2020-09-11T17:35:00,657 Created temporary directory: /tmp/pip-ephem-wheel-cache-wpfitny4
2020-09-11T17:35:00,659 Created temporary directory: /tmp/pip-req-tracker-8y2l8jpk
2020-09-11T17:35:00,660 Initialized build tracking at /tmp/pip-req-tracker-8y2l8jpk
2020-09-11T17:35:00,660 Created build tracker: /tmp/pip-req-tracker-8y2l8jpk
2020-09-11T17:35:00,660 Entered build tracker: /tmp/pip-req-tracker-8y2l8jpk
2020-09-11T17:35:00,661 Created temporary directory: /tmp/pip-wheel-kcc_btrc
2020-09-11T17:35:00,669 1 location(s) to search for versions of oncodrivefml:
2020-09-11T17:35:00,669 * https://pypi.org/simple/oncodrivefml/
2020-09-11T17:35:00,670 Fetching project page and analyzing links: https://pypi.org/simple/oncodrivefml/
2020-09-11T17:35:00,670 Getting page https://pypi.org/simple/oncodrivefml/
2020-09-11T17:35:00,672 Found index url https://pypi.org/simple
2020-09-11T17:35:00,762   Found link https://files.pythonhosted.org/packages/db/67/1739dcef8c63626fda8b6a772cd8d82710adcf4e7a6dbb3185acb54af065/oncodrivefml-1.0.1.tar.gz#sha256=85568115bfa2ae7d1b77cd046fbcf97cd7fc26e3820611dff782ed96ef305161 (from https://pypi.org/simple/oncodrivefml/), version: 1.0.1
2020-09-11T17:35:00,762   Found link https://files.pythonhosted.org/packages/4c/5d/8770a0cf7425743d3b67ea91207dfc619f7a0826df1f82aac907388a9709/oncodrivefml-2.0.1.tar.gz#sha256=02cf92cea9d9bc0b7cdc8a2365a16d3d11b8dc829193bd31254831616064d5a9 (from https://pypi.org/simple/oncodrivefml/), version: 2.0.1
2020-09-11T17:35:00,763   Found link https://files.pythonhosted.org/packages/37/ec/1b093916cb9c9ba337fa9ae09a5d828e797f40e41050d1cbb59cf6eecdae/oncodrivefml-2.0.2.tar.gz#sha256=7b7ba10f48efeafe259627f2f1d0400189e23c3ef805c306679d014b6eac411f (from https://pypi.org/simple/oncodrivefml/), version: 2.0.2
2020-09-11T17:35:00,763   Found link https://files.pythonhosted.org/packages/ba/c9/edbcf5450123b824ca838b5c72d4a799fe87800a2f425eddd816f3460596/oncodrivefml-2.0.3.tar.gz#sha256=b2c1571bc9ae0d0cf17c725479a5197f2ea227a5fdc700d9576264d50e6f23f0 (from https://pypi.org/simple/oncodrivefml/), version: 2.0.3
2020-09-11T17:35:00,763   Found link https://files.pythonhosted.org/packages/ba/68/07a64ac621ccc248d4c8d2757cfb15c847ee2bc4e061a74b0e669698ba93/oncodrivefml-2.1.2.tar.gz#sha256=198b891604b2ff000fc973a779a89648957599ecdcccaefbacf9225f575c988a (from https://pypi.org/simple/oncodrivefml/), version: 2.1.2
2020-09-11T17:35:00,764   Found link https://files.pythonhosted.org/packages/68/6c/c86613b66f24ab8ff575c270865e9bf6fdd167bc52570c42a0114c72f65e/oncodrivefml-2.1.3.tar.gz#sha256=beba29277206e276b8d5face41e0b916c4b2089ef7a6bb707f0983b7eb2cf0a1 (from https://pypi.org/simple/oncodrivefml/), version: 2.1.3
2020-09-11T17:35:00,764   Found link https://files.pythonhosted.org/packages/27/6c/5b59d3c305a25b56ec31627ba1c5fbbebe98525ffd68a242b20d448e92b6/oncodrivefml-2.2.0.tar.gz#sha256=62c63c09424e4992c3d501b81a62fa496ae96ceae5f5358636f414d2eb55ac3f (from https://pypi.org/simple/oncodrivefml/), version: 2.2.0
2020-09-11T17:35:00,764   Found link https://files.pythonhosted.org/packages/05/ae/a3359962a4ff891c830429f227d49514374de04b06435fc4b9bd7f68620b/oncodrivefml-2.3.0.tar.gz#sha256=9ef35231696a9b01867d3b89a94b9d93d16b75357497dd17544a1670b44449f9 (from https://pypi.org/simple/oncodrivefml/), version: 2.3.0
2020-09-11T17:35:00,769 Given no hashes to check 1 links for project 'oncodrivefml': discarding no candidates
2020-09-11T17:35:00,770 Using version 2.0.3 (newest of versions: 2.0.3)
2020-09-11T17:35:00,773 Collecting oncodrivefml==2.0.3
