2020-09-11T20:51:02,777 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-09-11T20:51:03,422 Created temporary directory: /tmp/pip-ephem-wheel-cache-yk_ffbby
2020-09-11T20:51:03,426 Created temporary directory: /tmp/pip-req-tracker-yx0me44r
2020-09-11T20:51:03,427 Initialized build tracking at /tmp/pip-req-tracker-yx0me44r
2020-09-11T20:51:03,428 Created build tracker: /tmp/pip-req-tracker-yx0me44r
2020-09-11T20:51:03,428 Entered build tracker: /tmp/pip-req-tracker-yx0me44r
2020-09-11T20:51:03,429 Created temporary directory: /tmp/pip-wheel-lofjk9y2
2020-09-11T20:51:03,448 1 location(s) to search for versions of pyfastaq:
2020-09-11T20:51:03,448 * https://pypi.org/simple/pyfastaq/
2020-09-11T20:51:03,449 Fetching project page and analyzing links: https://pypi.org/simple/pyfastaq/
2020-09-11T20:51:03,451 Getting page https://pypi.org/simple/pyfastaq/
2020-09-11T20:51:03,455 Found index url https://pypi.org/simple
2020-09-11T20:51:03,808   Found link https://files.pythonhosted.org/packages/36/ed/d740797f95b7b113c0979dc56648ed219340ed21c4926fd72466c0cc88af/pyfastaq-3.0.1.tar.gz#sha256=abfdd057c03c53913e15af37b05fc47a865631b550a03d9145326dde4f599322 (from https://pypi.org/simple/pyfastaq/), version: 3.0.1
2020-09-11T20:51:03,810   Found link https://files.pythonhosted.org/packages/64/dd/cea4f3f3aa398245bb65484e767f9789238fcc04d3a4c5660ee874342b33/pyfastaq-3.2.0.tar.gz#sha256=24baa9013e5911918a7465a043bb97e61e3fd28f7021012217aa240744bec95f (from https://pypi.org/simple/pyfastaq/), version: 3.2.0
2020-09-11T20:51:03,811   Found link https://files.pythonhosted.org/packages/d5/f5/e57e945ac3f836f0525e5d9bf54a981c994444bf9de6445f87066ffe7650/pyfastaq-3.3.0.tar.gz#sha256=acca17e68fb07b6a3c71f46c85372b2119325d83fc0a08599fa8d1b6199cdd03 (from https://pypi.org/simple/pyfastaq/), version: 3.3.0
2020-09-11T20:51:03,812   Found link https://files.pythonhosted.org/packages/a6/d8/b080d44a23f57c0dfe387f97804b03992c3496877928c22c54c7112d3219/pyfastaq-3.3.1.tar.gz#sha256=94c6da60e8dfe582ac3db0beb337d0f4772d3a1ea408969d6446d81dba0d5751 (from https://pypi.org/simple/pyfastaq/), version: 3.3.1
2020-09-11T20:51:03,813   Found link https://files.pythonhosted.org/packages/4a/cc/127a596b8971d4ec81f69f0a76e60dc72bfe9d359d11ded08f8a0b447285/pyfastaq-3.4.0.tar.gz#sha256=e35e558f2b246a311c17441c99b9dc5e307fb749792e7041b20a1ba5ac138924 (from https://pypi.org/simple/pyfastaq/), version: 3.4.0
2020-09-11T20:51:03,814   Found link https://files.pythonhosted.org/packages/45/37/7a0dc69b3affdfac70919f337e08099c4eeaefedf2782d17a1f3e04bec46/pyfastaq-3.5.0.tar.gz#sha256=599b28db5a05072335eacd3cea458aff511239e34a9559aaf2e7fe94cce785a9 (from https://pypi.org/simple/pyfastaq/), version: 3.5.0
2020-09-11T20:51:03,815   Found link https://files.pythonhosted.org/packages/d4/99/5adb0efe820a9993fbcc0be844e5372227f5ca5cd55102461aa78a6ed9a0/pyfastaq-3.6.0.tar.gz#sha256=3a052466f89db1e1ac6cfb475117fdf8466ed319b62aabf9531e38f569b51588 (from https://pypi.org/simple/pyfastaq/), version: 3.6.0
2020-09-11T20:51:03,815   Found link https://files.pythonhosted.org/packages/83/66/76240bd0fadd6a0808596c930e8dc7cec25c45b5581f77996e8cad7250a8/pyfastaq-3.6.1.tar.gz#sha256=187245939ceeaaafe2145ff08662ef25a1a5fc7e06dbc0ddcb7c5bc4e5a90b8a (from https://pypi.org/simple/pyfastaq/), version: 3.6.1
2020-09-11T20:51:03,816   Found link https://files.pythonhosted.org/packages/48/16/a8c6b9f661682f0775f670dfa70e658e3aa2fad0f77d89b3f7fd4b1dc0c4/pyfastaq-3.8.0.tar.gz#sha256=9055bc04f0a669283c8d3925df64e4f9a54568e8b3c4e0de9da187e380d55865 (from https://pypi.org/simple/pyfastaq/), version: 3.8.0
2020-09-11T20:51:03,817   Found link https://files.pythonhosted.org/packages/f3/7e/8cf32f7a9513c1d67308b3252d1aa48de2ed7c94ea522d899124a3e064aa/pyfastaq-3.9.0.tar.gz#sha256=d840e56086c6e6e699b59083ccbc222bdcee234e06cdd49b12492e09a3ac4a8d (from https://pypi.org/simple/pyfastaq/), version: 3.9.0
