2020-09-12T02:41:41,260 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-09-12T02:41:41,827 Created temporary directory: /tmp/pip-ephem-wheel-cache-tutb4c4z
2020-09-12T02:41:41,831 Created temporary directory: /tmp/pip-req-tracker-4v52h1jl
2020-09-12T02:41:41,832 Initialized build tracking at /tmp/pip-req-tracker-4v52h1jl
2020-09-12T02:41:41,832 Created build tracker: /tmp/pip-req-tracker-4v52h1jl
2020-09-12T02:41:41,832 Entered build tracker: /tmp/pip-req-tracker-4v52h1jl
2020-09-12T02:41:41,834 Created temporary directory: /tmp/pip-wheel-e6yzevnx
2020-09-12T02:41:41,848 1 location(s) to search for versions of oncodrivefml:
2020-09-12T02:41:41,848 * https://pypi.org/simple/oncodrivefml/
2020-09-12T02:41:41,849 Fetching project page and analyzing links: https://pypi.org/simple/oncodrivefml/
2020-09-12T02:41:41,851 Getting page https://pypi.org/simple/oncodrivefml/
2020-09-12T02:41:41,854 Found index url https://pypi.org/simple
2020-09-12T02:41:42,149   Found link https://files.pythonhosted.org/packages/db/67/1739dcef8c63626fda8b6a772cd8d82710adcf4e7a6dbb3185acb54af065/oncodrivefml-1.0.1.tar.gz#sha256=85568115bfa2ae7d1b77cd046fbcf97cd7fc26e3820611dff782ed96ef305161 (from https://pypi.org/simple/oncodrivefml/), version: 1.0.1
2020-09-12T02:41:42,151   Found link https://files.pythonhosted.org/packages/4c/5d/8770a0cf7425743d3b67ea91207dfc619f7a0826df1f82aac907388a9709/oncodrivefml-2.0.1.tar.gz#sha256=02cf92cea9d9bc0b7cdc8a2365a16d3d11b8dc829193bd31254831616064d5a9 (from https://pypi.org/simple/oncodrivefml/), version: 2.0.1
2020-09-12T02:41:42,151   Found link https://files.pythonhosted.org/packages/37/ec/1b093916cb9c9ba337fa9ae09a5d828e797f40e41050d1cbb59cf6eecdae/oncodrivefml-2.0.2.tar.gz#sha256=7b7ba10f48efeafe259627f2f1d0400189e23c3ef805c306679d014b6eac411f (from https://pypi.org/simple/oncodrivefml/), version: 2.0.2
2020-09-12T02:41:42,152   Found link https://files.pythonhosted.org/packages/ba/c9/edbcf5450123b824ca838b5c72d4a799fe87800a2f425eddd816f3460596/oncodrivefml-2.0.3.tar.gz#sha256=b2c1571bc9ae0d0cf17c725479a5197f2ea227a5fdc700d9576264d50e6f23f0 (from https://pypi.org/simple/oncodrivefml/), version: 2.0.3
2020-09-12T02:41:42,153   Found link https://files.pythonhosted.org/packages/ba/68/07a64ac621ccc248d4c8d2757cfb15c847ee2bc4e061a74b0e669698ba93/oncodrivefml-2.1.2.tar.gz#sha256=198b891604b2ff000fc973a779a89648957599ecdcccaefbacf9225f575c988a (from https://pypi.org/simple/oncodrivefml/), version: 2.1.2
2020-09-12T02:41:42,154   Found link https://files.pythonhosted.org/packages/68/6c/c86613b66f24ab8ff575c270865e9bf6fdd167bc52570c42a0114c72f65e/oncodrivefml-2.1.3.tar.gz#sha256=beba29277206e276b8d5face41e0b916c4b2089ef7a6bb707f0983b7eb2cf0a1 (from https://pypi.org/simple/oncodrivefml/), version: 2.1.3
2020-09-12T02:41:42,155   Found link https://files.pythonhosted.org/packages/27/6c/5b59d3c305a25b56ec31627ba1c5fbbebe98525ffd68a242b20d448e92b6/oncodrivefml-2.2.0.tar.gz#sha256=62c63c09424e4992c3d501b81a62fa496ae96ceae5f5358636f414d2eb55ac3f (from https://pypi.org/simple/oncodrivefml/), version: 2.2.0
2020-09-12T02:41:42,155   Found link https://files.pythonhosted.org/packages/05/ae/a3359962a4ff891c830429f227d49514374de04b06435fc4b9bd7f68620b/oncodrivefml-2.3.0.tar.gz#sha256=9ef35231696a9b01867d3b89a94b9d93d16b75357497dd17544a1670b44449f9 (from https://pypi.org/simple/oncodrivefml/), version: 2.3.0
2020-09-12T02:41:42,166 Given no hashes to check 1 links for project 'oncodrivefml': discarding no candidates
2020-09-12T02:41:42,167 Using version 2.1.3 (newest of versions: 2.1.3)
2020-09-12T02:41:42,174 Collecting oncodrivefml==2.1.3
2020-09-12T02:41:42,179   Created temporary directory: /tmp/pip-unpack-xqi_r22v
2020-09-12T02:41:42,659   Downloading oncodrivefml-2.1.3.tar.gz (609 kB)
2020-09-12T02:41:42,942   Added oncodrivefml==2.1.3 from https://files.pythonhosted.org/packages/68/6c/c86613b66f24ab8ff575c270865e9bf6fdd167bc52570c42a0114c72f65e/oncodrivefml-2.1.3.tar.gz#sha256=beba29277206e276b8d5face41e0b916c4b2089ef7a6bb707f0983b7eb2cf0a1 to build tracker '/tmp/pip-req-tracker-4v52h1jl'
