2020-09-12T02:17:24,917 Created temporary directory: /tmp/pip-ephem-wheel-cache-67nroyw2
2020-09-12T02:17:24,924 Created temporary directory: /tmp/pip-req-tracker-_ud3mj01
2020-09-12T02:17:24,925 Initialized build tracking at /tmp/pip-req-tracker-_ud3mj01
2020-09-12T02:17:24,925 Created build tracker: /tmp/pip-req-tracker-_ud3mj01
2020-09-12T02:17:24,926 Entered build tracker: /tmp/pip-req-tracker-_ud3mj01
2020-09-12T02:17:24,927 Created temporary directory: /tmp/pip-wheel-cjp1ns3e
2020-09-12T02:17:24,946 Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com
2020-09-12T02:17:24,949 2 location(s) to search for versions of oncodrivefml:
2020-09-12T02:17:24,949 * https://pypi.org/simple/oncodrivefml/
2020-09-12T02:17:24,949 * https://pypi.ngc.nvidia.com/oncodrivefml/
2020-09-12T02:17:24,950 Fetching project page and analyzing links: https://pypi.org/simple/oncodrivefml/
2020-09-12T02:17:24,952 Getting page https://pypi.org/simple/oncodrivefml/
2020-09-12T02:17:24,956 Found index url https://pypi.org/simple
2020-09-12T02:17:25,283   Found link https://files.pythonhosted.org/packages/db/67/1739dcef8c63626fda8b6a772cd8d82710adcf4e7a6dbb3185acb54af065/oncodrivefml-1.0.1.tar.gz#sha256=85568115bfa2ae7d1b77cd046fbcf97cd7fc26e3820611dff782ed96ef305161 (from https://pypi.org/simple/oncodrivefml/), version: 1.0.1
2020-09-12T02:17:25,284   Found link https://files.pythonhosted.org/packages/4c/5d/8770a0cf7425743d3b67ea91207dfc619f7a0826df1f82aac907388a9709/oncodrivefml-2.0.1.tar.gz#sha256=02cf92cea9d9bc0b7cdc8a2365a16d3d11b8dc829193bd31254831616064d5a9 (from https://pypi.org/simple/oncodrivefml/), version: 2.0.1
2020-09-12T02:17:25,285   Found link https://files.pythonhosted.org/packages/37/ec/1b093916cb9c9ba337fa9ae09a5d828e797f40e41050d1cbb59cf6eecdae/oncodrivefml-2.0.2.tar.gz#sha256=7b7ba10f48efeafe259627f2f1d0400189e23c3ef805c306679d014b6eac411f (from https://pypi.org/simple/oncodrivefml/), version: 2.0.2
2020-09-12T02:17:25,286   Found link https://files.pythonhosted.org/packages/ba/c9/edbcf5450123b824ca838b5c72d4a799fe87800a2f425eddd816f3460596/oncodrivefml-2.0.3.tar.gz#sha256=b2c1571bc9ae0d0cf17c725479a5197f2ea227a5fdc700d9576264d50e6f23f0 (from https://pypi.org/simple/oncodrivefml/), version: 2.0.3
2020-09-12T02:17:25,287   Found link https://files.pythonhosted.org/packages/ba/68/07a64ac621ccc248d4c8d2757cfb15c847ee2bc4e061a74b0e669698ba93/oncodrivefml-2.1.2.tar.gz#sha256=198b891604b2ff000fc973a779a89648957599ecdcccaefbacf9225f575c988a (from https://pypi.org/simple/oncodrivefml/), version: 2.1.2
2020-09-12T02:17:25,288   Found link https://files.pythonhosted.org/packages/68/6c/c86613b66f24ab8ff575c270865e9bf6fdd167bc52570c42a0114c72f65e/oncodrivefml-2.1.3.tar.gz#sha256=beba29277206e276b8d5face41e0b916c4b2089ef7a6bb707f0983b7eb2cf0a1 (from https://pypi.org/simple/oncodrivefml/), version: 2.1.3
2020-09-12T02:17:25,289   Found link https://files.pythonhosted.org/packages/27/6c/5b59d3c305a25b56ec31627ba1c5fbbebe98525ffd68a242b20d448e92b6/oncodrivefml-2.2.0.tar.gz#sha256=62c63c09424e4992c3d501b81a62fa496ae96ceae5f5358636f414d2eb55ac3f (from https://pypi.org/simple/oncodrivefml/), version: 2.2.0
2020-09-12T02:17:25,290   Found link https://files.pythonhosted.org/packages/05/ae/a3359962a4ff891c830429f227d49514374de04b06435fc4b9bd7f68620b/oncodrivefml-2.3.0.tar.gz#sha256=9ef35231696a9b01867d3b89a94b9d93d16b75357497dd17544a1670b44449f9 (from https://pypi.org/simple/oncodrivefml/), version: 2.3.0
2020-09-12T02:17:25,290 Fetching project page and analyzing links: https://pypi.ngc.nvidia.com/oncodrivefml/
2020-09-12T02:17:25,291 Getting page https://pypi.ngc.nvidia.com/oncodrivefml/
2020-09-12T02:17:25,294 Found index url https://pypi.ngc.nvidia.com
2020-09-12T02:17:26,328 Could not fetch URL https://pypi.ngc.nvidia.com/oncodrivefml/: 404 Client Error: Not Found for url: https://developer.download.nvidia.com/compute/redist/oncodrivefml/ - skipping
2020-09-12T02:17:26,350 Given no hashes to check 1 links for project 'oncodrivefml': discarding no candidates