2020-09-11T20:51:03,818   Found link https://files.pythonhosted.org/packages/66/76/4716b417ccecd9f084691160608a40a699a9174b2016d1d0c2cc05f8c439/pyfastaq-3.10.0.tar.gz#sha256=a09604f5143abf27280abbdfcdb85878f760380876a971139b9536955f1cb73c (from https://pypi.org/simple/pyfastaq/), version: 3.10.0
2020-09-11T20:51:03,819   Found link https://files.pythonhosted.org/packages/5b/e0/1b4256c16d9f09f79dd8fe56c4483ce9b4c6aa9759602af175320713d6c9/pyfastaq-3.10.1.tar.gz#sha256=96df96feacf3bdfce937e78886a4cc06005c1db27aede8f8e921fc438aaf4b01 (from https://pypi.org/simple/pyfastaq/), version: 3.10.1
2020-09-11T20:51:03,820   Found link https://files.pythonhosted.org/packages/72/f1/d6e984e10e854dee0bacc75c6b60716b9d7c1ac36a913f1f9215e68748e7/pyfastaq-3.11.0.tar.gz#sha256=343fa8eb4aa959c1d66050e2e864e4d3c49d80a41e3c51196a14df38220dba59 (from https://pypi.org/simple/pyfastaq/), version: 3.11.0
2020-09-11T20:51:03,821   Found link https://files.pythonhosted.org/packages/b2/32/2fdf9d19632d3931a1c962bacff999e4f0a27e5a36c450115f101890bea4/pyfastaq-3.11.1.tar.gz#sha256=bee81a896117c506a12f2a56f02eac10721c2a158adc9a6f88dfa31a6df727c2 (from https://pypi.org/simple/pyfastaq/), version: 3.11.1
2020-09-11T20:51:03,822   Found link https://files.pythonhosted.org/packages/c4/eb/bea30e05075961eecd4410b92cab6d417a38e4cdff4d3075e6c52121e4fe/pyfastaq-3.12.0.tar.gz#sha256=a3a03db385e6eaffa44b659594877bf95d78ac1b1c93d5498a7f0b9e4c4fe2aa (from https://pypi.org/simple/pyfastaq/), version: 3.12.0
2020-09-11T20:51:03,823   Found link https://files.pythonhosted.org/packages/99/59/9967177929c61cec55205a39e91df3dd7634397d8cb3b40ce66a296ab76b/pyfastaq-3.12.1.tar.gz#sha256=996dee7c5583b9c06c0a96a9e539d5f4218c084a3b2ee757fb245b4222b2a829 (from https://pypi.org/simple/pyfastaq/), version: 3.12.1
2020-09-11T20:51:03,823   Found link https://files.pythonhosted.org/packages/2a/46/6ece19838a79489556c97092e832bafeb46e7b28c52418a6c5a7568da999/pyfastaq-3.13.0.tar.gz#sha256=79bfe342e053d51efbc7a901489c62e996566b4baf0f33cde1caff3a387756af (from https://pypi.org/simple/pyfastaq/), version: 3.13.0
2020-09-11T20:51:03,824   Found link https://files.pythonhosted.org/packages/0e/5d/8b39442b62c43da835c89f4c244d037bc7fcd8b47b0c0fff6e8d9097a035/pyfastaq-3.14.0.tar.gz#sha256=54dc8cc8b3d24111f6939cf563833b8e9e78777b9cf7b82ca8ddec04aa1c05f2 (from https://pypi.org/simple/pyfastaq/), version: 3.14.0
2020-09-11T20:51:03,825   Found link https://files.pythonhosted.org/packages/32/db/235ff9020c825d547a11e449c315b0a8f90f1afdd5dcc78e89580f561f7f/pyfastaq-3.15.0.tar.gz#sha256=30013f38956535fddddedda03dc072e808704f6e026231dd1539869a08afcbe8 (from https://pypi.org/simple/pyfastaq/), version: 3.15.0
2020-09-11T20:51:03,826   Found link https://files.pythonhosted.org/packages/91/5e/cd2a8b4e3b601b89b9af2ecd706ffade96b6b2c89b2f8d50ab8a8bac3fed/pyfastaq-3.16.0.tar.gz#sha256=368f3f1752668283f5d1aac4ea80e9595a57dc92a7d4925d723407f862af0e4e (from https://pypi.org/simple/pyfastaq/), version: 3.16.0
2020-09-11T20:51:03,827   Found link https://files.pythonhosted.org/packages/28/9d/afbedb1994c9e9076d2bf87865ad74ed60a28cde651ce58952ac53534f28/pyfastaq-3.17.0.tar.gz#sha256=40c6dc0cea72c0ab91d10e5627a26dea1783b7e5e3edcfff8e1dc960bfd71cdc (from https://pypi.org/simple/pyfastaq/), version: 3.17.0
2020-09-11T20:51:03,846 Given no hashes to check 1 links for project 'pyfastaq': discarding no candidates
2020-09-11T20:51:03,848 Using version 3.16.0 (newest of versions: 3.16.0)
2020-09-11T20:51:03,856 Collecting pyfastaq==3.16.0
2020-09-11T20:51:03,861   Created temporary directory: /tmp/pip-unpack-ftn4bqfu
2020-09-11T20:51:04,093   Downloading pyfastaq-3.16.0.tar.gz (49 kB)