2020-09-11T17:35:00,775   Created temporary directory: /tmp/pip-unpack-vsyb77lo
2020-09-11T17:35:00,849   Downloading oncodrivefml-2.0.3.tar.gz (609 kB)
2020-09-11T17:35:01,010   Added oncodrivefml==2.0.3 from https://files.pythonhosted.org/packages/ba/c9/edbcf5450123b824ca838b5c72d4a799fe87800a2f425eddd816f3460596/oncodrivefml-2.0.3.tar.gz#sha256=b2c1571bc9ae0d0cf17c725479a5197f2ea227a5fdc700d9576264d50e6f23f0 to build tracker '/tmp/pip-req-tracker-8y2l8jpk'
2020-09-11T17:35:01,011     Running setup.py (path:/tmp/pip-wheel-kcc_btrc/oncodrivefml/setup.py) egg_info for package oncodrivefml
2020-09-11T17:35:01,012     Created temporary directory: /tmp/pip-pip-egg-info-uozd4vnm
2020-09-11T17:35:01,012     Running command python setup.py egg_info
2020-09-11T17:35:02,004     running egg_info
2020-09-11T17:35:02,006     creating /tmp/pip-pip-egg-info-uozd4vnm/oncodrivefml.egg-info
2020-09-11T17:35:02,007     writing /tmp/pip-pip-egg-info-uozd4vnm/oncodrivefml.egg-info/PKG-INFO
2020-09-11T17:35:02,009     writing dependency_links to /tmp/pip-pip-egg-info-uozd4vnm/oncodrivefml.egg-info/dependency_links.txt
2020-09-11T17:35:02,010     writing entry points to /tmp/pip-pip-egg-info-uozd4vnm/oncodrivefml.egg-info/entry_points.txt
2020-09-11T17:35:02,012     writing requirements to /tmp/pip-pip-egg-info-uozd4vnm/oncodrivefml.egg-info/requires.txt
2020-09-11T17:35:02,015     writing top-level names to /tmp/pip-pip-egg-info-uozd4vnm/oncodrivefml.egg-info/top_level.txt
2020-09-11T17:35:02,015     writing manifest file '/tmp/pip-pip-egg-info-uozd4vnm/oncodrivefml.egg-info/SOURCES.txt'
2020-09-11T17:35:02,355     reading manifest file '/tmp/pip-pip-egg-info-uozd4vnm/oncodrivefml.egg-info/SOURCES.txt'
2020-09-11T17:35:02,356     reading manifest template 'MANIFEST.in'
2020-09-11T17:35:02,358     warning: no previously-included files matching '*.c' found anywhere in distribution
2020-09-11T17:35:02,359     warning: no previously-included files matching '*.so' found anywhere in distribution
2020-09-11T17:35:02,362     writing manifest file '/tmp/pip-pip-egg-info-uozd4vnm/oncodrivefml.egg-info/SOURCES.txt'
2020-09-11T17:35:02,431   Source in /tmp/pip-wheel-kcc_btrc/oncodrivefml has version 2.0.3, which satisfies requirement oncodrivefml==2.0.3 from https://files.pythonhosted.org/packages/ba/c9/edbcf5450123b824ca838b5c72d4a799fe87800a2f425eddd816f3460596/oncodrivefml-2.0.3.tar.gz#sha256=b2c1571bc9ae0d0cf17c725479a5197f2ea227a5fdc700d9576264d50e6f23f0
2020-09-11T17:35:02,432   Removed oncodrivefml==2.0.3 from https://files.pythonhosted.org/packages/ba/c9/edbcf5450123b824ca838b5c72d4a799fe87800a2f425eddd816f3460596/oncodrivefml-2.0.3.tar.gz#sha256=b2c1571bc9ae0d0cf17c725479a5197f2ea227a5fdc700d9576264d50e6f23f0 from build tracker '/tmp/pip-req-tracker-8y2l8jpk'
2020-09-11T17:35:02,434 Building wheels for collected packages: oncodrivefml
2020-09-11T17:35:02,438   Created temporary directory: /tmp/pip-wheel-0dpd1qsn
2020-09-11T17:35:02,438   Building wheel for oncodrivefml (setup.py): started
2020-09-11T17:35:02,439   Destination directory: /tmp/pip-wheel-0dpd1qsn
2020-09-11T17:35:02,439   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-kcc_btrc/oncodrivefml/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-kcc_btrc/oncodrivefml/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-0dpd1qsn
2020-09-11T17:35:03,425   running bdist_wheel
2020-09-11T17:35:03,431   running build
2020-09-11T17:35:03,432   running build_py
2020-09-11T17:35:03,561   creating build
