2020-09-11T21:59:25,117 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-09-11T21:59:25,788 Created temporary directory: /tmp/pip-ephem-wheel-cache-mcf04yow
2020-09-11T21:59:25,792 Created temporary directory: /tmp/pip-req-tracker-h47zktw7
2020-09-11T21:59:25,793 Initialized build tracking at /tmp/pip-req-tracker-h47zktw7
2020-09-11T21:59:25,794 Created build tracker: /tmp/pip-req-tracker-h47zktw7
2020-09-11T21:59:25,794 Entered build tracker: /tmp/pip-req-tracker-h47zktw7
2020-09-11T21:59:25,796 Created temporary directory: /tmp/pip-wheel-wxxojxgi
2020-09-11T21:59:25,815 1 location(s) to search for versions of pyfastaq:
2020-09-11T21:59:25,815 * https://pypi.org/simple/pyfastaq/
2020-09-11T21:59:25,816 Fetching project page and analyzing links: https://pypi.org/simple/pyfastaq/
2020-09-11T21:59:25,818 Getting page https://pypi.org/simple/pyfastaq/
2020-09-11T21:59:25,822 Found index url https://pypi.org/simple
2020-09-11T21:59:26,177   Found link https://files.pythonhosted.org/packages/36/ed/d740797f95b7b113c0979dc56648ed219340ed21c4926fd72466c0cc88af/pyfastaq-3.0.1.tar.gz#sha256=abfdd057c03c53913e15af37b05fc47a865631b550a03d9145326dde4f599322 (from https://pypi.org/simple/pyfastaq/), version: 3.0.1
2020-09-11T21:59:26,178   Found link https://files.pythonhosted.org/packages/64/dd/cea4f3f3aa398245bb65484e767f9789238fcc04d3a4c5660ee874342b33/pyfastaq-3.2.0.tar.gz#sha256=24baa9013e5911918a7465a043bb97e61e3fd28f7021012217aa240744bec95f (from https://pypi.org/simple/pyfastaq/), version: 3.2.0
2020-09-11T21:59:26,179   Found link https://files.pythonhosted.org/packages/d5/f5/e57e945ac3f836f0525e5d9bf54a981c994444bf9de6445f87066ffe7650/pyfastaq-3.3.0.tar.gz#sha256=acca17e68fb07b6a3c71f46c85372b2119325d83fc0a08599fa8d1b6199cdd03 (from https://pypi.org/simple/pyfastaq/), version: 3.3.0
2020-09-11T21:59:26,180   Found link https://files.pythonhosted.org/packages/a6/d8/b080d44a23f57c0dfe387f97804b03992c3496877928c22c54c7112d3219/pyfastaq-3.3.1.tar.gz#sha256=94c6da60e8dfe582ac3db0beb337d0f4772d3a1ea408969d6446d81dba0d5751 (from https://pypi.org/simple/pyfastaq/), version: 3.3.1
2020-09-11T21:59:26,181   Found link https://files.pythonhosted.org/packages/4a/cc/127a596b8971d4ec81f69f0a76e60dc72bfe9d359d11ded08f8a0b447285/pyfastaq-3.4.0.tar.gz#sha256=e35e558f2b246a311c17441c99b9dc5e307fb749792e7041b20a1ba5ac138924 (from https://pypi.org/simple/pyfastaq/), version: 3.4.0
2020-09-11T21:59:26,182   Found link https://files.pythonhosted.org/packages/45/37/7a0dc69b3affdfac70919f337e08099c4eeaefedf2782d17a1f3e04bec46/pyfastaq-3.5.0.tar.gz#sha256=599b28db5a05072335eacd3cea458aff511239e34a9559aaf2e7fe94cce785a9 (from https://pypi.org/simple/pyfastaq/), version: 3.5.0
2020-09-11T21:59:26,182   Found link https://files.pythonhosted.org/packages/d4/99/5adb0efe820a9993fbcc0be844e5372227f5ca5cd55102461aa78a6ed9a0/pyfastaq-3.6.0.tar.gz#sha256=3a052466f89db1e1ac6cfb475117fdf8466ed319b62aabf9531e38f569b51588 (from https://pypi.org/simple/pyfastaq/), version: 3.6.0
2020-09-11T21:59:26,183   Found link https://files.pythonhosted.org/packages/83/66/76240bd0fadd6a0808596c930e8dc7cec25c45b5581f77996e8cad7250a8/pyfastaq-3.6.1.tar.gz#sha256=187245939ceeaaafe2145ff08662ef25a1a5fc7e06dbc0ddcb7c5bc4e5a90b8a (from https://pypi.org/simple/pyfastaq/), version: 3.6.1
2020-09-11T21:59:26,184   Found link https://files.pythonhosted.org/packages/48/16/a8c6b9f661682f0775f670dfa70e658e3aa2fad0f77d89b3f7fd4b1dc0c4/pyfastaq-3.8.0.tar.gz#sha256=9055bc04f0a669283c8d3925df64e4f9a54568e8b3c4e0de9da187e380d55865 (from https://pypi.org/simple/pyfastaq/), version: 3.8.0
2020-09-11T21:59:26,185   Found link https://files.pythonhosted.org/packages/f3/7e/8cf32f7a9513c1d67308b3252d1aa48de2ed7c94ea522d899124a3e064aa/pyfastaq-3.9.0.tar.gz#sha256=d840e56086c6e6e699b59083ccbc222bdcee234e06cdd49b12492e09a3ac4a8d (from https://pypi.org/simple/pyfastaq/), version: 3.9.0