2020-09-11T20:51:05,151   Added pyfastaq==3.16.0 from https://files.pythonhosted.org/packages/91/5e/cd2a8b4e3b601b89b9af2ecd706ffade96b6b2c89b2f8d50ab8a8bac3fed/pyfastaq-3.16.0.tar.gz#sha256=368f3f1752668283f5d1aac4ea80e9595a57dc92a7d4925d723407f862af0e4e to build tracker '/tmp/pip-req-tracker-yx0me44r'
2020-09-11T20:51:05,153     Running setup.py (path:/tmp/pip-wheel-lofjk9y2/pyfastaq/setup.py) egg_info for package pyfastaq
2020-09-11T20:51:05,154     Created temporary directory: /tmp/pip-pip-egg-info-m07d3bxq
2020-09-11T20:51:05,155     Running command python setup.py egg_info
2020-09-11T20:51:07,212     running egg_info
2020-09-11T20:51:07,217     creating /tmp/pip-pip-egg-info-m07d3bxq/pyfastaq.egg-info
2020-09-11T20:51:07,219     writing dependency_links to /tmp/pip-pip-egg-info-m07d3bxq/pyfastaq.egg-info/dependency_links.txt
2020-09-11T20:51:07,223     writing top-level names to /tmp/pip-pip-egg-info-m07d3bxq/pyfastaq.egg-info/top_level.txt
2020-09-11T20:51:07,227     writing /tmp/pip-pip-egg-info-m07d3bxq/pyfastaq.egg-info/PKG-INFO
2020-09-11T20:51:07,233     writing manifest file '/tmp/pip-pip-egg-info-m07d3bxq/pyfastaq.egg-info/SOURCES.txt'
2020-09-11T20:51:07,602     reading manifest file '/tmp/pip-pip-egg-info-m07d3bxq/pyfastaq.egg-info/SOURCES.txt'
2020-09-11T20:51:07,605     reading manifest template 'MANIFEST.in'
2020-09-11T20:51:08,238     writing manifest file '/tmp/pip-pip-egg-info-m07d3bxq/pyfastaq.egg-info/SOURCES.txt'
2020-09-11T20:51:08,375   Source in /tmp/pip-wheel-lofjk9y2/pyfastaq has version 3.16.0, which satisfies requirement pyfastaq==3.16.0 from https://files.pythonhosted.org/packages/91/5e/cd2a8b4e3b601b89b9af2ecd706ffade96b6b2c89b2f8d50ab8a8bac3fed/pyfastaq-3.16.0.tar.gz#sha256=368f3f1752668283f5d1aac4ea80e9595a57dc92a7d4925d723407f862af0e4e
2020-09-11T20:51:08,377   Removed pyfastaq==3.16.0 from https://files.pythonhosted.org/packages/91/5e/cd2a8b4e3b601b89b9af2ecd706ffade96b6b2c89b2f8d50ab8a8bac3fed/pyfastaq-3.16.0.tar.gz#sha256=368f3f1752668283f5d1aac4ea80e9595a57dc92a7d4925d723407f862af0e4e from build tracker '/tmp/pip-req-tracker-yx0me44r'
2020-09-11T20:51:08,380 Building wheels for collected packages: pyfastaq
2020-09-11T20:51:08,390   Created temporary directory: /tmp/pip-wheel-eempbsr1
2020-09-11T20:51:08,391   Building wheel for pyfastaq (setup.py): started
2020-09-11T20:51:08,391   Destination directory: /tmp/pip-wheel-eempbsr1
2020-09-11T20:51:08,392   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-lofjk9y2/pyfastaq/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-lofjk9y2/pyfastaq/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-eempbsr1
2020-09-11T20:51:10,443   running bdist_wheel
2020-09-11T20:51:10,458   running build
2020-09-11T20:51:10,458   running build_py
2020-09-11T20:51:10,797   creating build
2020-09-11T20:51:10,798   creating build/lib
2020-09-11T20:51:10,799   creating build/lib/pyfastaq
2020-09-11T20:51:10,802   copying pyfastaq/tasks.py -> build/lib/pyfastaq
2020-09-11T20:51:10,810   copying pyfastaq/intervals.py -> build/lib/pyfastaq
2020-09-11T20:51:10,815   copying pyfastaq/utils.py -> build/lib/pyfastaq
2020-09-11T20:51:10,820   copying pyfastaq/caf.py -> build/lib/pyfastaq
2020-09-11T20:51:10,826   copying pyfastaq/genetic_codes.py -> build/lib/pyfastaq
2020-09-11T20:51:10,831   copying pyfastaq/__init__.py -> build/lib/pyfastaq
2020-09-11T20:51:10,837   copying pyfastaq/sequences.py -> build/lib/pyfastaq
2020-09-11T20:51:10,855   creating build/lib/pyfastaq/runners
