16:56:03,926   Created wheel for oncodrivefml: filename=oncodrivefml-2.0.2-cp37-cp37m-linux_armv7l.whl size=886476 sha256=f047f5953c0515a3038538e24f3891570455a434992509bfae2766b2af3d7ad5
2020-09-11T16:56:03,926   Stored in directory: /tmp/pip-ephem-wheel-cache-8kb6yykc/wheels/1f/76/d5/43ac039b5b739a9bc69644369958b299d74badb07fc0f46782
2020-09-11T16:56:03,929 Successfully built oncodrivefml
2020-09-11T16:56:03,959 Removed build tracker: '/tmp/pip-req-tracker-m25uijcq'