2020-09-11T19:07:12,001 Created temporary directory: /tmp/pip-ephem-wheel-cache-ggdkr0_y 2020-09-11T19:07:12,006 Created temporary directory: /tmp/pip-req-tracker-dblrvgik 2020-09-11T19:07:12,007 Initialized build tracking at /tmp/pip-req-tracker-dblrvgik 2020-09-11T19:07:12,007 Created build tracker: /tmp/pip-req-tracker-dblrvgik 2020-09-11T19:07:12,008 Entered build tracker: /tmp/pip-req-tracker-dblrvgik 2020-09-11T19:07:12,009 Created temporary directory: /tmp/pip-wheel-3qf1oo4t 2020-09-11T19:07:12,025 1 location(s) to search for versions of gffutils: 2020-09-11T19:07:12,025 * https://pypi.org/simple/gffutils/ 2020-09-11T19:07:12,025 Fetching project page and analyzing links: https://pypi.org/simple/gffutils/ 2020-09-11T19:07:12,027 Getting page https://pypi.org/simple/gffutils/ 2020-09-11T19:07:12,031 Found index url https://pypi.org/simple 2020-09-11T19:07:12,245 Found link https://files.pythonhosted.org/packages/d9/a5/3d6f46b049c1091efcc6f6d29e9d39470f5f8d62e17cdb6fd331526fd71b/gffutils-0.0.0.tar.gz#sha256=e02b331fdfcbc6095b53126281c7591fc82bdd44ebedee4b6bff4910e8e29883 (from https://pypi.org/simple/gffutils/), version: 0.0.0 2020-09-11T19:07:12,246 Found link https://files.pythonhosted.org/packages/86/64/6dab23af4bfb4052c66a8f1f174c95d59f8e797220bfe19dfd11122538d9/gffutils-0.7.tar.gz#sha256=1e03365ed45a1dafb8ff750a562930872dc09cdd86603e3f34c81a4183571546 (from https://pypi.org/simple/gffutils/), version: 0.7 2020-09-11T19:07:12,247 Found link https://files.pythonhosted.org/packages/f9/6a/b2cf512d0772c220431fbab8465abdb2d730bd6ac22a6816e023afa675b8/gffutils-0.8.tar.gz#sha256=5eda5e365352b3c7f84fe6cff4b4f69a2c8d7ba6ea5403d53e1bb7718cd3c13f (from https://pypi.org/simple/gffutils/), version: 0.8 2020-09-11T19:07:12,248 Found link https://files.pythonhosted.org/packages/07/52/5d10ce38562ed0b8468697e09f8898b45df543d5e9fe5b6c5a4a5aca6685/gffutils-0.8.1.tar.gz#sha256=1994525e35cbf32d1a5679e9bf708b84778fb760d7889c917dd7cb571bb06ff4 (from https://pypi.org/simple/gffutils/), version: 0.8.1 2020-09-11T19:07:12,249 Found link https://files.pythonhosted.org/packages/eb/89/e2e0c90b9be07b3ab650b7474971fbf0b1e5d4d29a2b03c676ffad9501bb/gffutils-0.8.2.tar.gz#sha256=fc85976687bb8ff6742daebd7e3d3fcbf47bfda4ab8ef7e02c8b155b733ba8ac (from https://pypi.org/simple/gffutils/), version: 0.8.2 2020-09-11T19:07:12,250 Found link https://files.pythonhosted.org/packages/3e/2b/1a5d72b043c024b86d573ceab15b464acd0638b912cd30ddce71e7d93112/gffutils-0.8.3.tar.gz#sha256=9f28733ed6f9603817691c0ac14078792f7f853054ee90bc401320a495d218f2 (from https://pypi.org/simple/gffutils/), version: 0.8.3 2020-09-11T19:07:12,250 Found link https://files.pythonhosted.org/packages/8d/00/6f4f59d109bbc421ad59faf64eb31cb90858a4a316c31eb49e09467f4a93/gffutils-0.8.3.1.tar.gz#sha256=6939ff831bb2e6a33a2c99d4c57ce64b1c517ca56be3014b4171d45a86964508 (from https://pypi.org/simple/gffutils/), version: 0.8.3.1 2020-09-11T19:07:12,251 Found link https://files.pythonhosted.org/packages/d8/a3/487db49cf8b35dd17d6360f464d3524b369365e5bd7964ac32b33a6fabab/gffutils-0.8.4rc1.tar.gz#sha256=63d3ec216bb395ff8d9f9033f8aa83f82130e4ef229273e37beb1034580da666 (from https://pypi.org/simple/gffutils/), version: 0.8.4rc1 2020-09-11T19:07:12,252 Found link