2020-09-12T02:17:26,351 Using version 2.1.2 (newest of versions: 2.1.2)
2020-09-12T02:17:26,360 Collecting oncodrivefml==2.1.2
2020-09-12T02:17:26,365   Created temporary directory: /tmp/pip-unpack-3ozb2git
2020-09-12T02:17:26,821   Downloading oncodrivefml-2.1.2.tar.gz (610 kB)
2020-09-12T02:17:27,248   Added oncodrivefml==2.1.2 from https://files.pythonhosted.org/packages/ba/68/07a64ac621ccc248d4c8d2757cfb15c847ee2bc4e061a74b0e669698ba93/oncodrivefml-2.1.2.tar.gz#sha256=198b891604b2ff000fc973a779a89648957599ecdcccaefbacf9225f575c988a to build tracker '/tmp/pip-req-tracker-_ud3mj01'
2020-09-12T02:17:27,251     Running setup.py (path:/tmp/pip-wheel-cjp1ns3e/oncodrivefml/setup.py) egg_info for package oncodrivefml
2020-09-12T02:17:27,253     Created temporary directory: /tmp/pip-pip-egg-info-prpyrpgs
2020-09-12T02:17:27,254     Running command python setup.py egg_info
2020-09-12T02:17:29,741     running egg_info
2020-09-12T02:17:29,746     creating /tmp/pip-pip-egg-info-prpyrpgs/oncodrivefml.egg-info
2020-09-12T02:17:29,748     writing dependency_links to /tmp/pip-pip-egg-info-prpyrpgs/oncodrivefml.egg-info/dependency_links.txt
2020-09-12T02:17:29,752     writing top-level names to /tmp/pip-pip-egg-info-prpyrpgs/oncodrivefml.egg-info/top_level.txt
2020-09-12T02:17:29,754     writing /tmp/pip-pip-egg-info-prpyrpgs/oncodrivefml.egg-info/PKG-INFO
2020-09-12T02:17:29,758     writing entry points to /tmp/pip-pip-egg-info-prpyrpgs/oncodrivefml.egg-info/entry_points.txt
2020-09-12T02:17:29,761     writing requirements to /tmp/pip-pip-egg-info-prpyrpgs/oncodrivefml.egg-info/requires.txt
2020-09-12T02:17:29,765     writing manifest file '/tmp/pip-pip-egg-info-prpyrpgs/oncodrivefml.egg-info/SOURCES.txt'
2020-09-12T02:17:30,585     reading manifest file '/tmp/pip-pip-egg-info-prpyrpgs/oncodrivefml.egg-info/SOURCES.txt'
2020-09-12T02:17:30,589     reading manifest template 'MANIFEST.in'
2020-09-12T02:17:30,593     warning: no previously-included files matching '*.c' found anywhere in distribution
2020-09-12T02:17:30,594     warning: no previously-included files matching '*.so' found anywhere in distribution
2020-09-12T02:17:30,601     writing manifest file '/tmp/pip-pip-egg-info-prpyrpgs/oncodrivefml.egg-info/SOURCES.txt'
2020-09-12T02:17:30,764   Source in /tmp/pip-wheel-cjp1ns3e/oncodrivefml has version 2.1.2, which satisfies requirement oncodrivefml==2.1.2 from https://files.pythonhosted.org/packages/ba/68/07a64ac621ccc248d4c8d2757cfb15c847ee2bc4e061a74b0e669698ba93/oncodrivefml-2.1.2.tar.gz#sha256=198b891604b2ff000fc973a779a89648957599ecdcccaefbacf9225f575c988a
2020-09-12T02:17:30,765   Removed oncodrivefml==2.1.2 from https://files.pythonhosted.org/packages/ba/68/07a64ac621ccc248d4c8d2757cfb15c847ee2bc4e061a74b0e669698ba93/oncodrivefml-2.1.2.tar.gz#sha256=198b891604b2ff000fc973a779a89648957599ecdcccaefbacf9225f575c988a from build tracker '/tmp/pip-req-tracker-_ud3mj01'
2020-09-12T02:17:30,769 Building wheels for collected packages: oncodrivefml
2020-09-12T02:17:30,778   Created temporary directory: /tmp/pip-wheel-ee5lalm1
2020-09-12T02:17:30,779   Building wheel for oncodrivefml (setup.py): started
2020-09-12T02:17:30,779   Destination directory: /tmp/pip-wheel-ee5lalm1
2020-09-12T02:17:30,780   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-cjp1ns3e/oncodrivefml/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-cjp1ns3e/oncodrivefml/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ee5lalm1
2020-09-12T02:17:33,283   running bdist_wheel
2020-09-12T02:17:33,299   running build
2020-09-12T02:17:33,300   running build_py
2020-09-12T02:17:33,642   creating build
2020-09-12T02:17:33,642   creating build/lib.linux-armv7l-3.5