2020-09-11T20:51:10,858   copying pyfastaq/runners/trim_ends.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:10,863   copying pyfastaq/runners/interleave.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:10,867   copying pyfastaq/runners/replace_bases.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:10,871   copying pyfastaq/runners/capillary_to_pairs.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:10,876   copying pyfastaq/runners/get_seq_flanking_gaps.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:10,881   copying pyfastaq/runners/to_unique_by_id.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:10,887   copying pyfastaq/runners/deinterleave.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:10,893   copying pyfastaq/runners/to_mira_xml.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:10,899   copying pyfastaq/runners/translate.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:10,905   copying pyfastaq/runners/filter.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:10,911   copying pyfastaq/runners/get_ids.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:10,917   copying pyfastaq/runners/sort_by_size.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:10,923   copying pyfastaq/runners/expand_nucleotides.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:10,928   copying pyfastaq/runners/fasta_to_fastq.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:10,934   copying pyfastaq/runners/trim_Ns_at_end.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:10,940   copying pyfastaq/runners/to_perfect_reads.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:10,947   copying pyfastaq/runners/to_random_subset.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:10,953   copying pyfastaq/runners/trim_contigs.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:10,959   copying pyfastaq/runners/caf_to_fastq.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:10,964   copying pyfastaq/runners/acgtn_only.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:10,968   copying pyfastaq/runners/add_indels.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:10,973   copying pyfastaq/runners/merge.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:10,978   copying pyfastaq/runners/to_fasta.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:10,983   copying pyfastaq/runners/strip_illumina_suffix.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:10,988   copying pyfastaq/runners/make_random_contigs.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:10,994   copying pyfastaq/runners/scaffolds_to_contigs.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:11,000   copying pyfastaq/runners/reverse_complement.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:11,006   copying pyfastaq/runners/to_fake_qual.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:11,012   copying pyfastaq/runners/to_orfs_gff.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:11,018   copying pyfastaq/runners/sequence_trim.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:11,024   copying pyfastaq/runners/enumerate_names.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:11,030   copying pyfastaq/runners/sort_by_name.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:11,036   copying pyfastaq/runners/version.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:11,042   copying pyfastaq/runners/count_sequences.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:11,048   copying pyfastaq/runners/to_boulderio.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:11,054   copying pyfastaq/runners/chunker.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:11,059   copying pyfastaq/runners/__init__.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:11,064   copying pyfastaq/runners/search_for_seq.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:11,068   copying pyfastaq/runners/split_by_base_count.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:11,073   copying pyfastaq/runners/to_tiling_bam.py -> build/lib/pyfastaq/runners
2020-09-11T20:51:11,085   running build_scripts