2020-09-11T17:35:03,561   creating build/lib.linux-armv7l-3.7
2020-09-11T17:35:03,562   creating build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T17:35:03,563   copying oncodrivefml/__init__.py -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T17:35:03,565   copying oncodrivefml/stats.py -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T17:35:03,567   copying oncodrivefml/main.py -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T17:35:03,570   copying oncodrivefml/signature.py -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T17:35:03,574   copying oncodrivefml/compute.py -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T17:35:03,577   copying oncodrivefml/store.py -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T17:35:03,580   copying oncodrivefml/config.py -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T17:35:03,583   copying oncodrivefml/mtc.py -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T17:35:03,585   copying oncodrivefml/scores.py -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T17:35:03,588   copying oncodrivefml/walker.py -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T17:35:03,591   copying oncodrivefml/load.py -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T17:35:03,595   copying oncodrivefml/utils.py -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T17:35:03,597   copying oncodrivefml/indels.py -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T17:35:03,601   creating build/lib.linux-armv7l-3.7/oncodrivefml/executors
2020-09-11T17:35:03,602   copying oncodrivefml/executors/__init__.py -> build/lib.linux-armv7l-3.7/oncodrivefml/executors
2020-09-11T17:35:03,604   copying oncodrivefml/executors/element.py -> build/lib.linux-armv7l-3.7/oncodrivefml/executors
2020-09-11T17:35:03,608   copying oncodrivefml/executors/bysample.py -> build/lib.linux-armv7l-3.7/oncodrivefml/executors
2020-09-11T17:35:03,610   copying oncodrivefml/executors/bymutation.py -> build/lib.linux-armv7l-3.7/oncodrivefml/executors
2020-09-11T17:35:03,618   copying oncodrivefml/ensembl_genes_75.txt.gz -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T17:35:03,880   copying oncodrivefml/oncodrivefml_v2.conf.template -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T17:35:03,884   copying oncodrivefml/oncodrivefml_v2.conf.template.spec -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T17:35:03,888   copying oncodrivefml/walker_cython.pyx -> build/lib.linux-armv7l-3.7/oncodrivefml
2020-09-11T17:35:03,895   running build_ext
2020-09-11T17:35:04,067   cythoning oncodrivefml/walker_cython.pyx to oncodrivefml/walker_cython.c
2020-09-11T17:35:04,672   /usr/local/lib/python3.7/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-kcc_btrc/oncodrivefml/oncodrivefml/walker_cython.pyx
2020-09-11T17:35:04,673     tree = Parsing.p_module(s, pxd, full_module_name)
2020-09-11T17:35:07,156   building 'oncodrivefml.walker_cython' extension
2020-09-11T17:35:07,157   creating build/temp.linux-armv7l-3.7
2020-09-11T17:35:07,157   creating build/temp.linux-armv7l-3.7/oncodrivefml
2020-09-11T17:35:07,158   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c oncodrivefml/walker_cython.c -o build/temp.linux-armv7l-3.7/oncodrivefml/walker_cython.o
2020-09-11T17:35:17,958   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/oncodrivefml/walker_cython.o -o build/lib.linux-armv7l-3.7/oncodrivefml/walker_cython.cpython-37m-arm-linux-gnueabihf.so