2020-09-11T21:59:26,186   Found link https://files.pythonhosted.org/packages/66/76/4716b417ccecd9f084691160608a40a699a9174b2016d1d0c2cc05f8c439/pyfastaq-3.10.0.tar.gz#sha256=a09604f5143abf27280abbdfcdb85878f760380876a971139b9536955f1cb73c (from https://pypi.org/simple/pyfastaq/), version: 3.10.0
2020-09-11T21:59:26,187   Found link https://files.pythonhosted.org/packages/5b/e0/1b4256c16d9f09f79dd8fe56c4483ce9b4c6aa9759602af175320713d6c9/pyfastaq-3.10.1.tar.gz#sha256=96df96feacf3bdfce937e78886a4cc06005c1db27aede8f8e921fc438aaf4b01 (from https://pypi.org/simple/pyfastaq/), version: 3.10.1
2020-09-11T21:59:26,188   Found link https://files.pythonhosted.org/packages/72/f1/d6e984e10e854dee0bacc75c6b60716b9d7c1ac36a913f1f9215e68748e7/pyfastaq-3.11.0.tar.gz#sha256=343fa8eb4aa959c1d66050e2e864e4d3c49d80a41e3c51196a14df38220dba59 (from https://pypi.org/simple/pyfastaq/), version: 3.11.0
2020-09-11T21:59:26,189   Found link https://files.pythonhosted.org/packages/b2/32/2fdf9d19632d3931a1c962bacff999e4f0a27e5a36c450115f101890bea4/pyfastaq-3.11.1.tar.gz#sha256=bee81a896117c506a12f2a56f02eac10721c2a158adc9a6f88dfa31a6df727c2 (from https://pypi.org/simple/pyfastaq/), version: 3.11.1
2020-09-11T21:59:26,190   Found link https://files.pythonhosted.org/packages/c4/eb/bea30e05075961eecd4410b92cab6d417a38e4cdff4d3075e6c52121e4fe/pyfastaq-3.12.0.tar.gz#sha256=a3a03db385e6eaffa44b659594877bf95d78ac1b1c93d5498a7f0b9e4c4fe2aa (from https://pypi.org/simple/pyfastaq/), version: 3.12.0
2020-09-11T21:59:26,190   Found link https://files.pythonhosted.org/packages/99/59/9967177929c61cec55205a39e91df3dd7634397d8cb3b40ce66a296ab76b/pyfastaq-3.12.1.tar.gz#sha256=996dee7c5583b9c06c0a96a9e539d5f4218c084a3b2ee757fb245b4222b2a829 (from https://pypi.org/simple/pyfastaq/), version: 3.12.1
2020-09-11T21:59:26,191   Found link https://files.pythonhosted.org/packages/2a/46/6ece19838a79489556c97092e832bafeb46e7b28c52418a6c5a7568da999/pyfastaq-3.13.0.tar.gz#sha256=79bfe342e053d51efbc7a901489c62e996566b4baf0f33cde1caff3a387756af (from https://pypi.org/simple/pyfastaq/), version: 3.13.0
2020-09-11T21:59:26,192   Found link https://files.pythonhosted.org/packages/0e/5d/8b39442b62c43da835c89f4c244d037bc7fcd8b47b0c0fff6e8d9097a035/pyfastaq-3.14.0.tar.gz#sha256=54dc8cc8b3d24111f6939cf563833b8e9e78777b9cf7b82ca8ddec04aa1c05f2 (from https://pypi.org/simple/pyfastaq/), version: 3.14.0
2020-09-11T21:59:26,193   Found link https://files.pythonhosted.org/packages/32/db/235ff9020c825d547a11e449c315b0a8f90f1afdd5dcc78e89580f561f7f/pyfastaq-3.15.0.tar.gz#sha256=30013f38956535fddddedda03dc072e808704f6e026231dd1539869a08afcbe8 (from https://pypi.org/simple/pyfastaq/), version: 3.15.0
2020-09-11T21:59:26,194   Found link https://files.pythonhosted.org/packages/91/5e/cd2a8b4e3b601b89b9af2ecd706ffade96b6b2c89b2f8d50ab8a8bac3fed/pyfastaq-3.16.0.tar.gz#sha256=368f3f1752668283f5d1aac4ea80e9595a57dc92a7d4925d723407f862af0e4e (from https://pypi.org/simple/pyfastaq/), version: 3.16.0
2020-09-11T21:59:26,195   Found link https://files.pythonhosted.org/packages/28/9d/afbedb1994c9e9076d2bf87865ad74ed60a28cde651ce58952ac53534f28/pyfastaq-3.17.0.tar.gz#sha256=40c6dc0cea72c0ab91d10e5627a26dea1783b7e5e3edcfff8e1dc960bfd71cdc (from https://pypi.org/simple/pyfastaq/), version: 3.17.0
2020-09-11T21:59:26,214 Given no hashes to check 1 links for project 'pyfastaq': discarding no candidates
2020-09-11T21:59:26,216 Using version 3.17.0 (newest of versions: 3.17.0)
2020-09-11T21:59:26,224 Collecting pyfastaq==3.17.0
2020-09-11T21:59:26,229   Created temporary directory: /tmp/pip-unpack-cg0yynyu
2020-09-11T21:59:26,324   Downloading pyfastaq-3.17.0.tar.gz (51 kB)