https://files.pythonhosted.org/packages/25/9d/97c58a9a602e41e2797747fd94b6bd4aa82331178a074c4da966030045ba/gffutils-0.8.5.tar.gz#sha256=c5acd59c55662fe082fa78bc5d5ae383e73040f7610ef8d45b8bd62d9fae74d8 (from https://pypi.org/simple/gffutils/), version: 0.8.5 2020-09-11T19:07:12,253 Found link https://files.pythonhosted.org/packages/21/b1/0ecce3b0304048241da7e830196aa50d62dfe9c9bdbf4fb48aebbf1d363e/gffutils-0.8.6.tar.gz#sha256=6cdfb77b57ef22b5971e5d876bcc89e05a5e6194589d1e283b5e9d6df83fff46 (from https://pypi.org/simple/gffutils/), version: 0.8.6 2020-09-11T19:07:12,253 Found link https://files.pythonhosted.org/packages/40/bc/85541d291c6da6570deed2988206bb322afb8d5ede1e72fd267c440a286d/gffutils-0.8.6.1.tar.gz#sha256=e421a06ef916041946f6b1dc3ae85776524c6bc3578bdbdda5f7e98d8a3d8db4 (from https://pypi.org/simple/gffutils/), version: 0.8.6.1 2020-09-11T19:07:12,254 Found link https://files.pythonhosted.org/packages/d8/bf/b630f9a006d7380d79b344b41af548c73371844737f221a9d4a59d57f91e/gffutils-0.8.7.tar.gz#sha256=4fb2c95dbf7f98e537d00995eb7aa6bf36ee70fd9a707aa3df2202c898d54c01 (from https://pypi.org/simple/gffutils/), version: 0.8.7 2020-09-11T19:07:12,255 Found link https://files.pythonhosted.org/packages/a7/fa/3d8cd13f58540098f5efb3ec7dd33d1bb6a27ee06e377e1d6a2419b4be25/gffutils-0.8.7.1.tar.gz#sha256=0fd612cdf37b9aeb0d3504bd45acde1b00574554b84095a683688595337e94e6 (from https://pypi.org/simple/gffutils/), version: 0.8.7.1 2020-09-11T19:07:12,256 Found link https://files.pythonhosted.org/packages/b4/ea/54ca403a8d471849606fb432b9afcf73c8c5105ea2dd87b8d38bd5217c5a/gffutils-0.9.tar.gz#sha256=e1b0bf2b422ec3491be13d77bf7baf71d274abd844e8f8b6c1217a95b236218b (from https://pypi.org/simple/gffutils/), version: 0.9 2020-09-11T19:07:12,257 Found link https://files.pythonhosted.org/packages/f0/cb/bbbde7e179aa5efe13f51afbef13a85a53632d94fc97755a2819d4d251c6/gffutils-0.10.tar.gz#sha256=9b1f5f30d93754e8c67503b94878dbd7d113a5acf8d04c4c363aa8a78a506b2d (from https://pypi.org/simple/gffutils/), version: 0.10 2020-09-11T19:07:12,257 Found link https://files.pythonhosted.org/packages/87/d6/f893f14fd6cf1c9e758259f6e0f9ba1ae03370988d8f1a3ea8d790ca5b06/gffutils-0.10.1.tar.gz#sha256=a8fc39006d7aa353147238160640e2210b168f7849cb99896be3fc9441e351cb (from https://pypi.org/simple/gffutils/), version: 0.10.1 2020-09-11T19:07:12,271 Given no hashes to check 1 links for project 'gffutils': discarding no candidates 2020-09-11T19:07:12,273 Using version 0.9 (newest of versions: 0.9) 2020-09-11T19:07:12,280 Collecting gffutils==0.9 2020-09-11T19:07:12,284 Created temporary directory: /tmp/pip-unpack-z5inxfh1 2020-09-11T19:07:12,538 Downloading gffutils-0.9.tar.gz (1.5 MB) 2020-09-11T19:07:13,857 Added gffutils==0.9 from https://files.pythonhosted.org/packages/b4/ea/54ca403a8d471849606fb432b9afcf73c8c5105ea2dd87b8d38bd5217c5a/gffutils-0.9.tar.gz#sha256=e1b0bf2b422ec3491be13d77bf7baf71d274abd844e8f8b6c1217a95b236218b to build tracker '/tmp/pip-req-tracker-dblrvgik' 2020-09-11T19:07:13,859 Running setup.py (path:/tmp/pip-wheel-3qf1oo4t/gffutils/setup.py) egg_info for package gffutils 2020-09-11T19:07:13,860 Created temporary directory: /tmp/pip-pip-egg-info-mg3tctyr 2020-09-11T19:07:13,861 Running command python setup.py egg_info 2020-09-11T19:07:15,708 running egg_info 