2020-09-11T17:35:18,127   installing to build/bdist.linux-armv7l/wheel
2020-09-11T17:35:18,128   running install
2020-09-11T17:35:18,129   running install_lib
2020-09-11T17:35:18,134   creating build/bdist.linux-armv7l
2020-09-11T17:35:18,134   creating build/bdist.linux-armv7l/wheel
2020-09-11T17:35:18,137   creating build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:35:18,138   copying build/lib.linux-armv7l-3.7/oncodrivefml/__init__.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:35:18,140   copying build/lib.linux-armv7l-3.7/oncodrivefml/stats.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:35:18,144   creating build/bdist.linux-armv7l/wheel/oncodrivefml/executors
2020-09-11T17:35:18,145   copying build/lib.linux-armv7l-3.7/oncodrivefml/executors/__init__.py -> build/bdist.linux-armv7l/wheel/oncodrivefml/executors
2020-09-11T17:35:18,147   copying build/lib.linux-armv7l-3.7/oncodrivefml/executors/element.py -> build/bdist.linux-armv7l/wheel/oncodrivefml/executors
2020-09-11T17:35:18,150   copying build/lib.linux-armv7l-3.7/oncodrivefml/executors/bysample.py -> build/bdist.linux-armv7l/wheel/oncodrivefml/executors
2020-09-11T17:35:18,152   copying build/lib.linux-armv7l-3.7/oncodrivefml/executors/bymutation.py -> build/bdist.linux-armv7l/wheel/oncodrivefml/executors
2020-09-11T17:35:18,154   copying build/lib.linux-armv7l-3.7/oncodrivefml/main.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:35:18,157   copying build/lib.linux-armv7l-3.7/oncodrivefml/ensembl_genes_75.txt.gz -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:35:18,189   copying build/lib.linux-armv7l-3.7/oncodrivefml/walker_cython.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:35:18,205   copying build/lib.linux-armv7l-3.7/oncodrivefml/signature.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:35:18,208   copying build/lib.linux-armv7l-3.7/oncodrivefml/compute.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:35:18,211   copying build/lib.linux-armv7l-3.7/oncodrivefml/store.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:35:18,214   copying build/lib.linux-armv7l-3.7/oncodrivefml/oncodrivefml_v2.conf.template.spec -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:35:18,216   copying build/lib.linux-armv7l-3.7/oncodrivefml/config.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:35:18,219   copying build/lib.linux-armv7l-3.7/oncodrivefml/walker_cython.pyx -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:35:18,221   copying build/lib.linux-armv7l-3.7/oncodrivefml/mtc.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:35:18,223   copying build/lib.linux-armv7l-3.7/oncodrivefml/scores.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:35:18,226   copying build/lib.linux-armv7l-3.7/oncodrivefml/walker.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:35:18,228   copying build/lib.linux-armv7l-3.7/oncodrivefml/load.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:35:18,231   copying build/lib.linux-armv7l-3.7/oncodrivefml/utils.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:35:18,234   copying build/lib.linux-armv7l-3.7/oncodrivefml/indels.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:35:18,238   copying build/lib.linux-armv7l-3.7/oncodrivefml/oncodrivefml_v2.conf.template -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-11T17:35:18,241   running install_egg_info
2020-09-11T17:35:18,267   running egg_info
2020-09-11T17:35:18,268   writing oncodrivefml.egg-info/PKG-INFO