2020-09-11T21:59:27,373   Added pyfastaq==3.17.0 from https://files.pythonhosted.org/packages/28/9d/afbedb1994c9e9076d2bf87865ad74ed60a28cde651ce58952ac53534f28/pyfastaq-3.17.0.tar.gz#sha256=40c6dc0cea72c0ab91d10e5627a26dea1783b7e5e3edcfff8e1dc960bfd71cdc to build tracker '/tmp/pip-req-tracker-h47zktw7'
2020-09-11T21:59:27,375     Running setup.py (path:/tmp/pip-wheel-wxxojxgi/pyfastaq/setup.py) egg_info for package pyfastaq
2020-09-11T21:59:27,376     Created temporary directory: /tmp/pip-pip-egg-info-ju8fi8f4
2020-09-11T21:59:27,377     Running command python setup.py egg_info
2020-09-11T21:59:29,484     running egg_info
2020-09-11T21:59:29,490     creating /tmp/pip-pip-egg-info-ju8fi8f4/pyfastaq.egg-info
2020-09-11T21:59:29,493     writing /tmp/pip-pip-egg-info-ju8fi8f4/pyfastaq.egg-info/PKG-INFO
2020-09-11T21:59:29,498     writing top-level names to /tmp/pip-pip-egg-info-ju8fi8f4/pyfastaq.egg-info/top_level.txt
2020-09-11T21:59:29,501     writing dependency_links to /tmp/pip-pip-egg-info-ju8fi8f4/pyfastaq.egg-info/dependency_links.txt
2020-09-11T21:59:29,506     writing manifest file '/tmp/pip-pip-egg-info-ju8fi8f4/pyfastaq.egg-info/SOURCES.txt'
2020-09-11T21:59:29,874     reading manifest file '/tmp/pip-pip-egg-info-ju8fi8f4/pyfastaq.egg-info/SOURCES.txt'
2020-09-11T21:59:29,877     reading manifest template 'MANIFEST.in'
2020-09-11T21:59:30,510     writing manifest file '/tmp/pip-pip-egg-info-ju8fi8f4/pyfastaq.egg-info/SOURCES.txt'
2020-09-11T21:59:30,647   Source in /tmp/pip-wheel-wxxojxgi/pyfastaq has version 3.17.0, which satisfies requirement pyfastaq==3.17.0 from https://files.pythonhosted.org/packages/28/9d/afbedb1994c9e9076d2bf87865ad74ed60a28cde651ce58952ac53534f28/pyfastaq-3.17.0.tar.gz#sha256=40c6dc0cea72c0ab91d10e5627a26dea1783b7e5e3edcfff8e1dc960bfd71cdc
2020-09-11T21:59:30,648   Removed pyfastaq==3.17.0 from https://files.pythonhosted.org/packages/28/9d/afbedb1994c9e9076d2bf87865ad74ed60a28cde651ce58952ac53534f28/pyfastaq-3.17.0.tar.gz#sha256=40c6dc0cea72c0ab91d10e5627a26dea1783b7e5e3edcfff8e1dc960bfd71cdc from build tracker '/tmp/pip-req-tracker-h47zktw7'
2020-09-11T21:59:30,652 Building wheels for collected packages: pyfastaq
2020-09-11T21:59:30,660   Created temporary directory: /tmp/pip-wheel-73o8rgxo
2020-09-11T21:59:30,661   Building wheel for pyfastaq (setup.py): started
2020-09-11T21:59:30,662   Destination directory: /tmp/pip-wheel-73o8rgxo
2020-09-11T21:59:30,663   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-wxxojxgi/pyfastaq/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-wxxojxgi/pyfastaq/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-73o8rgxo
2020-09-11T21:59:32,715   running bdist_wheel
2020-09-11T21:59:32,730   running build
2020-09-11T21:59:32,730   running build_py
2020-09-11T21:59:33,069   creating build
2020-09-11T21:59:33,070   creating build/lib
2020-09-11T21:59:33,072   creating build/lib/pyfastaq
2020-09-11T21:59:33,075   copying pyfastaq/genetic_codes.py -> build/lib/pyfastaq
2020-09-11T21:59:33,080   copying pyfastaq/intervals.py -> build/lib/pyfastaq
2020-09-11T21:59:33,084   copying pyfastaq/tasks.py -> build/lib/pyfastaq
2020-09-11T21:59:33,092   copying pyfastaq/caf.py -> build/lib/pyfastaq
2020-09-11T21:59:33,097   copying pyfastaq/utils.py -> build/lib/pyfastaq
2020-09-11T21:59:33,102   copying pyfastaq/__init__.py -> build/lib/pyfastaq
2020-09-11T21:59:33,108   copying pyfastaq/sequences.py -> build/lib/pyfastaq
2020-09-11T21:59:33,125   creating build/lib/pyfastaq/runners
