2020-09-11T17:32:01,499 Created temporary directory: /tmp/pip-ephem-wheel-cache-_pfrsy63
2020-09-11T17:32:01,505 Created temporary directory: /tmp/pip-req-tracker-5vgfu_f5
2020-09-11T17:32:01,506 Initialized build tracking at /tmp/pip-req-tracker-5vgfu_f5
2020-09-11T17:32:01,506 Created build tracker: /tmp/pip-req-tracker-5vgfu_f5
2020-09-11T17:32:01,507 Entered build tracker: /tmp/pip-req-tracker-5vgfu_f5
2020-09-11T17:32:01,508 Created temporary directory: /tmp/pip-wheel-w270d0v7
2020-09-11T17:32:01,525 1 location(s) to search for versions of oncodrivefml:
2020-09-11T17:32:01,525 * https://pypi.org/simple/oncodrivefml/
2020-09-11T17:32:01,526 Fetching project page and analyzing links: https://pypi.org/simple/oncodrivefml/
2020-09-11T17:32:01,528 Getting page https://pypi.org/simple/oncodrivefml/
2020-09-11T17:32:01,533 Found index url https://pypi.org/simple
2020-09-11T17:32:01,791   Found link https://files.pythonhosted.org/packages/db/67/1739dcef8c63626fda8b6a772cd8d82710adcf4e7a6dbb3185acb54af065/oncodrivefml-1.0.1.tar.gz#sha256=85568115bfa2ae7d1b77cd046fbcf97cd7fc26e3820611dff782ed96ef305161 (from https://pypi.org/simple/oncodrivefml/), version: 1.0.1
2020-09-11T17:32:01,793   Found link https://files.pythonhosted.org/packages/4c/5d/8770a0cf7425743d3b67ea91207dfc619f7a0826df1f82aac907388a9709/oncodrivefml-2.0.1.tar.gz#sha256=02cf92cea9d9bc0b7cdc8a2365a16d3d11b8dc829193bd31254831616064d5a9 (from https://pypi.org/simple/oncodrivefml/), version: 2.0.1
2020-09-11T17:32:01,794   Found link https://files.pythonhosted.org/packages/37/ec/1b093916cb9c9ba337fa9ae09a5d828e797f40e41050d1cbb59cf6eecdae/oncodrivefml-2.0.2.tar.gz#sha256=7b7ba10f48efeafe259627f2f1d0400189e23c3ef805c306679d014b6eac411f (from https://pypi.org/simple/oncodrivefml/), version: 2.0.2
2020-09-11T17:32:01,795   Found link https://files.pythonhosted.org/packages/ba/c9/edbcf5450123b824ca838b5c72d4a799fe87800a2f425eddd816f3460596/oncodrivefml-2.0.3.tar.gz#sha256=b2c1571bc9ae0d0cf17c725479a5197f2ea227a5fdc700d9576264d50e6f23f0 (from https://pypi.org/simple/oncodrivefml/), version: 2.0.3
2020-09-11T17:32:01,797   Found link https://files.pythonhosted.org/packages/ba/68/07a64ac621ccc248d4c8d2757cfb15c847ee2bc4e061a74b0e669698ba93/oncodrivefml-2.1.2.tar.gz#sha256=198b891604b2ff000fc973a779a89648957599ecdcccaefbacf9225f575c988a (from https://pypi.org/simple/oncodrivefml/), version: 2.1.2
2020-09-11T17:32:01,798   Found link https://files.pythonhosted.org/packages/68/6c/c86613b66f24ab8ff575c270865e9bf6fdd167bc52570c42a0114c72f65e/oncodrivefml-2.1.3.tar.gz#sha256=beba29277206e276b8d5face41e0b916c4b2089ef7a6bb707f0983b7eb2cf0a1 (from https://pypi.org/simple/oncodrivefml/), version: 2.1.3
2020-09-11T17:32:01,800   Found link https://files.pythonhosted.org/packages/27/6c/5b59d3c305a25b56ec31627ba1c5fbbebe98525ffd68a242b20d448e92b6/oncodrivefml-2.2.0.tar.gz#sha256=62c63c09424e4992c3d501b81a62fa496ae96ceae5f5358636f414d2eb55ac3f (from https://pypi.org/simple/oncodrivefml/), version: 2.2.0
2020-09-11T17:32:01,801   Found link https://files.pythonhosted.org/packages/05/ae/a3359962a4ff891c830429f227d49514374de04b06435fc4b9bd7f68620b/oncodrivefml-2.3.0.tar.gz#sha256=9ef35231696a9b01867d3b89a94b9d93d16b75357497dd17544a1670b44449f9 (from https://pypi.org/simple/oncodrivefml/), version: 2.3.0
2020-09-11T17:32:01,815 Given no hashes to check 1 links for project 'oncodrivefml': discarding no candidates
2020-09-11T17:32:01,817 Using version 2.0.3 (newest of versions: 2.0.3)
2020-09-11T17:32:01,827 Collecting oncodrivefml==2.0.3
2020-09-11T17:32:01,833   Created temporary directory: /tmp/pip-unpack-0wag89aj
2020-09-11T17:32:02,088   Downloading oncodrivefml-2.0.3.tar.gz (609 kB)