2020-09-11T17:35:18,271   writing dependency_links to oncodrivefml.egg-info/dependency_links.txt
2020-09-11T17:35:18,273   writing entry points to oncodrivefml.egg-info/entry_points.txt
2020-09-11T17:35:18,275   writing requirements to oncodrivefml.egg-info/requires.txt
2020-09-11T17:35:18,277   writing top-level names to oncodrivefml.egg-info/top_level.txt
2020-09-11T17:35:18,284   reading manifest file 'oncodrivefml.egg-info/SOURCES.txt'
2020-09-11T17:35:18,287   reading manifest template 'MANIFEST.in'
2020-09-11T17:35:18,290   warning: no previously-included files matching '*.so' found anywhere in distribution
2020-09-11T17:35:18,293   writing manifest file 'oncodrivefml.egg-info/SOURCES.txt'
2020-09-11T17:35:18,295   Copying oncodrivefml.egg-info to build/bdist.linux-armv7l/wheel/oncodrivefml-2.0.3-py3.7.egg-info
2020-09-11T17:35:18,308   running install_scripts
2020-09-11T17:35:18,383   creating build/bdist.linux-armv7l/wheel/oncodrivefml-2.0.3.dist-info/WHEEL
2020-09-11T17:35:18,386   creating '/tmp/pip-wheel-0dpd1qsn/oncodrivefml-2.0.3-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-09-11T17:35:18,389   adding 'oncodrivefml/__init__.py'
2020-09-11T17:35:18,391   adding 'oncodrivefml/compute.py'
2020-09-11T17:35:18,392   adding 'oncodrivefml/config.py'
2020-09-11T17:35:18,456   adding 'oncodrivefml/ensembl_genes_75.txt.gz'
2020-09-11T17:35:18,462   adding 'oncodrivefml/indels.py'
2020-09-11T17:35:18,464   adding 'oncodrivefml/load.py'
2020-09-11T17:35:18,467   adding 'oncodrivefml/main.py'
2020-09-11T17:35:18,468   adding 'oncodrivefml/mtc.py'
2020-09-11T17:35:18,470   adding 'oncodrivefml/oncodrivefml_v2.conf.template'
2020-09-11T17:35:18,472   adding 'oncodrivefml/oncodrivefml_v2.conf.template.spec'
2020-09-11T17:35:18,474   adding 'oncodrivefml/scores.py'
2020-09-11T17:35:18,477   adding 'oncodrivefml/signature.py'
2020-09-11T17:35:18,479   adding 'oncodrivefml/stats.py'
2020-09-11T17:35:18,482   adding 'oncodrivefml/store.py'
2020-09-11T17:35:18,484   adding 'oncodrivefml/utils.py'
2020-09-11T17:35:18,485   adding 'oncodrivefml/walker.py'
2020-09-11T17:35:18,635   adding 'oncodrivefml/walker_cython.cpython-37m-arm-linux-gnueabihf.so'
2020-09-11T17:35:18,641   adding 'oncodrivefml/walker_cython.pyx'
2020-09-11T17:35:18,643   adding 'oncodrivefml/executors/__init__.py'
2020-09-11T17:35:18,645   adding 'oncodrivefml/executors/bymutation.py'
2020-09-11T17:35:18,646   adding 'oncodrivefml/executors/bysample.py'
2020-09-11T17:35:18,649   adding 'oncodrivefml/executors/element.py'
2020-09-11T17:35:18,651   adding 'oncodrivefml-2.0.3.dist-info/METADATA'
2020-09-11T17:35:18,653   adding 'oncodrivefml-2.0.3.dist-info/WHEEL'
2020-09-11T17:35:18,654   adding 'oncodrivefml-2.0.3.dist-info/entry_points.txt'
2020-09-11T17:35:18,655   adding 'oncodrivefml-2.0.3.dist-info/top_level.txt'
2020-09-11T17:35:18,656   adding 'oncodrivefml-2.0.3.dist-info/RECORD'
2020-09-11T17:35:18,672   removing build/bdist.linux-armv7l/wheel
2020-09-11T17:35:19,008   Building wheel for oncodrivefml (setup.py): finished with status 'done'
2020-09-11T17:35:19,019   Created wheel for oncodrivefml: filename=oncodrivefml-2.0.3-cp37-cp37m-linux_armv7l.whl size=886485 sha256=0583108d35530c237ac349b2847c7446af09593f0366cf085d9862a8afb29065
2020-09-11T17:35:19,020   Stored in directory: /tmp/pip-ephem-wheel-cache-wpfitny4/wheels/b4/3c/73/3589ab20d91d923491646b9849feac83cbd4622b776109ad45
2020-09-11T17:35:19,022 Successfully built oncodrivefml
2020-09-11T17:35:19,064 Removed build tracker: '/tmp/pip-req-tracker-8y2l8jpk'