2020-09-11T21:59:33,128   copying pyfastaq/runners/make_random_contigs.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,133   copying pyfastaq/runners/to_random_subset.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,137   copying pyfastaq/runners/scaffolds_to_contigs.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,141   copying pyfastaq/runners/acgtn_only.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,146   copying pyfastaq/runners/split_by_base_count.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,152   copying pyfastaq/runners/get_ids.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,158   copying pyfastaq/runners/count_sequences.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,164   copying pyfastaq/runners/merge.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,170   copying pyfastaq/runners/capillary_to_pairs.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,176   copying pyfastaq/runners/to_boulderio.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,182   copying pyfastaq/runners/strip_illumina_suffix.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,188   copying pyfastaq/runners/to_fake_qual.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,193   copying pyfastaq/runners/interleave.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,200   copying pyfastaq/runners/translate.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,205   copying pyfastaq/runners/get_seq_flanking_gaps.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,211   copying pyfastaq/runners/caf_to_fastq.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,217   copying pyfastaq/runners/trim_ends.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,223   copying pyfastaq/runners/fasta_to_fastq.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,229   copying pyfastaq/runners/search_for_seq.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,235   copying pyfastaq/runners/sort_by_name.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,241   copying pyfastaq/runners/trim_contigs.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,247   copying pyfastaq/runners/to_unique_by_id.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,253   copying pyfastaq/runners/deinterleave.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,259   copying pyfastaq/runners/to_perfect_reads.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,266   copying pyfastaq/runners/sequence_trim.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,272   copying pyfastaq/runners/sort_by_size.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,278   copying pyfastaq/runners/add_indels.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,285   copying pyfastaq/runners/expand_nucleotides.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,291   copying pyfastaq/runners/filter.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,298   copying pyfastaq/runners/reverse_complement.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,305   copying pyfastaq/runners/__init__.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,311   copying pyfastaq/runners/chunker.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,316   copying pyfastaq/runners/to_fasta.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,322   copying pyfastaq/runners/replace_bases.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,327   copying pyfastaq/runners/version.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,332   copying pyfastaq/runners/enumerate_names.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,338   copying pyfastaq/runners/to_tiling_bam.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,343   copying pyfastaq/runners/to_mira_xml.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,348   copying pyfastaq/runners/to_orfs_gff.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,354   copying pyfastaq/runners/trim_Ns_at_end.py -> build/lib/pyfastaq/runners
2020-09-11T21:59:33,366   running build_scripts
2020-09-11T21:59:33,368   creating build/scripts-3.5