2020-09-11T17:32:02,540   Added oncodrivefml==2.0.3 from https://files.pythonhosted.org/packages/ba/c9/edbcf5450123b824ca838b5c72d4a799fe87800a2f425eddd816f3460596/oncodrivefml-2.0.3.tar.gz#sha256=b2c1571bc9ae0d0cf17c725479a5197f2ea227a5fdc700d9576264d50e6f23f0 to build tracker '/tmp/pip-req-tracker-5vgfu_f5'
2020-09-11T17:32:02,543     Running setup.py (path:/tmp/pip-wheel-w270d0v7/oncodrivefml/setup.py) egg_info for package oncodrivefml
2020-09-11T17:32:02,545     Created temporary directory: /tmp/pip-pip-egg-info-r19byg7k
2020-09-11T17:32:02,546     Running command python setup.py egg_info
2020-09-11T17:32:04,829     running egg_info
2020-09-11T17:32:04,834     creating /tmp/pip-pip-egg-info-r19byg7k/oncodrivefml.egg-info
2020-09-11T17:32:04,836     writing entry points to /tmp/pip-pip-egg-info-r19byg7k/oncodrivefml.egg-info/entry_points.txt
2020-09-11T17:32:04,839     writing /tmp/pip-pip-egg-info-r19byg7k/oncodrivefml.egg-info/PKG-INFO
2020-09-11T17:32:04,844     writing dependency_links to /tmp/pip-pip-egg-info-r19byg7k/oncodrivefml.egg-info/dependency_links.txt
2020-09-11T17:32:04,846     writing top-level names to /tmp/pip-pip-egg-info-r19byg7k/oncodrivefml.egg-info/top_level.txt
2020-09-11T17:32:04,848     writing requirements to /tmp/pip-pip-egg-info-r19byg7k/oncodrivefml.egg-info/requires.txt
2020-09-11T17:32:04,854     writing manifest file '/tmp/pip-pip-egg-info-r19byg7k/oncodrivefml.egg-info/SOURCES.txt'
2020-09-11T17:32:05,384     reading manifest file '/tmp/pip-pip-egg-info-r19byg7k/oncodrivefml.egg-info/SOURCES.txt'
2020-09-11T17:32:05,387     reading manifest template 'MANIFEST.in'
2020-09-11T17:32:05,391     warning: no previously-included files matching '*.c' found anywhere in distribution
2020-09-11T17:32:05,392     warning: no previously-included files matching '*.so' found anywhere in distribution
2020-09-11T17:32:05,399     writing manifest file '/tmp/pip-pip-egg-info-r19byg7k/oncodrivefml.egg-info/SOURCES.txt'
2020-09-11T17:32:05,558   Source in /tmp/pip-wheel-w270d0v7/oncodrivefml has version 2.0.3, which satisfies requirement oncodrivefml==2.0.3 from https://files.pythonhosted.org/packages/ba/c9/edbcf5450123b824ca838b5c72d4a799fe87800a2f425eddd816f3460596/oncodrivefml-2.0.3.tar.gz#sha256=b2c1571bc9ae0d0cf17c725479a5197f2ea227a5fdc700d9576264d50e6f23f0
2020-09-11T17:32:05,560   Removed oncodrivefml==2.0.3 from https://files.pythonhosted.org/packages/ba/c9/edbcf5450123b824ca838b5c72d4a799fe87800a2f425eddd816f3460596/oncodrivefml-2.0.3.tar.gz#sha256=b2c1571bc9ae0d0cf17c725479a5197f2ea227a5fdc700d9576264d50e6f23f0 from build tracker '/tmp/pip-req-tracker-5vgfu_f5'
2020-09-11T17:32:05,563 Building wheels for collected packages: oncodrivefml
2020-09-11T17:32:05,574   Created temporary directory: /tmp/pip-wheel-e2134bhg
2020-09-11T17:32:05,575   Building wheel for oncodrivefml (setup.py): started
2020-09-11T17:32:05,577   Destination directory: /tmp/pip-wheel-e2134bhg
2020-09-11T17:32:05,578   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-w270d0v7/oncodrivefml/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-w270d0v7/oncodrivefml/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-e2134bhg
2020-09-11T17:32:07,889   running bdist_wheel
2020-09-11T17:32:07,905   running build
2020-09-11T17:32:07,906   running build_py
2020-09-11T17:32:08,249   creating build
2020-09-11T17:32:08,250   creating build/lib.linux-armv7l-3.5