2020-09-11T19:07:15,713 creating /tmp/pip-pip-egg-info-mg3tctyr/gffutils.egg-info 2020-09-11T19:07:15,714 writing dependency_links to /tmp/pip-pip-egg-info-mg3tctyr/gffutils.egg-info/dependency_links.txt 2020-09-11T19:07:15,717 writing top-level names to /tmp/pip-pip-egg-info-mg3tctyr/gffutils.egg-info/top_level.txt 2020-09-11T19:07:15,718 writing /tmp/pip-pip-egg-info-mg3tctyr/gffutils.egg-info/PKG-INFO 2020-09-11T19:07:15,722 writing requirements to /tmp/pip-pip-egg-info-mg3tctyr/gffutils.egg-info/requires.txt 2020-09-11T19:07:15,726 writing manifest file '/tmp/pip-pip-egg-info-mg3tctyr/gffutils.egg-info/SOURCES.txt' 2020-09-11T19:07:16,024 package init file 'gffutils/scripts/__init__.py' not found (or not a regular file) 2020-09-11T19:07:16,028 package init file 'gffutils/test/data/__init__.py' not found (or not a regular file) 2020-09-11T19:07:16,052 reading manifest file '/tmp/pip-pip-egg-info-mg3tctyr/gffutils.egg-info/SOURCES.txt' 2020-09-11T19:07:16,055 reading manifest template 'MANIFEST.in' 2020-09-11T19:07:16,057 warning: no files found matching '*.rst' under directory 'docs/source' 2020-09-11T19:07:16,058 warning: no files found matching '*.py' under directory 'docs/source' 2020-09-11T19:07:16,059 warning: no files found matching '*' under directory 'docs/source/images' 2020-09-11T19:07:16,061 warning: no files found matching 'docs/Makefile' 2020-09-11T19:07:16,061 warning: no files found matching 'docs/make.bat' 2020-09-11T19:07:16,063 warning: no files found matching 'gffutils/test/data/__init__.py' 2020-09-11T19:07:16,065 warning: no files found matching 'gffutils/test/data/t.py' 2020-09-11T19:07:16,075 writing manifest file '/tmp/pip-pip-egg-info-mg3tctyr/gffutils.egg-info/SOURCES.txt' 2020-09-11T19:07:16,204 Source in /tmp/pip-wheel-3qf1oo4t/gffutils has version 0.9, which satisfies requirement gffutils==0.9 from https://files.pythonhosted.org/packages/b4/ea/54ca403a8d471849606fb432b9afcf73c8c5105ea2dd87b8d38bd5217c5a/gffutils-0.9.tar.gz#sha256=e1b0bf2b422ec3491be13d77bf7baf71d274abd844e8f8b6c1217a95b236218b 2020-09-11T19:07:16,206 Removed gffutils==0.9 from https://files.pythonhosted.org/packages/b4/ea/54ca403a8d471849606fb432b9afcf73c8c5105ea2dd87b8d38bd5217c5a/gffutils-0.9.tar.gz#sha256=e1b0bf2b422ec3491be13d77bf7baf71d274abd844e8f8b6c1217a95b236218b from build tracker '/tmp/pip-req-tracker-dblrvgik' 2020-09-11T19:07:16,209 Building wheels for collected packages: gffutils 2020-09-11T19:07:16,215 Created temporary directory: /tmp/pip-wheel-go7gd8h4 2020-09-11T19:07:16,216 Building wheel for gffutils (setup.py): started 2020-09-11T19:07:16,217 Destination directory: /tmp/pip-wheel-go7gd8h4 2020-09-11T19:07:16,217 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-3qf1oo4t/gffutils/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-3qf1oo4t/gffutils/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-go7gd8h4 2020-09-11T19:07:18,032 running bdist_wheel 2020-09-11T19:07:18,045 running build 2020-09-11T19:07:18,046 running build_py 2020-09-11T19:07:18,337 creating build 2020-09-11T19:07:18,338 creating build/lib 2020-09-11T19:07:18,339 creating build/lib/gffutils 2020-09-11T19:07:18,341 copying gffutils/inspect.py -> build/lib/gffutils 2020-09-11T19:07:18,345 copying gffutils/iterators.py -> build/lib/gffutils 2020-09-11T19:07:18,348 copying gffutils/interface.py -> build/lib/gffutils 2020-09-11T19:07:18,354 copying gffutils/convert.py -> build/lib/gffutils 2020-09-11T19:07:18,357 copying gffutils/inspection.py -> build/lib/gffutils 2020-09-11T19:07:18,361 copying gffutils/bins.py -> build/lib/gffutils 2020-09-11T19:07:18,364 copying gffutils/gffwriter.py -> build/lib/gffutils 2020-09-11T19:07:18,370 copying gffutils/parser.py -> build/lib/gffutils 2020-09-11T19:07:18,375 copying gffutils/__init__.py -> build/lib/gffutils 2020-09-11T19:07:18,380 copying gffutils/helpers.py -> build/lib/gffutils 2020-09-11T19:07:18,386 copying gffutils/attributes.py -> build/lib/gffutils 2020-09-11T19:07:18,389 copying gffutils/feature.py -> build/lib/gffutils 2020-09-11T19:07:18,393 copying gffutils/biopython_integration.py -> build/lib/gffutils 2020-09-11T19:07:18,396 copying gffutils/create.py -> build/lib/gffutils 2020-09-11T19:07:18,401 copying gffutils/constants.py -> build/lib/gffutils 2020-09-11T19:07:18,405 copying gffutils/exceptions.py -> build/lib/gffutils 2020-09-11T19:07:18,409 copying gffutils/pybedtools_integration.py -> build/lib/gffutils 2020-09-11T19:07:18,415 copying gffutils/version.py -> build/lib/gffutils 2020-09-11T19:07:18,418 package init file 'gffutils/scripts/__init__.py' not found (or not a regular file) 2020-09-11T19:07:18,421 creating build/lib/gffutils/scripts 2020-09-11T19:07:18,423 copying gffutils/scripts/gffutils-flybase-convert.py -> build/lib/gffutils/scripts 2020-09-11T19:07:18,429 creating build/lib/gffutils/test 2020-09-11T19:07:18,431 copying gffutils/test/test.py -> build/lib/gffutils/test 2020-09-11T19:07:18,436 copying gffutils/test/feature_test.py -> build/lib/gffutils/test 2020-09-11T19:07:18,440 copying gffutils/test/helpers_test.py -> build/lib/gffutils/test 2020-09-11T19:07:18,443 copying gffutils/test/attr_test_cases.py -> build/lib/gffutils/test 2020-09-11T19:07:18,449 copying gffutils/test/expected.py -> build/lib/gffutils/test 2020-09-11T19:07:18,454 copying gffutils/test/__init__.py -> build/lib/gffutils/test 2020-09-11T19:07:18,458 copying gffutils/test/parser_test.py -> build/lib/gffutils/test 2020-09-11T19:07:18,464 copying gffutils/test/test_biopython_integration.py -> build/lib/gffutils/test 2020-09-11T19:07:18,468 copying gffutils/test/performance_test.py -> build/lib/gffutils/test 2020-09-11T19:07:18,471 package init file 'gffutils/test/data/__init__.py' not found (or not a regular file) 2020-09-11T19:07:18,481 creating build/lib/gffutils/test/data 2020-09-11T19:07:18,482 copying gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> build/lib/gffutils/test/data 2020-09-11T19:07:18,488 copying gffutils/test/data/c_elegans_WS199_ann_gff.txt -> build/lib/gffutils/test/data 2020-09-11T19:07:18,491 copying gffutils/test/data/gencode.vM8.chromsizes.txt -> build/lib/gffutils/test/data 2020-09-11T19:07:18,495 copying gffutils/test/data/F3-unique-3.v2.gff -> build/lib/gffutils/test/data 2020-09-11T19:07:18,500 copying gffutils/test/data/hybrid1.gff3 -> build/lib/gffutils/test/data 2020-09-11T19:07:18,504 copying gffutils/test/data/dm6-chr2L.fa -> build/lib/gffutils/test/data 2020-09-11T19:07:18,509 copying gffutils/test/data/mouse_extra_comma.gff3 -> build/lib/gffutils/test/data 2020-09-11T19:07:18,515 copying gffutils/test/data/download-large-annotation-files.sh -> build/lib/gffutils/test/data 2020-09-11T19:07:18,521 copying gffutils/test/data/jgi_gff2.txt -> build/lib/gffutils/test/data 2020-09-11T19:07:18,526 copying gffutils/test/data/random-chr.gff -> build/lib/gffutils/test/data 2020-09-11T19:07:18,530 copying gffutils/test/data/gencode-v19.gtf -> build/lib/gffutils/test/data 2020-09-11T19:07:18,535 copying gffutils/test/data/unsanitized.gff -> build/lib/gffutils/test/data 2020-09-11T19:07:18,539 copying gffutils/test/data/FBgn0031208.gtf -> build/lib/gffutils/test/data 2020-09-11T19:07:18,543 copying gffutils/test/data/intro_docs_example.gff -> build/lib/gffutils/test/data 2020-09-11T19:07:18,547 copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> build/lib/gffutils/test/data 2020-09-11T19:07:18,557 copying gffutils/test/data/wormbase_gff2.txt -> build/lib/gffutils/test/data 2020-09-11T19:07:18,563 copying gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> build/lib/gffutils/test/data 2020-09-11T19:07:18,573 copying gffutils/test/data/keep-order-test.gtf -> build/lib/gffutils/test/data 2020-09-11T19:07:18,577 copying gffutils/test/data/glimmer_nokeyval.gff3 -> build/lib/gffutils/test/data 2020-09-11T19:07:18,581 copying gffutils/test/data/keyval_sep_in_attrs.gff -> build/lib/gffutils/test/data 2020-09-11T19:07:18,584 copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> build/lib/gffutils/test/data 2020-09-11T19:07:18,588 copying gffutils/test/data/gff_example1.gff3.gz -> build/lib/gffutils/test/data 2020-09-11T19:07:18,594 copying gffutils/test/data/FBgn0031208.gff -> build/lib/gffutils/test/data 2020-09-11T19:07:18,600 copying gffutils/test/data/ensembl_gtf.txt -> build/lib/gffutils/test/data 2020-09-11T19:07:18,611 copying gffutils/test/data/wormbase_gff2_alt.txt -> build/lib/gffutils/test/data 2020-09-11T19:07:18,617 copying gffutils/test/data/gff_example1.gff3 -> build/lib/gffutils/test/data 2020-09-11T19:07:18,623 copying gffutils/test/data/ncbi_gff3.txt -> build/lib/gffutils/test/data 2020-09-11T19:07:18,629 copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> build/lib/gffutils/test/data 2020-09-11T19:07:18,638 copying gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> build/lib/gffutils/test/data 2020-09-11T19:07:18,642 copying gffutils/test/data/nonascii -> build/lib/gffutils/test/data 2020-09-11T19:07:18,646 copying gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> build/lib/gffutils/test/data 2020-09-11T19:07:19,039 copying gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> build/lib/gffutils/test/data 2020-09-11T19:07:19,053 running build_scripts 2020-09-11T19:07:19,054 creating build/scripts-3.5 2020-09-11T19:07:19,056 copying and adjusting gffutils/scripts/gffutils-cli -> build/scripts-3.5 2020-09-11T19:07:19,060 changing mode of build/scripts-3.5/gffutils-cli from 644 to 755 2020-09-11T19:07:19,070 installing to build/bdist.linux-armv7l/wheel 2020-09-11T19:07:19,072 running install 2020-09-11T19:07:19,075 running install_lib 2020-09-11T19:07:19,083 creating build/bdist.linux-armv7l 2020-09-11T19:07:19,084 creating build/bdist.linux-armv7l/wheel 2020-09-11T19:07:19,088 creating build/bdist.linux-armv7l/wheel/gffutils 