2020-09-11T21:59:33,372   copying and adjusting scripts/fastaq -> build/scripts-3.5
2020-09-11T21:59:33,376   changing mode of build/scripts-3.5/fastaq from 644 to 755
2020-09-11T21:59:33,383   installing to build/bdist.linux-armv7l/wheel
2020-09-11T21:59:33,384   running install
2020-09-11T21:59:33,387   running install_lib
2020-09-11T21:59:33,395   creating build/bdist.linux-armv7l
2020-09-11T21:59:33,397   creating build/bdist.linux-armv7l/wheel
2020-09-11T21:59:33,402   creating build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-11T21:59:33,405   copying build/lib/pyfastaq/genetic_codes.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-11T21:59:33,410   copying build/lib/pyfastaq/intervals.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-11T21:59:33,418   creating build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,421   copying build/lib/pyfastaq/runners/make_random_contigs.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,427   copying build/lib/pyfastaq/runners/to_random_subset.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,432   copying build/lib/pyfastaq/runners/scaffolds_to_contigs.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,439   copying build/lib/pyfastaq/runners/acgtn_only.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,446   copying build/lib/pyfastaq/runners/split_by_base_count.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,454   copying build/lib/pyfastaq/runners/get_ids.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,459   copying build/lib/pyfastaq/runners/count_sequences.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,464   copying build/lib/pyfastaq/runners/merge.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,469   copying build/lib/pyfastaq/runners/capillary_to_pairs.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,474   copying build/lib/pyfastaq/runners/to_boulderio.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,481   copying build/lib/pyfastaq/runners/strip_illumina_suffix.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,487   copying build/lib/pyfastaq/runners/to_fake_qual.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,492   copying build/lib/pyfastaq/runners/interleave.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,498   copying build/lib/pyfastaq/runners/translate.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,504   copying build/lib/pyfastaq/runners/get_seq_flanking_gaps.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,509   copying build/lib/pyfastaq/runners/caf_to_fastq.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,515   copying build/lib/pyfastaq/runners/trim_ends.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,520   copying build/lib/pyfastaq/runners/fasta_to_fastq.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,526   copying build/lib/pyfastaq/runners/search_for_seq.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,532   copying build/lib/pyfastaq/runners/sort_by_name.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,537   copying build/lib/pyfastaq/runners/trim_contigs.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,543   copying build/lib/pyfastaq/runners/to_unique_by_id.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,548   copying build/lib/pyfastaq/runners/deinterleave.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,554   copying build/lib/pyfastaq/runners/to_perfect_reads.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,561   copying build/lib/pyfastaq/runners/sequence_trim.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,567   copying build/lib/pyfastaq/runners/sort_by_size.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,572   copying build/lib/pyfastaq/runners/add_indels.