2020-09-12T05:02:49,958 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-09-12T05:02:50,616 Created temporary directory: /tmp/pip-ephem-wheel-cache-zhcs4gcg
2020-09-12T05:02:50,621 Created temporary directory: /tmp/pip-req-tracker-ivaub_8v
2020-09-12T05:02:50,622 Initialized build tracking at /tmp/pip-req-tracker-ivaub_8v
2020-09-12T05:02:50,622 Created build tracker: /tmp/pip-req-tracker-ivaub_8v
2020-09-12T05:02:50,622 Entered build tracker: /tmp/pip-req-tracker-ivaub_8v
2020-09-12T05:02:50,624 Created temporary directory: /tmp/pip-wheel-utf5bimj
2020-09-12T05:02:50,641 1 location(s) to search for versions of gffutils:
2020-09-12T05:02:50,641 * https://pypi.org/simple/gffutils/
2020-09-12T05:02:50,641 Fetching project page and analyzing links: https://pypi.org/simple/gffutils/
2020-09-12T05:02:50,643 Getting page https://pypi.org/simple/gffutils/
2020-09-12T05:02:50,648 Found index url https://pypi.org/simple
2020-09-12T05:02:50,983   Found link https://files.pythonhosted.org/packages/d9/a5/3d6f46b049c1091efcc6f6d29e9d39470f5f8d62e17cdb6fd331526fd71b/gffutils-0.0.0.tar.gz#sha256=e02b331fdfcbc6095b53126281c7591fc82bdd44ebedee4b6bff4910e8e29883 (from https://pypi.org/simple/gffutils/), version: 0.0.0
2020-09-12T05:02:50,984   Found link https://files.pythonhosted.org/packages/86/64/6dab23af4bfb4052c66a8f1f174c95d59f8e797220bfe19dfd11122538d9/gffutils-0.7.tar.gz#sha256=1e03365ed45a1dafb8ff750a562930872dc09cdd86603e3f34c81a4183571546 (from https://pypi.org/simple/gffutils/), version: 0.7
2020-09-12T05:02:50,985   Found link https://files.pythonhosted.org/packages/f9/6a/b2cf512d0772c220431fbab8465abdb2d730bd6ac22a6816e023afa675b8/gffutils-0.8.tar.gz#sha256=5eda5e365352b3c7f84fe6cff4b4f69a2c8d7ba6ea5403d53e1bb7718cd3c13f (from https://pypi.org/simple/gffutils/), version: 0.8
2020-09-12T05:02:50,986   Found link https://files.pythonhosted.org/packages/07/52/5d10ce38562ed0b8468697e09f8898b45df543d5e9fe5b6c5a4a5aca6685/gffutils-0.8.1.tar.gz#sha256=1994525e35cbf32d1a5679e9bf708b84778fb760d7889c917dd7cb571bb06ff4 (from https://pypi.org/simple/gffutils/), version: 0.8.1
2020-09-12T05:02:50,987   Found link https://files.pythonhosted.org/packages/eb/89/e2e0c90b9be07b3ab650b7474971fbf0b1e5d4d29a2b03c676ffad9501bb/gffutils-0.8.2.tar.gz#sha256=fc85976687bb8ff6742daebd7e3d3fcbf47bfda4ab8ef7e02c8b155b733ba8ac (from https://pypi.org/simple/gffutils/), version: 0.8.2
2020-09-12T05:02:50,988   Found link https://files.pythonhosted.org/packages/3e/2b/1a5d72b043c024b86d573ceab15b464acd0638b912cd30ddce71e7d93112/gffutils-0.8.3.tar.gz#sha256=9f28733ed6f9603817691c0ac14078792f7f853054ee90bc401320a495d218f2 (from https://pypi.org/simple/gffutils/), version: 0.8.3
2020-09-12T05:02:50,989   Found link https://files.pythonhosted.org/packages/8d/00/6f4f59d109bbc421ad59faf64eb31cb90858a4a316c31eb49e09467f4a93/gffutils-0.8.3.1.tar.gz#sha256=6939ff831bb2e6a33a2c99d4c57ce64b1c517ca56be3014b4171d45a86964508 (from https://pypi.org/simple/gffutils/), version: 0.8.3.1
2020-09-12T05:02:50,990   Found link https://files.pythonhosted.org/packages/d8/a3/487db49cf8b35dd17d6360f464d3524b369365e5bd7964ac32b33a6fabab/gffutils-0.8.4rc1.tar.gz#sha256=63d3ec216bb395ff8d9f9033f8aa83f82130e4ef229273e37beb1034580da666 (from https://pypi.org/simple/gffutils/), version: 0.8.4rc1