2020-09-12T02:17:33,644   creating build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:17:33,647   copying oncodrivefml/walker.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:17:33,652   copying oncodrivefml/utils.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:17:33,657   copying oncodrivefml/stats.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:17:33,663   copying oncodrivefml/load.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:17:33,669   copying oncodrivefml/indels.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:17:33,678   copying oncodrivefml/config.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:17:33,685   copying oncodrivefml/mtc.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:17:33,692   copying oncodrivefml/signature.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:17:33,699   copying oncodrivefml/compute.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:17:33,704   copying oncodrivefml/__init__.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:17:33,708   copying oncodrivefml/scores.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:17:33,717   copying oncodrivefml/main.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:17:33,727   copying oncodrivefml/store.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:17:33,739   creating build/lib.linux-armv7l-3.5/oncodrivefml/executors
2020-09-12T02:17:33,743   copying oncodrivefml/executors/bymutation.py -> build/lib.linux-armv7l-3.5/oncodrivefml/executors
2020-09-12T02:17:33,751   copying oncodrivefml/executors/bysample.py -> build/lib.linux-armv7l-3.5/oncodrivefml/executors
2020-09-12T02:17:33,757   copying oncodrivefml/executors/element.py -> build/lib.linux-armv7l-3.5/oncodrivefml/executors
2020-09-12T02:17:33,764   copying oncodrivefml/executors/__init__.py -> build/lib.linux-armv7l-3.5/oncodrivefml/executors
2020-09-12T02:17:33,777   copying oncodrivefml/ensembl_genes_75.txt.gz -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:17:33,837   copying oncodrivefml/oncodrivefml_v2.conf.template -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:17:33,846   copying oncodrivefml/oncodrivefml_v2.conf.template.spec -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:17:33,854   copying oncodrivefml/walker_cython.pyx -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:17:33,863   running build_ext
2020-09-12T02:17:34,298   cythoning oncodrivefml/walker_cython.pyx to oncodrivefml/walker_cython.c
2020-09-12T02:17:35,940   /usr/local/lib/python3.5/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-cjp1ns3e/oncodrivefml/oncodrivefml/walker_cython.pyx
2020-09-12T02:17:35,941     tree = Parsing.p_module(s, pxd, full_module_name)
2020-09-12T02:17:42,797   building 'oncodrivefml.walker_cython' extension
2020-09-12T02:17:42,799   creating build/temp.linux-armv7l-3.5
2020-09-12T02:17:42,801   creating build/temp.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:17:42,802   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c oncodrivefml/walker_cython.c -o build/temp.linux-armv7l-3.5/oncodrivefml/walker_cython.o
2020-09-12T02:18:03,250   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/oncodrivefml/walker_cython.o -o build/lib.linux-armv7l-3.5/oncodrivefml/walker_cython.cpython-35m-arm-linux-gnueabihf.so
2020-09-12T02:18:03,548   installing to build/bdist.linux-armv7l/wheel
2020-09-12T02:18:03,550   running install
2020-09-12T02:18:03,553   running install_lib
2020-09-12T02:18:03,566   creating build/bdist.linux-armv7l
2020-09-12T02:18:03,567   creating build/bdist.linux-armv7l/wheel
2020-09-12T02:18:03,571   creating build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:18:03,573   copying build/lib.linux-armv7l-3.5/oncodrivefml/walker.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:18:03,578   copying build/lib.linux-armv7l-3.5/oncodrivefml/utils.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:18:03,583   creating build/bdist.linux-armv7l/wheel/oncodrivefml/executors
2020-09-12T02:18:03,585   copying build/lib.linux-armv7l-3.5/oncodrivefml/executors/bymutation.py -> build/bdist.linux-armv7l/wheel/oncodrivefml/executors
2020-09-12T02:18:03,592   copying build/lib.linux-armv7l-3.5/oncodrivefml/executors/bysample.py -> build/bdist.linux-armv7l/wheel/oncodrivefml/executors