2020-09-11T19:07:19,090 copying build/lib/gffutils/inspect.py -> build/bdist.linux-armv7l/wheel/gffutils 2020-09-11T19:07:19,093 copying build/lib/gffutils/iterators.py -> build/bdist.linux-armv7l/wheel/gffutils 2020-09-11T19:07:19,098 creating build/bdist.linux-armv7l/wheel/gffutils/test 2020-09-11T19:07:19,099 copying build/lib/gffutils/test/test.py -> build/bdist.linux-armv7l/wheel/gffutils/test 2020-09-11T19:07:19,105 copying build/lib/gffutils/test/feature_test.py -> build/bdist.linux-armv7l/wheel/gffutils/test 2020-09-11T19:07:19,109 copying build/lib/gffutils/test/helpers_test.py -> build/bdist.linux-armv7l/wheel/gffutils/test 2020-09-11T19:07:19,112 copying build/lib/gffutils/test/attr_test_cases.py -> build/bdist.linux-armv7l/wheel/gffutils/test 2020-09-11T19:07:19,116 copying build/lib/gffutils/test/expected.py -> build/bdist.linux-armv7l/wheel/gffutils/test 2020-09-11T19:07:19,120 copying build/lib/gffutils/test/__init__.py -> build/bdist.linux-armv7l/wheel/gffutils/test 2020-09-11T19:07:19,127 creating build/bdist.linux-armv7l/wheel/gffutils/test/data 2020-09-11T19:07:19,129 copying build/lib/gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2020-09-11T19:07:19,136 copying build/lib/gffutils/test/data/c_elegans_WS199_ann_gff.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2020-09-11T19:07:19,141 copying build/lib/gffutils/test/data/gencode.vM8.chromsizes.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2020-09-11T19:07:19,144 copying build/lib/gffutils/test/data/F3-unique-3.v2.gff -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2020-09-11T19:07:19,148 copying build/lib/gffutils/test/data/hybrid1.gff3 -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2020-09-11T19:07:19,151 copying build/lib/gffutils/test/data/dm6-chr2L.fa -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2020-09-11T19:07:19,155 copying build/lib/gffutils/test/data/mouse_extra_comma.gff3 -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2020-09-11T19:07:19,158 copying build/lib/gffutils/test/data/download-large-annotation-files.sh -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2020-09-11T19:07:19,162 copying build/lib/gffutils/test/data/jgi_gff2.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2020-09-11T19:07:19,167 copying build/lib/gffutils/test/data/random-chr.gff -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2020-09-11T19:07:19,172 copying build/lib/gffutils/test/data/gencode-v19.gtf -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2020-09-11T19:07:19,178 copying build/lib/gffutils/test/data/unsanitized.gff -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2020-09-11T19:07:19,182 copying build/lib/gffutils/test/data/FBgn0031208.gtf -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2020-09-11T19:07:19,185 copying build/lib/gffutils/test/data/intro_docs_example.gff -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2020-09-11T19:07:19,189 copying build/lib/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2020-09-11T19:07:19,195 copying build/lib/gffutils/test/data/wormbase_gff2.