2020-09-12T05:02:50,990   Found link https://files.pythonhosted.org/packages/25/9d/97c58a9a602e41e2797747fd94b6bd4aa82331178a074c4da966030045ba/gffutils-0.8.5.tar.gz#sha256=c5acd59c55662fe082fa78bc5d5ae383e73040f7610ef8d45b8bd62d9fae74d8 (from https://pypi.org/simple/gffutils/), version: 0.8.5
2020-09-12T05:02:50,991   Found link https://files.pythonhosted.org/packages/21/b1/0ecce3b0304048241da7e830196aa50d62dfe9c9bdbf4fb48aebbf1d363e/gffutils-0.8.6.tar.gz#sha256=6cdfb77b57ef22b5971e5d876bcc89e05a5e6194589d1e283b5e9d6df83fff46 (from https://pypi.org/simple/gffutils/), version: 0.8.6
2020-09-12T05:02:50,992   Found link https://files.pythonhosted.org/packages/40/bc/85541d291c6da6570deed2988206bb322afb8d5ede1e72fd267c440a286d/gffutils-0.8.6.1.tar.gz#sha256=e421a06ef916041946f6b1dc3ae85776524c6bc3578bdbdda5f7e98d8a3d8db4 (from https://pypi.org/simple/gffutils/), version: 0.8.6.1
2020-09-12T05:02:50,993   Found link https://files.pythonhosted.org/packages/d8/bf/b630f9a006d7380d79b344b41af548c73371844737f221a9d4a59d57f91e/gffutils-0.8.7.tar.gz#sha256=4fb2c95dbf7f98e537d00995eb7aa6bf36ee70fd9a707aa3df2202c898d54c01 (from https://pypi.org/simple/gffutils/), version: 0.8.7
2020-09-12T05:02:50,994   Found link https://files.pythonhosted.org/packages/a7/fa/3d8cd13f58540098f5efb3ec7dd33d1bb6a27ee06e377e1d6a2419b4be25/gffutils-0.8.7.1.tar.gz#sha256=0fd612cdf37b9aeb0d3504bd45acde1b00574554b84095a683688595337e94e6 (from https://pypi.org/simple/gffutils/), version: 0.8.7.1
2020-09-12T05:02:50,995   Found link https://files.pythonhosted.org/packages/b4/ea/54ca403a8d471849606fb432b9afcf73c8c5105ea2dd87b8d38bd5217c5a/gffutils-0.9.tar.gz#sha256=e1b0bf2b422ec3491be13d77bf7baf71d274abd844e8f8b6c1217a95b236218b (from https://pypi.org/simple/gffutils/), version: 0.9
2020-09-12T05:02:50,996   Found link https://files.pythonhosted.org/packages/f0/cb/bbbde7e179aa5efe13f51afbef13a85a53632d94fc97755a2819d4d251c6/gffutils-0.10.tar.gz#sha256=9b1f5f30d93754e8c67503b94878dbd7d113a5acf8d04c4c363aa8a78a506b2d (from https://pypi.org/simple/gffutils/), version: 0.10
2020-09-12T05:02:50,997   Found link https://files.pythonhosted.org/packages/87/d6/f893f14fd6cf1c9e758259f6e0f9ba1ae03370988d8f1a3ea8d790ca5b06/gffutils-0.10.1.tar.gz#sha256=a8fc39006d7aa353147238160640e2210b168f7849cb99896be3fc9441e351cb (from https://pypi.org/simple/gffutils/), version: 0.10.1
2020-09-12T05:02:51,012 Given no hashes to check 1 links for project 'gffutils': discarding no candidates
2020-09-12T05:02:51,014 Using version 0.10 (newest of versions: 0.10)
2020-09-12T05:02:51,023 Collecting gffutils==0.10
2020-09-12T05:02:51,028   Created temporary directory: /tmp/pip-unpack-klnkip0j
2020-09-12T05:02:51,409   Downloading gffutils-0.10.tar.gz (1.5 MB)
2020-09-12T05:02:53,513   Added gffutils==0.10 from https://files.pythonhosted.org/packages/f0/cb/bbbde7e179aa5efe13f51afbef13a85a53632d94fc97755a2819d4d251c6/gffutils-0.10.tar.gz#sha256=9b1f5f30d93754e8c67503b94878dbd7d113a5acf8d04c4c363aa8a78a506b2d to build tracker '/tmp/pip-req-tracker-ivaub_8v'
2020-09-12T05:02:53,517     Running setup.py (path:/tmp/pip-wheel-utf5bimj/gffutils/setup.py) egg_info for package gffutils
2020-09-12T05:02:53,519     Created temporary directory: /tmp/pip-pip-egg-info-w2or3ra8
2020-09-12T05:02:53,520     Running command python setup.py egg_info
2020-09-12T05:02:55,579     running egg_info
2020-09-12T05:02:55,586     creating /tmp/pip-pip-egg-info-w2or3ra8/gffutils.egg-info
