2020-09-12T16:50:31,015 Created temporary directory: /tmp/pip-ephem-wheel-cache-_15u731o
2020-09-12T16:50:31,018 Created temporary directory: /tmp/pip-req-tracker-i4stkptm
2020-09-12T16:50:31,018 Initialized build tracking at /tmp/pip-req-tracker-i4stkptm
2020-09-12T16:50:31,018 Created build tracker: /tmp/pip-req-tracker-i4stkptm
2020-09-12T16:50:31,018 Entered build tracker: /tmp/pip-req-tracker-i4stkptm
2020-09-12T16:50:31,019 Created temporary directory: /tmp/pip-wheel-_bemyliy
2020-09-12T16:50:31,027 1 location(s) to search for versions of megalodon:
2020-09-12T16:50:31,027 * https://pypi.org/simple/megalodon/
2020-09-12T16:50:31,027 Fetching project page and analyzing links: https://pypi.org/simple/megalodon/
2020-09-12T16:50:31,028 Getting page https://pypi.org/simple/megalodon/
2020-09-12T16:50:31,030 Found index url https://pypi.org/simple
2020-09-12T16:50:31,122   Skipping link: none of the wheel's tags match: cp37-cp37m-macosx_10_14_x86_64: https://files.pythonhosted.org/packages/fe/5f/fc169f4470c2ab9a3d0dcf7b0eba0752a950494eb6587cbe3425724bcbaa/megalodon-1.0.0-cp37-cp37m-macosx_10_14_x86_64.whl#sha256=de244047d7a7d1f08a86fbed509d20eeed709187f84e765d9b9a4f5359364a30 (from https://pypi.org/simple/megalodon/)
2020-09-12T16:50:31,123   Found link https://files.pythonhosted.org/packages/9b/94/e9a546cb3958043d7378b0d1b5eebe01ca3923db3de08a10ef230e27dff5/megalodon-1.0.0.tar.gz#sha256=a547c80eb95763ecf13fed66023953fa8fe6c98082e9e249ef0f859772f01ccc (from https://pypi.org/simple/megalodon/), version: 1.0.0
2020-09-12T16:50:31,123   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/15/da/db7e0d83c7237552d45289530e9418d460c7a994f0d2b6a1735f98f62ecf/megalodon-2.0.0-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=bcea1352257f402f82787a2494ebc02f35503c15edd739fe8663f1417447be13 (from https://pypi.org/simple/megalodon/)
2020-09-12T16:50:31,124   Found link https://files.pythonhosted.org/packages/1d/e0/6a40deaac257dacfb2c31c056b37abd76e8ddfc8e852ea5117cb3d67b220/megalodon-2.0.0.tar.gz#sha256=28deb452ba87cfdf116bcdbc2e6335ab3220d363a7f545594d43c60cf8e9040c (from https://pypi.org/simple/megalodon/), version: 2.0.0
2020-09-12T16:50:31,124   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/33/7c/bfd056d9b7d5a618f61d28fe44d2402a16b6a959f9a30cd13f8dc7046e4c/megalodon-2.1.0-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=1052edf69302c8d018bdde48d6673c03364255acdfde0aa9938997fee66f7fbe (from https://pypi.org/simple/megalodon/)
2020-09-12T16:50:31,124   Found link https://files.pythonhosted.org/packages/aa/cc/b3c81dc70660c4e043180ea7535b8b42dd8724cddd784dbeb039ff2bf0c5/megalodon-2.1.0.tar.gz#sha256=1e6db96a9d14a1041b435f4cf0fdd19a0809490efd4c2d4dae7eeaa2423db3a3 (from https://pypi.org/simple/megalodon/), version: 2.1.0
2020-09-12T16:50:31,125   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/82/eb/8a50a84306188acf8c4dc1855184d652e6497a11343769b2d6b474a96d66/megalodon-2.2.0-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=d138a85f21444a1105bc8c056b92e44a3866692291d7af3d76f87dcab8f986b1 (from https://pypi.org/simple/megalodon/)
2020-09-12T16:50:31,125   Found link https://files.pythonhosted.org/packages/74/a9/32eb1037cb5e427a433a648e02fd0e3e137d8803320858190e7b2fec74a7/megalodon-2.2.0.tar.gz#sha256=0f057644f21ce76ea8b50625e297c9f9449e0710a9423387c4d7da43b4e13115 (from https://pypi.org/simple/megalodon/), version: 2.2.0