2020-09-12T02:41:42,944     Running setup.py (path:/tmp/pip-wheel-e6yzevnx/oncodrivefml/setup.py) egg_info for package oncodrivefml
2020-09-12T02:41:42,946     Created temporary directory: /tmp/pip-pip-egg-info-4f6uts2v
2020-09-12T02:41:42,946     Running command python setup.py egg_info
2020-09-12T02:41:44,875     running egg_info
2020-09-12T02:41:44,881     creating /tmp/pip-pip-egg-info-4f6uts2v/oncodrivefml.egg-info
2020-09-12T02:41:44,883     writing entry points to /tmp/pip-pip-egg-info-4f6uts2v/oncodrivefml.egg-info/entry_points.txt
2020-09-12T02:41:44,885     writing dependency_links to /tmp/pip-pip-egg-info-4f6uts2v/oncodrivefml.egg-info/dependency_links.txt
2020-09-12T02:41:44,886     writing top-level names to /tmp/pip-pip-egg-info-4f6uts2v/oncodrivefml.egg-info/top_level.txt
2020-09-12T02:41:44,889     writing /tmp/pip-pip-egg-info-4f6uts2v/oncodrivefml.egg-info/PKG-INFO
2020-09-12T02:41:44,892     writing requirements to /tmp/pip-pip-egg-info-4f6uts2v/oncodrivefml.egg-info/requires.txt
2020-09-12T02:41:44,896     writing manifest file '/tmp/pip-pip-egg-info-4f6uts2v/oncodrivefml.egg-info/SOURCES.txt'
2020-09-12T02:41:45,576     reading manifest file '/tmp/pip-pip-egg-info-4f6uts2v/oncodrivefml.egg-info/SOURCES.txt'
2020-09-12T02:41:45,578     reading manifest template 'MANIFEST.in'
2020-09-12T02:41:45,581     warning: no previously-included files matching '*.c' found anywhere in distribution
2020-09-12T02:41:45,582     warning: no previously-included files matching '*.so' found anywhere in distribution
2020-09-12T02:41:45,588     writing manifest file '/tmp/pip-pip-egg-info-4f6uts2v/oncodrivefml.egg-info/SOURCES.txt'
2020-09-12T02:41:45,735   Source in /tmp/pip-wheel-e6yzevnx/oncodrivefml has version 2.1.3, which satisfies requirement oncodrivefml==2.1.3 from https://files.pythonhosted.org/packages/68/6c/c86613b66f24ab8ff575c270865e9bf6fdd167bc52570c42a0114c72f65e/oncodrivefml-2.1.3.tar.gz#sha256=beba29277206e276b8d5face41e0b916c4b2089ef7a6bb707f0983b7eb2cf0a1
2020-09-12T02:41:45,737   Removed oncodrivefml==2.1.3 from https://files.pythonhosted.org/packages/68/6c/c86613b66f24ab8ff575c270865e9bf6fdd167bc52570c42a0114c72f65e/oncodrivefml-2.1.3.tar.gz#sha256=beba29277206e276b8d5face41e0b916c4b2089ef7a6bb707f0983b7eb2cf0a1 from build tracker '/tmp/pip-req-tracker-4v52h1jl'
2020-09-12T02:41:45,740 Building wheels for collected packages: oncodrivefml
2020-09-12T02:41:45,747   Created temporary directory: /tmp/pip-wheel-9ny7e99a
2020-09-12T02:41:45,748   Building wheel for oncodrivefml (setup.py): started
2020-09-12T02:41:45,748   Destination directory: /tmp/pip-wheel-9ny7e99a
2020-09-12T02:41:45,749   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-e6yzevnx/oncodrivefml/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-e6yzevnx/oncodrivefml/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-9ny7e99a
2020-09-12T02:41:47,672   running bdist_wheel
2020-09-12T02:41:47,685   running build
2020-09-12T02:41:47,686   running build_py
2020-09-12T02:41:47,979   creating build
2020-09-12T02:41:47,980   creating build/lib.linux-armv7l-3.5
2020-09-12T02:41:47,981   creating build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:41:47,984   copying oncodrivefml/walker.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:41:47,989   copying oncodrivefml/config.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:41:47,993   copying oncodrivefml/stats.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:41:47,998   copying oncodrivefml/mtc.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:41:48,004   copying oncodrivefml/store.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:41:48,012   copying oncodrivefml/oncodrivefml.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:41:48,018   copying oncodrivefml/scores.