2020-09-12T05:02:55,588     writing dependency_links to /tmp/pip-pip-egg-info-w2or3ra8/gffutils.egg-info/dependency_links.txt
2020-09-12T05:02:55,592     writing requirements to /tmp/pip-pip-egg-info-w2or3ra8/gffutils.egg-info/requires.txt
2020-09-12T05:02:55,595     writing /tmp/pip-pip-egg-info-w2or3ra8/gffutils.egg-info/PKG-INFO
2020-09-12T05:02:55,601     writing top-level names to /tmp/pip-pip-egg-info-w2or3ra8/gffutils.egg-info/top_level.txt
2020-09-12T05:02:55,605     writing manifest file '/tmp/pip-pip-egg-info-w2or3ra8/gffutils.egg-info/SOURCES.txt'
2020-09-12T05:02:55,952     package init file 'gffutils/scripts/__init__.py' not found (or not a regular file)
2020-09-12T05:02:55,958     package init file 'gffutils/test/data/__init__.py' not found (or not a regular file)
2020-09-12T05:02:55,985     reading manifest file '/tmp/pip-pip-egg-info-w2or3ra8/gffutils.egg-info/SOURCES.txt'
2020-09-12T05:02:55,988     reading manifest template 'MANIFEST.in'
2020-09-12T05:02:55,991     warning: no files found matching '*.rst' under directory 'docs/source'
2020-09-12T05:02:55,992     warning: no files found matching '*.py' under directory 'docs/source'
2020-09-12T05:02:55,992     warning: no files found matching '*' under directory 'docs/source/images'
2020-09-12T05:02:55,995     warning: no files found matching 'docs/Makefile'
2020-09-12T05:02:55,996     warning: no files found matching 'docs/make.bat'
2020-09-12T05:02:55,998     warning: no files found matching 'gffutils/test/data/__init__.py'
2020-09-12T05:02:56,000     warning: no files found matching 'gffutils/test/data/t.py'
2020-09-12T05:02:56,012     writing manifest file '/tmp/pip-pip-egg-info-w2or3ra8/gffutils.egg-info/SOURCES.txt'
2020-09-12T05:02:56,147   Source in /tmp/pip-wheel-utf5bimj/gffutils has version 0.10, which satisfies requirement gffutils==0.10 from https://files.pythonhosted.org/packages/f0/cb/bbbde7e179aa5efe13f51afbef13a85a53632d94fc97755a2819d4d251c6/gffutils-0.10.tar.gz#sha256=9b1f5f30d93754e8c67503b94878dbd7d113a5acf8d04c4c363aa8a78a506b2d
2020-09-12T05:02:56,149   Removed gffutils==0.10 from https://files.pythonhosted.org/packages/f0/cb/bbbde7e179aa5efe13f51afbef13a85a53632d94fc97755a2819d4d251c6/gffutils-0.10.tar.gz#sha256=9b1f5f30d93754e8c67503b94878dbd7d113a5acf8d04c4c363aa8a78a506b2d from build tracker '/tmp/pip-req-tracker-ivaub_8v'
2020-09-12T05:02:56,152 Building wheels for collected packages: gffutils
2020-09-12T05:02:56,161   Created temporary directory: /tmp/pip-wheel-7r6s_4ou
2020-09-12T05:02:56,162   Building wheel for gffutils (setup.py): started
2020-09-12T05:02:56,163   Destination directory: /tmp/pip-wheel-7r6s_4ou
2020-09-12T05:02:56,163   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-utf5bimj/gffutils/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-utf5bimj/gffutils/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-7r6s_4ou
2020-09-12T05:02:58,340   running bdist_wheel
2020-09-12T05:02:58,355   running build
2020-09-12T05:02:58,355   running build_py
2020-09-12T05:02:58,693   creating build
2020-09-12T05:02:58,694   creating build/lib
2020-09-12T05:02:58,696   creating build/lib/gffutils
2020-09-12T05:02:58,699   copying gffutils/__init__.py -> build/lib/gffutils
2020-09-12T05:02:58,703   copying gffutils/helpers.py -> build/lib/gffutils
2020-09-12T05:02:58,709   copying gffutils/biopython_integration.py -> build/lib/gffutils