2020-09-11T17:32:08,252   creating build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T17:32:08,255   copying oncodrivefml/scores.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T17:32:08,261   copying oncodrivefml/stats.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T17:32:08,267   copying oncodrivefml/utils.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T17:32:08,272   copying oncodrivefml/walker.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T17:32:08,277   copying oncodrivefml/config.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T17:32:08,281   copying oncodrivefml/__init__.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T17:32:08,286   copying oncodrivefml/signature.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T17:32:08,294   copying oncodrivefml/compute.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T17:32:08,299   copying oncodrivefml/main.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T17:32:08,307   copying oncodrivefml/store.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T17:32:08,316   copying oncodrivefml/load.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T17:32:08,323   copying oncodrivefml/mtc.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T17:32:08,329   copying oncodrivefml/indels.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T17:32:08,338   creating build/lib.linux-armv7l-3.5/oncodrivefml/executors
2020-09-11T17:32:08,341   copying oncodrivefml/executors/bymutation.py -> build/lib.linux-armv7l-3.5/oncodrivefml/executors
2020-09-11T17:32:08,347   copying oncodrivefml/executors/element.py -> build/lib.linux-armv7l-3.5/oncodrivefml/executors
2020-09-11T17:32:08,354   copying oncodrivefml/executors/__init__.py -> build/lib.linux-armv7l-3.5/oncodrivefml/executors
2020-09-11T17:32:08,359   copying oncodrivefml/executors/bysample.py -> build/lib.linux-armv7l-3.5/oncodrivefml/executors
2020-09-11T17:32:08,381   copying oncodrivefml/ensembl_genes_75.txt.gz -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T17:32:08,443   copying oncodrivefml/oncodrivefml_v2.conf.template -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T17:32:08,450   copying oncodrivefml/oncodrivefml_v2.conf.template.spec -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T17:32:08,457   copying oncodrivefml/walker_cython.pyx -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-11T17:32:08,469   running build_ext
2020-09-11T17:32:08,623   cythoning oncodrivefml/walker_cython.pyx to oncodrivefml/walker_cython.c
2020-09-11T17:32:15,309   building 'oncodrivefml.walker_cython' extension
2020-09-11T17:32:15,311   creating build/temp.linux-armv7l-3.5
2020-09-11T17:32:15,313   creating build/temp.linux-armv7l-3.5/oncodrivefml
2020-09-11T17:32:15,316   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c oncodrivefml/walker_cython.c -o build/temp.linux-armv7l-3.5/oncodrivefml/walker_cython.o
2020-09-11T17:32:32,052   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/oncodrivefml/walker_cython.o -o build/lib.linux-armv7l-3.5/oncodrivefml/walker_cython.cpython-35m-arm-linux-gnueabihf.so
2020-09-11T17:32:32,321   installing to build/bdist.linux-armv7l/wheel
2020-09-11T17:32:32,322   running install
2020-09-11T17:32:32,326   running install_lib
2020-09-11T17:32:32,336   creating build/bdist.linux-armv7l
2020-09-11T17:32:32,338   creating build/bdist.linux-armv7l/wheel
2020-09-11T17:32:32,344   creating build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:32:32,348   copying build/lib.linux-armv7l-3.5/oncodrivefml/scores.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:32:32,356   copying build/lib.linux-armv7l-3.5/oncodrivefml/oncodrivefml_v2.conf.template -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:32:32,363   copying build/lib.linux-armv7l-3.5/oncodrivefml/stats.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:32:32,369   copying build/lib.linux-armv7l-3.5/oncodrivefml/walker_cython.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:32:32,418   copying build/lib.linux-armv7l-3.5/oncodrivefml/utils.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:32:32,424   copying build/lib.linux-armv7l-3.5/oncodrivefml/walker.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:32:32,430   copying build/lib.linux-armv7l-3.5/oncodrivefml/config.