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,579   copying build/lib/pyfastaq/runners/expand_nucleotides.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,586   copying build/lib/pyfastaq/runners/filter.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,593   copying build/lib/pyfastaq/runners/reverse_complement.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,599   copying build/lib/pyfastaq/runners/__init__.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,603   copying build/lib/pyfastaq/runners/chunker.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,609   copying build/lib/pyfastaq/runners/to_fasta.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,614   copying build/lib/pyfastaq/runners/replace_bases.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,619   copying build/lib/pyfastaq/runners/version.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,624   copying build/lib/pyfastaq/runners/enumerate_names.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,629   copying build/lib/pyfastaq/runners/to_tiling_bam.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,634   copying build/lib/pyfastaq/runners/to_mira_xml.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,641   copying build/lib/pyfastaq/runners/to_orfs_gff.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,648   copying build/lib/pyfastaq/runners/trim_Ns_at_end.py -> build/bdist.linux-armv7l/wheel/pyfastaq/runners
2020-09-11T21:59:33,655   copying build/lib/pyfastaq/tasks.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-11T21:59:33,664   copying build/lib/pyfastaq/caf.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-11T21:59:33,669   copying build/lib/pyfastaq/utils.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-11T21:59:33,674   copying build/lib/pyfastaq/__init__.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-11T21:59:33,678   copying build/lib/pyfastaq/sequences.py -> build/bdist.linux-armv7l/wheel/pyfastaq
2020-09-11T21:59:33,686   running install_egg_info
2020-09-11T21:59:33,733   running egg_info
2020-09-11T21:59:33,735   writing pyfastaq.egg-info/PKG-INFO
2020-09-11T21:59:33,739   writing dependency_links to pyfastaq.egg-info/dependency_links.txt
2020-09-11T21:59:33,743   writing top-level names to pyfastaq.egg-info/top_level.txt
2020-09-11T21:59:33,759   reading manifest file 'pyfastaq.egg-info/SOURCES.txt'
2020-09-11T21:59:33,818   reading manifest template 'MANIFEST.in'
2020-09-11T21:59:34,505   writing manifest file 'pyfastaq.egg-info/SOURCES.txt'
2020-09-11T21:59:34,510   Copying pyfastaq.egg-info to build/bdist.linux-armv7l/wheel/pyfastaq-3.17.0-py3.5.egg-info
2020-09-11T21:59:34,532   running install_scripts
2020-09-11T21:59:34,669   creating build/bdist.linux-armv7l/wheel/pyfastaq-3.17.0.data
2020-09-11T21:59:34,670   creating build/bdist.linux-armv7l/wheel/pyfastaq-3.17.0.data/scripts
2020-09-11T21:59:34,673   copying build/scripts-3.5/fastaq -> build/bdist.linux-armv7l/wheel/pyfastaq-3.17.0.data/scripts
2020-09-11T21:59:34,677   changing mode of build/bdist.linux-armv7l/wheel/pyfastaq-3.17.0.data/scripts/fastaq to 755
2020-09-11T21:59:34,728   creating build/bdist.linux-armv7l/wheel/pyfastaq-3.17.0.dist-info/WHEEL
2020-09-11T21:59:35,121   Building wheel for pyfastaq (setup.py): finished with status 'done'
2020-09-11T21:59:35,126   Created wheel for pyfastaq: filename=pyfastaq-3.17.0-py3-none-any.whl size=45308 sha256=c6f25eeba4cb5d9ab1c0b4fb3f0e676b17fcfc322dec9e7cefdd916e53c4ff76
2020-09-11T21:59:35,127   Stored in directory: /tmp/pip-ephem-wheel-cache-mcf04yow/wheels/dd/3a/1c/4e01ac481ecb64711f7f3d46427318fb1524b13abfebb6de5c
2020-09-11T21:59:35,131 Successfully built pyfastaq
2020-09-11T21:59:35,146 Removed build tracker: '/tmp/pip-req-tracker-h47zktw7'