2020-09-12T05:02:58,713   copying gffutils/bins.py -> build/lib/gffutils
2020-09-12T05:02:58,719   copying gffutils/feature.py -> build/lib/gffutils
2020-09-12T05:02:58,726   copying gffutils/gffwriter.py -> build/lib/gffutils
2020-09-12T05:02:58,732   copying gffutils/attributes.py -> build/lib/gffutils
2020-09-12T05:02:58,738   copying gffutils/version.py -> build/lib/gffutils
2020-09-12T05:02:58,743   copying gffutils/iterators.py -> build/lib/gffutils
2020-09-12T05:02:58,750   copying gffutils/inspect.py -> build/lib/gffutils
2020-09-12T05:02:58,755   copying gffutils/convert.py -> build/lib/gffutils
2020-09-12T05:02:58,761   copying gffutils/constants.py -> build/lib/gffutils
2020-09-12T05:02:58,766   copying gffutils/merge_criteria.py -> build/lib/gffutils
2020-09-12T05:02:58,771   copying gffutils/interface.py -> build/lib/gffutils
2020-09-12T05:02:58,783   copying gffutils/exceptions.py -> build/lib/gffutils
2020-09-12T05:02:58,788   copying gffutils/parser.py -> build/lib/gffutils
2020-09-12T05:02:58,795   copying gffutils/create.py -> build/lib/gffutils
2020-09-12T05:02:58,806   copying gffutils/pybedtools_integration.py -> build/lib/gffutils
2020-09-12T05:02:58,812   package init file 'gffutils/scripts/__init__.py' not found (or not a regular file)
2020-09-12T05:02:58,815   creating build/lib/gffutils/scripts
2020-09-12T05:02:58,818   copying gffutils/scripts/gffutils-flybase-convert.py -> build/lib/gffutils/scripts
2020-09-12T05:02:58,829   creating build/lib/gffutils/test
2020-09-12T05:02:58,831   copying gffutils/test/__init__.py -> build/lib/gffutils/test
2020-09-12T05:02:58,836   copying gffutils/test/attr_test_cases.py -> build/lib/gffutils/test
2020-09-12T05:02:58,842   copying gffutils/test/parser_test.py -> build/lib/gffutils/test
2020-09-12T05:02:58,847   copying gffutils/test/performance_test.py -> build/lib/gffutils/test
2020-09-12T05:02:58,852   copying gffutils/test/helpers_test.py -> build/lib/gffutils/test
2020-09-12T05:02:58,857   copying gffutils/test/test_biopython_integration.py -> build/lib/gffutils/test
2020-09-12T05:02:58,861   copying gffutils/test/synth_test_base.py -> build/lib/gffutils/test
2020-09-12T05:02:58,866   copying gffutils/test/test.py -> build/lib/gffutils/test
2020-09-12T05:02:58,877   copying gffutils/test/feature_test.py -> build/lib/gffutils/test
2020-09-12T05:02:58,883   copying gffutils/test/test_merge.py -> build/lib/gffutils/test
2020-09-12T05:02:58,889   copying gffutils/test/test_merge_all.py -> build/lib/gffutils/test
2020-09-12T05:02:58,895   copying gffutils/test/expected.py -> build/lib/gffutils/test
2020-09-12T05:02:58,901   package init file 'gffutils/test/data/__init__.py' not found (or not a regular file)
2020-09-12T05:02:58,923   creating build/lib/gffutils/test/data
2020-09-12T05:02:58,925   copying gffutils/test/data/download-large-annotation-files.sh -> build/lib/gffutils/test/data
2020-09-12T05:02:58,930   copying gffutils/test/data/gencode-v19.gtf -> build/lib/gffutils/test/data
2020-09-12T05:02:58,937   copying gffutils/test/data/keep-order-test.gtf -> build/lib/gffutils/test/data
2020-09-12T05:02:58,942   copying gffutils/test/data/synthetic.gff3 -> build/lib/gffutils/test/data
2020-09-12T05:02:58,949   copying gffutils/test/data/random-chr.gff -> build/lib/gffutils/test/data
2020-09-12T05:02:58,955   copying gffutils/test/data/hybrid1.gff3 -> build/lib/gffutils/test/data