2020-09-12T02:18:03,597   copying build/lib.linux-armv7l-3.5/oncodrivefml/executors/element.py -> build/bdist.linux-armv7l/wheel/oncodrivefml/executors
2020-09-12T02:18:03,604   copying build/lib.linux-armv7l-3.5/oncodrivefml/executors/__init__.py -> build/bdist.linux-armv7l/wheel/oncodrivefml/executors
2020-09-12T02:18:03,609   copying build/lib.linux-armv7l-3.5/oncodrivefml/ensembl_genes_75.txt.gz -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:18:03,670   copying build/lib.linux-armv7l-3.5/oncodrivefml/stats.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:18:03,675   copying build/lib.linux-armv7l-3.5/oncodrivefml/load.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:18:03,680   copying build/lib.linux-armv7l-3.5/oncodrivefml/indels.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:18:03,685   copying build/lib.linux-armv7l-3.5/oncodrivefml/config.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:18:03,690   copying build/lib.linux-armv7l-3.5/oncodrivefml/walker_cython.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:18:03,750   copying build/lib.linux-armv7l-3.5/oncodrivefml/mtc.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:18:03,754   copying build/lib.linux-armv7l-3.5/oncodrivefml/signature.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:18:03,760   copying build/lib.linux-armv7l-3.5/oncodrivefml/oncodrivefml_v2.conf.template.spec -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:18:03,764   copying build/lib.linux-armv7l-3.5/oncodrivefml/walker_cython.pyx -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:18:03,769   copying build/lib.linux-armv7l-3.5/oncodrivefml/compute.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:18:03,774   copying build/lib.linux-armv7l-3.5/oncodrivefml/__init__.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:18:03,780   copying build/lib.linux-armv7l-3.5/oncodrivefml/oncodrivefml_v2.conf.template -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:18:03,786   copying build/lib.linux-armv7l-3.5/oncodrivefml/scores.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:18:03,793   copying build/lib.linux-armv7l-3.5/oncodrivefml/main.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:18:03,799   copying build/lib.linux-armv7l-3.5/oncodrivefml/store.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:18:03,805   running install_egg_info
2020-09-12T02:18:03,865   running egg_info
2020-09-12T02:18:03,868   writing oncodrivefml.egg-info/PKG-INFO
2020-09-12T02:18:03,873   writing requirements to oncodrivefml.egg-info/requires.txt
2020-09-12T02:18:03,875   writing dependency_links to oncodrivefml.egg-info/dependency_links.txt
2020-09-12T02:18:03,878   writing entry points to oncodrivefml.egg-info/entry_points.txt
2020-09-12T02:18:03,880   writing top-level names to oncodrivefml.egg-info/top_level.txt
2020-09-12T02:18:03,897   reading manifest file 'oncodrivefml.egg-info/SOURCES.txt'
2020-09-12T02:18:03,902   reading manifest template 'MANIFEST.in'
2020-09-12T02:18:03,908   warning: no previously-included files matching '*.so' found anywhere in distribution
2020-09-12T02:18:03,916   writing manifest file 'oncodrivefml.egg-info/SOURCES.txt'
2020-09-12T02:18:03,919   Copying oncodrivefml.egg-info to build/bdist.linux-armv7l/wheel/oncodrivefml-2.1.2-py3.5.egg-info
2020-09-12T02:18:03,953   running install_scripts
2020-09-12T02:18:04,119   creating build/bdist.linux-armv7l/wheel/oncodrivefml-2.1.2.dist-info/WHEEL
2020-09-12T02:18:05,340   Building wheel for oncodrivefml (setup.py): finished with status 'done'
2020-09-12T02:18:05,361   Created wheel for oncodrivefml: filename=oncodrivefml-2.1.2-cp35-cp35m-linux_armv7l.whl size=838803 sha256=69952a135b4c5225cd49085a04e1f5dfa633be320cad9d55443cf70bcc678712
2020-09-12T02:18:05,362   Stored in directory: /tmp/pip-ephem-wheel-cache-67nroyw2/wheels/45/d6/d1/8971abbb4b96a44508752b40bb84fa30de4a5eedc5bbd72057
2020-09-12T02:18:05,365 Successfully built oncodrivefml
2020-09-12T02:18:05,520 Removed build tracker: '/tmp/pip-req-tracker-_ud3mj01'