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:41:48,023   copying oncodrivefml/indels.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:41:48,028   copying oncodrivefml/signature.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:41:48,033   copying oncodrivefml/__init__.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:41:48,037   copying oncodrivefml/load.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:41:48,044   copying oncodrivefml/main.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:41:48,050   copying oncodrivefml/utils.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:41:48,055   copying oncodrivefml/compute.py -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:41:48,060   creating build/lib.linux-armv7l-3.5/oncodrivefml/executors
2020-09-12T02:41:48,062   copying oncodrivefml/executors/element.py -> build/lib.linux-armv7l-3.5/oncodrivefml/executors
2020-09-12T02:41:48,067   copying oncodrivefml/executors/bysample.py -> build/lib.linux-armv7l-3.5/oncodrivefml/executors
2020-09-12T02:41:48,070   copying oncodrivefml/executors/__init__.py -> build/lib.linux-armv7l-3.5/oncodrivefml/executors
2020-09-12T02:41:48,073   copying oncodrivefml/executors/bymutation.py -> build/lib.linux-armv7l-3.5/oncodrivefml/executors
2020-09-12T02:41:48,083   copying oncodrivefml/ensembl_genes_75.txt.gz -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:41:48,115   copying oncodrivefml/oncodrivefml_v2.conf.template -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:41:48,121   copying oncodrivefml/oncodrivefml_v2.conf.template.spec -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:41:48,124   copying oncodrivefml/walker_cython.pyx -> build/lib.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:41:48,131   running build_ext
2020-09-12T02:41:48,492   cythoning oncodrivefml/walker_cython.pyx to oncodrivefml/walker_cython.c
2020-09-12T02:41:50,351   /usr/local/lib/python3.5/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-e6yzevnx/oncodrivefml/oncodrivefml/walker_cython.pyx
2020-09-12T02:41:50,352     tree = Parsing.p_module(s, pxd, full_module_name)
2020-09-12T02:41:56,228   building 'oncodrivefml.walker_cython' extension
2020-09-12T02:41:56,230   creating build/temp.linux-armv7l-3.5
2020-09-12T02:41:56,232   creating build/temp.linux-armv7l-3.5/oncodrivefml
2020-09-12T02:41:56,234   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c oncodrivefml/walker_cython.c -o build/temp.linux-armv7l-3.5/oncodrivefml/walker_cython.o
2020-09-12T02:42:13,607   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/oncodrivefml/walker_cython.o -o build/lib.linux-armv7l-3.5/oncodrivefml/walker_cython.cpython-35m-arm-linux-gnueabihf.so
2020-09-12T02:42:13,856   installing to build/bdist.linux-armv7l/wheel
2020-09-12T02:42:13,857   running install
2020-09-12T02:42:13,860   running install_lib
2020-09-12T02:42:13,872   creating build/bdist.linux-armv7l
2020-09-12T02:42:13,873   creating build/bdist.linux-armv7l/wheel
2020-09-12T02:42:13,876   creating build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:42:13,877   copying build/lib.linux-armv7l-3.5/oncodrivefml/walker.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:42:13,882   creating build/bdist.linux-armv7l/wheel/oncodrivefml/executors
2020-09-12T02:42:13,883   copying build/lib.linux-armv7l-3.5/oncodrivefml/executors/element.py -> build/bdist.linux-armv7l/wheel/oncodrivefml/executors
2020-09-12T02:42:13,888   copying build/lib.linux-armv7l-3.5/oncodrivefml/executors/bysample.py -> build/bdist.linux-armv7l/wheel/oncodrivefml/executors
2020-09-12T02:42:13,892   copying build/lib.linux-armv7l-3.5/oncodrivefml/executors/__init__.py -> build/bdist.linux-armv7l/wheel/oncodrivefml/executors
2020-09-12T02:42:13,897   copying build/lib.linux-armv7l-3.5/oncodrivefml/executors/bymutation.py -> build/bdist.linux-armv7l/wheel/oncodrivefml/executors