2020-09-12T05:02:58,963   copying gffutils/test/data/dm6-chr2L.fa -> build/lib/gffutils/test/data
2020-09-12T05:02:58,970   copying gffutils/test/data/jgi_gff2.txt -> build/lib/gffutils/test/data
2020-09-12T05:02:58,977   copying gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> build/lib/gffutils/test/data
2020-09-12T05:02:58,993   copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> build/lib/gffutils/test/data
2020-09-12T05:02:59,009   copying gffutils/test/data/F3-unique-3.v2.gff -> build/lib/gffutils/test/data
2020-09-12T05:02:59,018   copying gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> build/lib/gffutils/test/data
2020-09-12T05:02:59,035   copying gffutils/test/data/intro_docs_example.gff -> build/lib/gffutils/test/data
2020-09-12T05:02:59,040   copying gffutils/test/data/FBgn0031208.gff -> build/lib/gffutils/test/data
2020-09-12T05:02:59,047   copying gffutils/test/data/ncbi_gff3.txt -> build/lib/gffutils/test/data
2020-09-12T05:02:59,055   copying gffutils/test/data/wormbase_gff2_alt.txt -> build/lib/gffutils/test/data
2020-09-12T05:02:59,062   copying gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> build/lib/gffutils/test/data
2020-09-12T05:02:59,071   copying gffutils/test/data/keyval_sep_in_attrs.gff -> build/lib/gffutils/test/data
2020-09-12T05:02:59,078   copying gffutils/test/data/c_elegans_WS199_ann_gff.txt -> build/lib/gffutils/test/data
2020-09-12T05:02:59,085   copying gffutils/test/data/gencode.vM8.chromsizes.txt -> build/lib/gffutils/test/data
2020-09-12T05:02:59,092   copying gffutils/test/data/FBgn0031208.gtf -> build/lib/gffutils/test/data
2020-09-12T05:02:59,100   copying gffutils/test/data/glimmer_nokeyval.gff3 -> build/lib/gffutils/test/data
2020-09-12T05:02:59,107   copying gffutils/test/data/ensembl_gtf.txt -> build/lib/gffutils/test/data
2020-09-12T05:02:59,115   copying gffutils/test/data/mouse_extra_comma.gff3 -> build/lib/gffutils/test/data
2020-09-12T05:02:59,122   copying gffutils/test/data/gff_example1.gff3 -> build/lib/gffutils/test/data
2020-09-12T05:02:59,129   copying gffutils/test/data/unsanitized.gff -> build/lib/gffutils/test/data
2020-09-12T05:02:59,135   copying gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> build/lib/gffutils/test/data
2020-09-12T05:02:59,142   copying gffutils/test/data/nonascii -> build/lib/gffutils/test/data
2020-09-12T05:02:59,151   copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> build/lib/gffutils/test/data
2020-09-12T05:02:59,165   copying gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> build/lib/gffutils/test/data
2020-09-12T05:03:00,002   copying gffutils/test/data/wormbase_gff2.txt -> build/lib/gffutils/test/data
2020-09-12T05:03:00,010   copying gffutils/test/data/gff_example1.gff3.gz -> build/lib/gffutils/test/data
2020-09-12T05:03:00,017   copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> build/lib/gffutils/test/data
2020-09-12T05:03:00,033   running build_scripts
2020-09-12T05:03:00,034   creating build/scripts-3.5
2020-09-12T05:03:00,037   copying and adjusting gffutils/scripts/gffutils-cli -> build/scripts-3.5
2020-09-12T05:03:00,042   changing mode of build/scripts-3.5/gffutils-cli from 644 to 755
2020-09-12T05:03:00,048   installing to build/bdist.linux-armv7l/wheel
2020-09-12T05:03:00,049   running install
2020-09-12T05:03:00,051   running install_lib
2020-09-12T05:03:00,059   creating build/bdist.linux-armv7l