2020-09-11T20:51:11,085   creating build/scripts-3.5
2020-09-11T20:51:11,089   copying and adjusting scripts/fastaq -> build/scripts-3.5
2020-09-11T20:51:11,092   changing mode of build/scripts-3.5/fastaq from 644 to 755
2020-09-11T20:51:11,098   installing to build/bdist.linux-armv7l/wheel
2020-09-11T20:51:11,099   running install
2020-09-11T20:51:11,101   running install_lib
2020-09-11T20:51:11,108   creating build/bdist.linux-armv7l
2020-09-11T20:51:11,109   creating build/bdist.linux-armv7l/wheel
2020-09-11T20:51:11,113   creating build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-11T20:51:11,115   copying build/lib/pyfastaq/tasks.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-11T20:51:11,123   copying build/lib/pyfastaq/intervals.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-11T20:51:11,127   copying build/lib/pyfastaq/utils.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-11T20:51:11,133   copying build/lib/pyfastaq/caf.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-11T20:51:11,138   copying build/lib/pyfastaq/genetic_codes.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-11T20:51:11,147   creating build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,150   copying build/lib/pyfastaq/runners/trim_ends.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,156   copying build/lib/pyfastaq/runners/interleave.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,162   copying build/lib/pyfastaq/runners/replace_bases.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,167   copying build/lib/pyfastaq/runners/capillary_to_pairs.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,173   copying build/lib/pyfastaq/runners/get_seq_flanking_gaps.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,178   copying build/lib/pyfastaq/runners/to_unique_by_id.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,184   copying build/lib/pyfastaq/runners/deinterleave.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,190   copying build/lib/pyfastaq/runners/to_mira_xml.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,195   copying build/lib/pyfastaq/runners/translate.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,201   copying build/lib/pyfastaq/runners/filter.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,207   copying build/lib/pyfastaq/runners/get_ids.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,213   copying build/lib/pyfastaq/runners/sort_by_size.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,218   copying build/lib/pyfastaq/runners/expand_nucleotides.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,224   copying build/lib/pyfastaq/runners/fasta_to_fastq.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,230   copying build/lib/pyfastaq/runners/trim_Ns_at_end.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,235   copying build/lib/pyfastaq/runners/to_perfect_reads.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,242   copying build/lib/pyfastaq/runners/to_random_subset.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,247   copying build/lib/pyfastaq/runners/trim_contigs.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,253   copying build/lib/pyfastaq/runners/caf_to_fastq.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,259   copying build/lib/pyfastaq/runners/acgtn_only.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,264   copying build/lib/pyfastaq/runners/add_indels.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,271   copying build/lib/pyfastaq/runners/merge.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,276   copying build/lib/pyfastaq/runners/to_fasta.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,282   copying build/lib/pyfastaq/runners/strip_illumina_suffix.