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:32:32,436   copying build/lib.linux-armv7l-3.5/oncodrivefml/__init__.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:32:32,442   copying build/lib.linux-armv7l-3.5/oncodrivefml/signature.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:32:32,450   copying build/lib.linux-armv7l-3.5/oncodrivefml/compute.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:32:32,456   copying build/lib.linux-armv7l-3.5/oncodrivefml/walker_cython.pyx -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:32:32,462   copying build/lib.linux-armv7l-3.5/oncodrivefml/main.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:32:32,470   copying build/lib.linux-armv7l-3.5/oncodrivefml/store.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:32:32,480   creating build/bdist.linux-armv7l/wheel/oncodrivefml/executors
2020-09-11T17:32:32,483   copying build/lib.linux-armv7l-3.5/oncodrivefml/executors/bymutation.py -> build/bdist.linux-armv7l/wheel/oncodrivefml/executors
2020-09-11T17:32:32,490   copying build/lib.linux-armv7l-3.5/oncodrivefml/executors/element.py -> build/bdist.linux-armv7l/wheel/oncodrivefml/executors
2020-09-11T17:32:32,498   copying build/lib.linux-armv7l-3.5/oncodrivefml/executors/__init__.py -> build/bdist.linux-armv7l/wheel/oncodrivefml/executors
2020-09-11T17:32:32,503   copying build/lib.linux-armv7l-3.5/oncodrivefml/executors/bysample.py -> build/bdist.linux-armv7l/wheel/oncodrivefml/executors
2020-09-11T17:32:32,509   copying build/lib.linux-armv7l-3.5/oncodrivefml/oncodrivefml_v2.conf.template.spec -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:32:32,515   copying build/lib.linux-armv7l-3.5/oncodrivefml/load.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:32:32,521   copying build/lib.linux-armv7l-3.5/oncodrivefml/mtc.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:32:32,526   copying build/lib.linux-armv7l-3.5/oncodrivefml/ensembl_genes_75.txt.gz -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:32:32,583   copying build/lib.linux-armv7l-3.5/oncodrivefml/indels.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:32:32,589   running install_egg_info
2020-09-11T17:32:32,637   running egg_info
2020-09-11T17:32:32,639   writing top-level names to oncodrivefml.egg-info/top_level.txt
2020-09-11T17:32:32,642   writing oncodrivefml.egg-info/PKG-INFO
2020-09-11T17:32:32,647   writing requirements to oncodrivefml.egg-info/requires.txt
2020-09-11T17:32:32,650   writing dependency_links to oncodrivefml.egg-info/dependency_links.txt
2020-09-11T17:32:32,653   writing entry points to oncodrivefml.egg-info/entry_points.txt
2020-09-11T17:32:32,669   reading manifest file 'oncodrivefml.egg-info/SOURCES.txt'
2020-09-11T17:32:32,675   reading manifest template 'MANIFEST.in'
2020-09-11T17:32:32,679   warning: no previously-included files matching '*.so' found anywhere in distribution
2020-09-11T17:32:32,687   writing manifest file 'oncodrivefml.egg-info/SOURCES.txt'
2020-09-11T17:32:32,690   Copying oncodrivefml.egg-info to build/bdist.linux-armv7l/wheel/oncodrivefml-2.0.3-py3.5.egg-info
2020-09-11T17:32:32,722   running install_scripts
2020-09-11T17:32:32,915   creating build/bdist.linux-armv7l/wheel/oncodrivefml-2.0.3.dist-info/WHEEL
2020-09-11T17:32:34,181   Building wheel for oncodrivefml (setup.py): finished with status 'done'
2020-09-11T17:32:34,199   Created wheel for oncodrivefml: filename=oncodrivefml-2.0.3-cp35-cp35m-linux_armv7l.whl size=800427 sha256=fd01ee34a0498f14a8fab6d8d3469cfddcf02576ff65e5159ede8f8ddf459827
2020-09-11T17:32:34,199   Stored in directory: /tmp/pip-ephem-wheel-cache-_pfrsy63/wheels/43/c8/d7/ef2eeffc9ef41e44ab0cf421d9f11e5b5542d9d0ce49edd8cd
2020-09-11T17:32:34,203 Successfully built oncodrivefml
2020-09-11T17:32:34,350 Removed build tracker: '/tmp/pip-req-tracker-5vgfu_f5'