2020-09-12T05:03:00,060   creating build/bdist.linux-armv7l/wheel
2020-09-12T05:03:00,064   creating build/bdist.linux-armv7l/wheel/gffutils
2020-09-12T05:03:00,066   copying build/lib/gffutils/__init__.py -> build/bdist.linux-armv7l/wheel/gffutils
2020-09-12T05:03:00,071   copying build/lib/gffutils/helpers.py -> build/bdist.linux-armv7l/wheel/gffutils
2020-09-12T05:03:00,077   copying build/lib/gffutils/biopython_integration.py -> build/bdist.linux-armv7l/wheel/gffutils
2020-09-12T05:03:00,081   copying build/lib/gffutils/bins.py -> build/bdist.linux-armv7l/wheel/gffutils
2020-09-12T05:03:00,087   copying build/lib/gffutils/feature.py -> build/bdist.linux-armv7l/wheel/gffutils
2020-09-12T05:03:00,094   copying build/lib/gffutils/gffwriter.py -> build/bdist.linux-armv7l/wheel/gffutils
2020-09-12T05:03:00,101   copying build/lib/gffutils/attributes.py -> build/bdist.linux-armv7l/wheel/gffutils
2020-09-12T05:03:00,106   copying build/lib/gffutils/version.py -> build/bdist.linux-armv7l/wheel/gffutils
2020-09-12T05:03:00,112   copying build/lib/gffutils/iterators.py -> build/bdist.linux-armv7l/wheel/gffutils
2020-09-12T05:03:00,119   copying build/lib/gffutils/inspect.py -> build/bdist.linux-armv7l/wheel/gffutils
2020-09-12T05:03:00,127   creating build/bdist.linux-armv7l/wheel/gffutils/test
2020-09-12T05:03:00,130   copying build/lib/gffutils/test/__init__.py -> build/bdist.linux-armv7l/wheel/gffutils/test
2020-09-12T05:03:00,135   copying build/lib/gffutils/test/attr_test_cases.py -> build/bdist.linux-armv7l/wheel/gffutils/test
2020-09-12T05:03:00,145   creating build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:00,148   copying build/lib/gffutils/test/data/download-large-annotation-files.sh -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:00,154   copying build/lib/gffutils/test/data/gencode-v19.gtf -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:00,161   copying build/lib/gffutils/test/data/keep-order-test.gtf -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:00,166   copying build/lib/gffutils/test/data/synthetic.gff3 -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:00,172   copying build/lib/gffutils/test/data/random-chr.gff -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:00,178   copying build/lib/gffutils/test/data/hybrid1.gff3 -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:00,184   copying build/lib/gffutils/test/data/dm6-chr2L.fa -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:00,190   copying build/lib/gffutils/test/data/jgi_gff2.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:00,195   copying build/lib/gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:00,212   copying build/lib/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:00,227   copying build/lib/gffutils/test/data/F3-unique-3.v2.gff -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:00,235   copying build/lib/gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:00,251   copying build/lib/gffutils/test/data/intro_docs_example.gff -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:00,256   copying build/lib/gffutils/test/data/FBgn0031208.gff -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:00,261   copying build/lib/gffutils/test/data/ncbi_gff3.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:00,266   copying build/lib/gffutils/test/data/wormbase_gff2_alt.