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2020-09-11T19:07:19,199 copying build/lib/gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2020-09-11T19:07:19,210 copying build/lib/gffutils/test/data/keep-order-test.gtf -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2020-09-11T19:07:19,214 copying build/lib/gffutils/test/data/glimmer_nokeyval.gff3 -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2020-09-11T19:07:19,219 copying build/lib/gffutils/test/data/keyval_sep_in_attrs.gff -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2020-09-11T19:07:19,223 copying build/lib/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2020-09-11T19:07:19,227 copying build/lib/gffutils/test/data/gff_example1.gff3.gz -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2020-09-11T19:07:19,230 copying build/lib/gffutils/test/data/FBgn0031208.gff -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2020-09-11T19:07:19,234 copying build/lib/gffutils/test/data/ensembl_gtf.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2020-09-11T19:07:19,237 copying build/lib/gffutils/test/data/wormbase_gff2_alt.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2020-09-11T19:07:19,241 copying build/lib/gffutils/test/data/gff_example1.gff3 -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2020-09-11T19:07:19,246 copying build/lib/gffutils/test/data/ncbi_gff3.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2020-09-11T19:07:19,252 copying build/lib/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2020-09-11T19:07:19,263 copying build/lib/gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2020-09-11T19:07:19,267 copying build/lib/gffutils/test/data/nonascii -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2020-09-11T19:07:19,270 copying build/lib/gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2020-09-11T19:07:19,668 copying build/lib/gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data 2020-09-11T19:07:19,680 copying build/lib/gffutils/test/parser_test.py -> build/bdist.linux-armv7l/wheel/gffutils/test 2020-09-11T19:07:19,686 copying build/lib/gffutils/test/test_biopython_integration.py -> build/bdist.linux-armv7l/wheel/gffutils/test 2020-09-11T19:07:19,690 copying build/lib/gffutils/test/performance_test.py -> build/bdist.linux-armv7l/wheel/gffutils/test 2020-09-11T19:07:19,694 copying build/lib/gffutils/interface.py -> build/bdist.linux-armv7l/wheel/gffutils 2020-09-11T19:07:19,699 copying build/lib/gffutils/convert.py -> build/bdist.linux-armv7l/wheel/gffutils 2020-09-11T19:07:19,702 copying build/lib/gffutils/inspection.py -> build/bdist.linux-armv7l/wheel/gffutils 2020-09-11T19:07:19,706 copying build/lib/gffutils/bins.py -> build/bdist.linux-armv7l/wheel/gffutils 2020-09-11T19:07:19,711 copying build/lib/gffutils/gffwriter.py -> build/bdist.linux-armv7l/wheel/gffutils 2020-09-11T19:07:19,716 copying build/lib/gffutils/parser.py -> build/bdist.linux-armv7l/wheel/gffutils 2020-09-11T19:07:19,722 copying build/lib/gffutils/__init__.py -> build/bdist.linux-armv7l/wheel/gffutils 2020-09-11T19:07:19,727 copying build/lib/gffutils/helpers.py -> build/bdist.linux-armv7l/wheel/gffutils 2020-09-11T19:07:19,733 copying build/lib/gffutils/attributes.py -> build/bdist.linux-armv7l/wheel/gffutils 2020-09-11T19:07:19,739 creating build/bdist.linux-armv7l/wheel/gffutils/scripts 2020-09-11T19:07:19,742 copying build/lib/gffutils/scripts/gffutils-flybase-convert.py -> build/bdist.linux-armv7l/wheel/gffutils/scripts 2020-09-11T19:07:19,748 copying build/lib/gffutils/feature.py -> build/bdist.linux-armv7l/wheel/gffutils 2020-09-11T19:07:19,752 copying build/lib/gffutils/biopython_integration.py -> build/bdist.linux-armv7l/wheel/gffutils 2020-09-11T19:07:19,756 copying build/lib/gffutils/create.py -> build/bdist.linux-armv7l/wheel/gffutils 2020-09-11T19:07:19,762 copying build/lib/gffutils/constants.py -> build/bdist.linux-armv7l/wheel/gffutils 2020-09-11T19:07:19,765 copying build/lib/gffutils/exceptions.py -> build/bdist.linux-armv7l/wheel/gffutils 2020-09-11T19:07:19,768 copying build/lib/gffutils/pybedtools_integration.py -> build/bdist.linux-armv7l/wheel/gffutils 2020-09-11T19:07:19,774 copying build/lib/gffutils/version.py -> build/bdist.linux-armv7l/wheel/gffutils 2020-09-11T19:07:19,778 running install_egg_info 2020-09-11T19:07:19,820 running egg_info 2020-09-11T19:07:19,821 writing dependency_links to gffutils.egg-info/dependency_links.txt 2020-09-11T19:07:19,823 writing requirements to gffutils.egg-info/requires.txt 2020-09-11T19:07:19,826 writing top-level names to gffutils.egg-info/top_level.txt 2020-09-11T19:07:19,828 writing gffutils.egg-info/PKG-INFO 2020-09-11T19:07:19,843 reading manifest file 'gffutils.egg-info/SOURCES.txt' 2020-09-11T19:07:19,849 reading manifest template 'MANIFEST.in' 2020-09-11T19:07:19,851 warning: no files found matching '*.rst' under directory 'docs/source' 2020-09-11T19:07:19,852 warning: no files found matching '*.py' under directory 'docs/source' 2020-09-11T19:07:19,853 warning: no files found matching '*' under directory 'docs/source/images' 2020-09-11T19:07:19,854 warning: no files found matching 'docs/Makefile' 2020-09-11T19:07:19,855 warning: no files found matching 'docs/make.bat' 2020-09-11T19:07:19,857 warning: no files found matching 'gffutils/test/data/__init__.py' 2020-09-11T19:07:19,858 warning: no files found matching 'gffutils/test/data/t.py' 2020-09-11T19:07:19,871 writing manifest file 'gffutils.egg-info/SOURCES.txt' 2020-09-11T19:07:19,873 Copying gffutils.egg-info to build/bdist.linux-armv7l/wheel/gffutils-0.9-py3.5.egg-info 2020-09-11T19:07:19,891 running install_scripts 2020-09-11T19:07:20,010 creating build/bdist.linux-armv7l/wheel/gffutils-0.9.data 2020-09-11T19:07:20,011 creating build/bdist.linux-armv7l/wheel/gffutils-0.9.data/scripts 2020-09-11T19:07:20,012 copying build/scripts-3.5/gffutils-cli -> build/bdist.linux-armv7l/wheel/gffutils-0.9.data/scripts 2020-09-11T19:07:20,016 changing mode of build/bdist.linux-armv7l/wheel/gffutils-0.9.data/scripts/gffutils-cli to 755 2020-09-11T19:07:20,063 creating build/bdist.linux-armv7l/wheel/gffutils-0.9.dist-info/WHEEL 2020-09-11T19:07:21,649 Building wheel for gffutils (setup.py): finished with status 'done' 2020-09-11T19:07:21,676 Created wheel for gffutils: filename=gffutils-0.9-py3-none-any.whl size=1602077 sha256=467fd84f30d0f2fca1ef1197c9794c050ca041b3c89fc2f717ff1b775ee263c7 2020-09-11T19:07:21,677 Stored in directory: /tmp/pip-ephem-wheel-cache-ggdkr0_y/wheels/58/9b/82/0ab61c540c0b45e65d6492d6d85d01f3e5d66ed2ffd3d90336 2020-09-11T19:07:21,680 Successfully built gffutils 2020-09-11T19:07:22,297 Removed build tracker: '/tmp/pip-req-tracker-dblrvgik'