2020-09-12T02:42:13,902   copying build/lib.linux-armv7l-3.5/oncodrivefml/config.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:42:13,906   copying build/lib.linux-armv7l-3.5/oncodrivefml/ensembl_genes_75.txt.gz -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:42:13,938   copying build/lib.linux-armv7l-3.5/oncodrivefml/stats.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:42:13,941   copying build/lib.linux-armv7l-3.5/oncodrivefml/mtc.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:42:13,945   copying build/lib.linux-armv7l-3.5/oncodrivefml/store.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:42:13,949   copying build/lib.linux-armv7l-3.5/oncodrivefml/oncodrivefml.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:42:13,953   copying build/lib.linux-armv7l-3.5/oncodrivefml/oncodrivefml_v2.conf.template -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:42:13,958   copying build/lib.linux-armv7l-3.5/oncodrivefml/scores.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:42:13,964   copying build/lib.linux-armv7l-3.5/oncodrivefml/indels.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:42:13,970   copying build/lib.linux-armv7l-3.5/oncodrivefml/signature.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:42:13,976   copying build/lib.linux-armv7l-3.5/oncodrivefml/__init__.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:42:13,979   copying build/lib.linux-armv7l-3.5/oncodrivefml/walker_cython.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:42:14,007   copying build/lib.linux-armv7l-3.5/oncodrivefml/load.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:42:14,011   copying build/lib.linux-armv7l-3.5/oncodrivefml/main.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:42:14,014   copying build/lib.linux-armv7l-3.5/oncodrivefml/walker_cython.pyx -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:42:14,019   copying build/lib.linux-armv7l-3.5/oncodrivefml/oncodrivefml_v2.conf.template.spec -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:42:14,024   copying build/lib.linux-armv7l-3.5/oncodrivefml/utils.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:42:14,029   copying build/lib.linux-armv7l-3.5/oncodrivefml/compute.py -> build/bdist.linux-armv7l/wheel/oncodrivefml
2020-09-12T02:42:14,033   running install_egg_info
2020-09-12T02:42:14,073   running egg_info
2020-09-12T02:42:14,074   writing dependency_links to oncodrivefml.egg-info/dependency_links.txt
2020-09-12T02:42:14,077   writing requirements to oncodrivefml.egg-info/requires.txt
2020-09-12T02:42:14,078   writing oncodrivefml.egg-info/PKG-INFO
2020-09-12T02:42:14,082   writing top-level names to oncodrivefml.egg-info/top_level.txt
2020-09-12T02:42:14,083   writing entry points to oncodrivefml.egg-info/entry_points.txt
2020-09-12T02:42:14,097   reading manifest file 'oncodrivefml.egg-info/SOURCES.txt'
2020-09-12T02:42:14,101   reading manifest template 'MANIFEST.in'
2020-09-12T02:42:14,106   warning: no previously-included files matching '*.so' found anywhere in distribution
2020-09-12T02:42:14,113   writing manifest file 'oncodrivefml.egg-info/SOURCES.txt'
2020-09-12T02:42:14,115   Copying oncodrivefml.egg-info to build/bdist.linux-armv7l/wheel/oncodrivefml-2.1.3-py3.5.egg-info
2020-09-12T02:42:14,135   running install_scripts
2020-09-12T02:42:14,274   creating build/bdist.linux-armv7l/wheel/oncodrivefml-2.1.3.dist-info/WHEEL
2020-09-12T02:42:15,315   Building wheel for oncodrivefml (setup.py): finished with status 'done'
2020-09-12T02:42:15,331   Created wheel for oncodrivefml: filename=oncodrivefml-2.1.3-cp35-cp35m-linux_armv7l.whl size=839004 sha256=46dfdcff25a6a6c9dd2434b7def58a74b25a58e12ee49e0503aac5ccad01da0a
2020-09-12T02:42:15,331   Stored in directory: /tmp/pip-ephem-wheel-cache-tutb4c4z/wheels/da/34/05/ac45c7dfb00fe2d12f9ccf5007754c7cca9a2821e56fab0dff
2020-09-12T02:42:15,335 Successfully built oncodrivefml
2020-09-12T02:42:16,009 Removed build tracker: '/tmp/pip-req-tracker-4v52h1jl'