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:00,270   copying build/lib/gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:00,278   copying build/lib/gffutils/test/data/keyval_sep_in_attrs.gff -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:00,284   copying build/lib/gffutils/test/data/c_elegans_WS199_ann_gff.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:00,289   copying build/lib/gffutils/test/data/gencode.vM8.chromsizes.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:00,295   copying build/lib/gffutils/test/data/FBgn0031208.gtf -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:00,302   copying build/lib/gffutils/test/data/glimmer_nokeyval.gff3 -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:00,307   copying build/lib/gffutils/test/data/ensembl_gtf.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:00,314   copying build/lib/gffutils/test/data/mouse_extra_comma.gff3 -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:00,320   copying build/lib/gffutils/test/data/gff_example1.gff3 -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:00,326   copying build/lib/gffutils/test/data/unsanitized.gff -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:00,331   copying build/lib/gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:00,337   copying build/lib/gffutils/test/data/nonascii -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:00,344   copying build/lib/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:00,356   copying build/lib/gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:01,197   copying build/lib/gffutils/test/data/wormbase_gff2.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:01,202   copying build/lib/gffutils/test/data/gff_example1.gff3.gz -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:01,206   copying build/lib/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> build/bdist.linux-armv7l/wheel/gffutils/test/data
2020-09-12T05:03:01,210   copying build/lib/gffutils/test/parser_test.py -> build/bdist.linux-armv7l/wheel/gffutils/test
2020-09-12T05:03:01,216   copying build/lib/gffutils/test/performance_test.py -> build/bdist.linux-armv7l/wheel/gffutils/test
2020-09-12T05:03:01,226   copying build/lib/gffutils/test/helpers_test.py -> build/bdist.linux-armv7l/wheel/gffutils/test
2020-09-12T05:03:01,231   copying build/lib/gffutils/test/test_biopython_integration.py -> build/bdist.linux-armv7l/wheel/gffutils/test
2020-09-12T05:03:01,236   copying build/lib/gffutils/test/synth_test_base.py -> build/bdist.linux-armv7l/wheel/gffutils/test
2020-09-12T05:03:01,242   copying build/lib/gffutils/test/test.py -> build/bdist.linux-armv7l/wheel/gffutils/test
2020-09-12T05:03:01,251   copying build/lib/gffutils/test/feature_test.py -> build/bdist.linux-armv7l/wheel/gffutils/test
2020-09-12T05:03:01,260   copying build/lib/gffutils/test/test_merge.py -> build/bdist.linux-armv7l/wheel/gffutils/test
2020-09-12T05:03:01,267   copying build/lib/gffutils/test/test_merge_all.py -> build/bdist.linux-armv7l/wheel/gffutils/test
2020-09-12T05:03:01,274   copying build/lib/gffutils/test/expected.py -> build/bdist.linux-armv7l/wheel/gffutils/test
2020-09-12T05:03:01,280   copying build/lib/gffutils/convert.py -> build/bdist.linux-armv7l/wheel/gffutils
2020-09-12T05:03:01,285   copying build/lib/gffutils/constants.py -> build/bdist.linux-armv7l/wheel/gffutils