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,287   copying build/lib/pyfastaq/runners/make_random_contigs.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,293   copying build/lib/pyfastaq/runners/scaffolds_to_contigs.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,298   copying build/lib/pyfastaq/runners/reverse_complement.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,304   copying build/lib/pyfastaq/runners/to_fake_qual.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,310   copying build/lib/pyfastaq/runners/to_orfs_gff.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,315   copying build/lib/pyfastaq/runners/sequence_trim.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,321   copying build/lib/pyfastaq/runners/enumerate_names.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,327   copying build/lib/pyfastaq/runners/sort_by_name.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,333   copying build/lib/pyfastaq/runners/version.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,338   copying build/lib/pyfastaq/runners/count_sequences.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,344   copying build/lib/pyfastaq/runners/to_boulderio.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,350   copying build/lib/pyfastaq/runners/chunker.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,355   copying build/lib/pyfastaq/runners/__init__.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,360   copying build/lib/pyfastaq/runners/search_for_seq.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,366   copying build/lib/pyfastaq/runners/split_by_base_count.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,372   copying build/lib/pyfastaq/runners/to_tiling_bam.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T20:51:11,377   copying build/lib/pyfastaq/__init__.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-11T20:51:11,383   copying build/lib/pyfastaq/sequences.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-11T20:51:11,390   running install_egg_info
2020-09-11T20:51:11,444   running egg_info
2020-09-11T20:51:11,445   writing top-level names to pyfastaq.egg-info/top_level.txt
2020-09-11T20:51:11,448   writing pyfastaq.egg-info/PKG-INFO
2020-09-11T20:51:11,452   writing dependency_links to pyfastaq.egg-info/dependency_links.txt
2020-09-11T20:51:11,469   reading manifest file 'pyfastaq.egg-info/SOURCES.txt'
2020-09-11T20:51:11,536   reading manifest template 'MANIFEST.in'
2020-09-11T20:51:12,229   writing manifest file 'pyfastaq.egg-info/SOURCES.txt'
2020-09-11T20:51:12,234   Copying pyfastaq.egg-info to build/bdist.linux-armv7l/wheel/pyfastaq-3.16.0-py3.5.egg-info
2020-09-11T20:51:12,259   running install_scripts
2020-09-11T20:51:12,393   creating build/bdist.linux-armv7l/wheel/pyfastaq-3.16.0.data
2020-09-11T20:51:12,393   creating build/bdist.linux-armv7l/wheel/pyfastaq-3.16.0.data/scripts
2020-09-11T20:51:12,396   copying build/scripts-3.5/fastaq -> build/bdist.linux-armv7l/wheel/pyfastaq-3.16.0.data/scripts
2020-09-11T20:51:12,401   changing mode of build/bdist.linux-armv7l/wheel/pyfastaq-3.16.0.data/scripts/fastaq to 755
2020-09-11T20:51:12,452   creating build/bdist.linux-armv7l/wheel/pyfastaq-3.16.0.dist-info/WHEEL
2020-09-11T20:51:12,862   Building wheel for pyfastaq (setup.py): finished with status 'done'
2020-09-11T20:51:12,867   Created wheel for pyfastaq: filename=pyfastaq-3.16.0-py3-none-any.whl size=44799 sha256=68d3341a515c8c274e8a4b976810407174dd32326e784feea7eaeecf0cadf381
2020-09-11T20:51:12,868   Stored in directory: /tmp/pip-ephem-wheel-cache-yk_ffbby/wheels/2c/f6/b2/8bdf30d3f771fe26cc913e4529cf21dbd2b742163c48dc89f3
2020-09-11T20:51:12,872 Successfully built pyfastaq
2020-09-11T20:51:12,886 Removed build tracker: '/tmp/pip-req-tracker-yx0me44r'