2020-09-12T05:03:01,290   copying build/lib/gffutils/merge_criteria.py -> build/bdist.linux-armv7l/wheel/gffutils
2020-09-12T05:03:01,295   copying build/lib/gffutils/interface.py -> build/bdist.linux-armv7l/wheel/gffutils
2020-09-12T05:03:01,306   copying build/lib/gffutils/exceptions.py -> build/bdist.linux-armv7l/wheel/gffutils
2020-09-12T05:03:01,312   creating build/bdist.linux-armv7l/wheel/gffutils/scripts
2020-09-12T05:03:01,314   copying build/lib/gffutils/scripts/gffutils-flybase-convert.py -> build/bdist.linux-armv7l/wheel/gffutils/scripts
2020-09-12T05:03:01,320   copying build/lib/gffutils/parser.py -> build/bdist.linux-armv7l/wheel/gffutils
2020-09-12T05:03:01,326   copying build/lib/gffutils/create.py -> build/bdist.linux-armv7l/wheel/gffutils
2020-09-12T05:03:01,336   copying build/lib/gffutils/pybedtools_integration.py -> build/bdist.linux-armv7l/wheel/gffutils
2020-09-12T05:03:01,341   running install_egg_info
2020-09-12T05:03:01,388   running egg_info
2020-09-12T05:03:01,391   writing gffutils.egg-info/PKG-INFO
2020-09-12T05:03:01,396   writing requirements to gffutils.egg-info/requires.txt
2020-09-12T05:03:01,399   writing dependency_links to gffutils.egg-info/dependency_links.txt
2020-09-12T05:03:01,402   writing top-level names to gffutils.egg-info/top_level.txt
2020-09-12T05:03:01,421   reading manifest file 'gffutils.egg-info/SOURCES.txt'
2020-09-12T05:03:01,429   reading manifest template 'MANIFEST.in'
2020-09-12T05:03:01,431   warning: no files found matching '*.rst' under directory 'docs/source'
2020-09-12T05:03:01,432   warning: no files found matching '*.py' under directory 'docs/source'
2020-09-12T05:03:01,434   warning: no files found matching '*' under directory 'docs/source/images'
2020-09-12T05:03:01,436   warning: no files found matching 'docs/Makefile'
2020-09-12T05:03:01,436   warning: no files found matching 'docs/make.bat'
2020-09-12T05:03:01,439   warning: no files found matching 'gffutils/test/data/__init__.py'
2020-09-12T05:03:01,441   warning: no files found matching 'gffutils/test/data/t.py'
2020-09-12T05:03:01,457   writing manifest file 'gffutils.egg-info/SOURCES.txt'
2020-09-12T05:03:01,461   Copying gffutils.egg-info to build/bdist.linux-armv7l/wheel/gffutils-0.10-py3.5.egg-info
2020-09-12T05:03:01,489   running install_scripts
2020-09-12T05:03:01,636   creating build/bdist.linux-armv7l/wheel/gffutils-0.10.data
2020-09-12T05:03:01,637   creating build/bdist.linux-armv7l/wheel/gffutils-0.10.data/scripts
2020-09-12T05:03:01,640   copying build/scripts-3.5/gffutils-cli -> build/bdist.linux-armv7l/wheel/gffutils-0.10.data/scripts
2020-09-12T05:03:01,646   changing mode of build/bdist.linux-armv7l/wheel/gffutils-0.10.data/scripts/gffutils-cli to 755
2020-09-12T05:03:01,716   creating build/bdist.linux-armv7l/wheel/gffutils-0.10.dist-info/WHEEL
2020-09-12T05:03:03,971   Building wheel for gffutils (setup.py): finished with status 'done'
2020-09-12T05:03:04,002   Created wheel for gffutils: filename=gffutils-0.10-py3-none-any.whl size=1608465 sha256=a0a5c59b160c35349aa71feadf2a5bd0f82acf3372cc5f137077c3d94babb938
2020-09-12T05:03:04,003   Stored in directory: /tmp/pip-ephem-wheel-cache-zhcs4gcg/wheels/49/3f/42/af4a54c365b400f25ba06dcff9efc570861b4b9867a3de3d1c
2020-09-12T05:03:04,007 Successfully built gffutils
2020-09-12T05:03:04,295 Removed build tracker: '/tmp/pip-req-tracker-ivaub_8v'