2020-09-12T16:50:31,125   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/82/27/2831a1d28162814e76b2e8a11fce724981e8859d1bc01f6466c242c4aca8/megalodon-2.2.1-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=2cad064accda0a6aef3ac728fc3a1bdd4016145eb16cb322b542b0312cdb5cd5 (from https://pypi.org/simple/megalodon/)
2020-09-12T16:50:31,126   Found link https://files.pythonhosted.org/packages/af/83/f12260694514be27333adb79165bc3958b59909eb21495b918a98e0e6f07/megalodon-2.2.1.tar.gz#sha256=33f3fdeae806a34fc9a0e2b3cb5b4d5bf7c1822c6eb00f9ed8a3cd2fb1327ef7 (from https://pypi.org/simple/megalodon/), version: 2.2.1
2020-09-12T16:50:31,127 Given no hashes to check 1 links for project 'megalodon': discarding no candidates
2020-09-12T16:50:31,127 Using version 2.1.0 (newest of versions: 2.1.0)
2020-09-12T16:50:31,131 Collecting megalodon==2.1.0
2020-09-12T16:50:31,133   Created temporary directory: /tmp/pip-unpack-e7er6nhw
2020-09-12T16:50:31,178   Downloading megalodon-2.1.0.tar.gz (6.5 MB)
2020-09-12T16:50:32,638   Added megalodon==2.1.0 from https://files.pythonhosted.org/packages/aa/cc/b3c81dc70660c4e043180ea7535b8b42dd8724cddd784dbeb039ff2bf0c5/megalodon-2.1.0.tar.gz#sha256=1e6db96a9d14a1041b435f4cf0fdd19a0809490efd4c2d4dae7eeaa2423db3a3 to build tracker '/tmp/pip-req-tracker-i4stkptm'
2020-09-12T16:50:32,639     Running setup.py (path:/tmp/pip-wheel-_bemyliy/megalodon/setup.py) egg_info for package megalodon
2020-09-12T16:50:32,640     Created temporary directory: /tmp/pip-pip-egg-info-76y_s8iy
2020-09-12T16:50:32,640     Running command python setup.py egg_info
2020-09-12T16:50:33,837     running egg_info
2020-09-12T16:50:33,839     creating /tmp/pip-pip-egg-info-76y_s8iy/megalodon.egg-info
2020-09-12T16:50:33,840     writing /tmp/pip-pip-egg-info-76y_s8iy/megalodon.egg-info/PKG-INFO
2020-09-12T16:50:33,842     writing dependency_links to /tmp/pip-pip-egg-info-76y_s8iy/megalodon.egg-info/dependency_links.txt
2020-09-12T16:50:33,844     writing entry points to /tmp/pip-pip-egg-info-76y_s8iy/megalodon.egg-info/entry_points.txt
2020-09-12T16:50:33,845     writing requirements to /tmp/pip-pip-egg-info-76y_s8iy/megalodon.egg-info/requires.txt
2020-09-12T16:50:33,847     writing top-level names to /tmp/pip-pip-egg-info-76y_s8iy/megalodon.egg-info/top_level.txt
2020-09-12T16:50:33,848     writing manifest file '/tmp/pip-pip-egg-info-76y_s8iy/megalodon.egg-info/SOURCES.txt'
2020-09-12T16:50:34,209     reading manifest file '/tmp/pip-pip-egg-info-76y_s8iy/megalodon.egg-info/SOURCES.txt'
2020-09-12T16:50:34,211     reading manifest template 'MANIFEST.in'
2020-09-12T16:50:34,216     writing manifest file '/tmp/pip-pip-egg-info-76y_s8iy/megalodon.egg-info/SOURCES.txt'
2020-09-12T16:50:34,315   Source in /tmp/pip-wheel-_bemyliy/megalodon has version 2.1.0, which satisfies requirement megalodon==2.1.0 from https://files.pythonhosted.org/packages/aa/cc/b3c81dc70660c4e043180ea7535b8b42dd8724cddd784dbeb039ff2bf0c5/megalodon-2.1.0.tar.gz#sha256=1e6db96a9d14a1041b435f4cf0fdd19a0809490efd4c2d4dae7eeaa2423db3a3
2020-09-12T16:50:34,316   Removed megalodon==2.1.0 from https://files.pythonhosted.org/packages/aa/cc/b3c81dc70660c4e043180ea7535b8b42dd8724cddd784dbeb039ff2bf0c5/megalodon-2.1.0.tar.gz#sha256=1e6db96a9d14a1041b435f4cf0fdd19a0809490efd4c2d4dae7eeaa2423db3a3 from build tracker '/tmp/pip-req-tracker-i4stkptm'
2020-09-12T16:50:34,318 Building wheels for collected packages: megalodon
2020-09-12T16:50:34,323   Created temporary directory: /tmp/pip-wheel-1izjrh1y
2020-09-12T16:50:34,324   Building wheel for megalodon (setup.py): started
2020-09-12T16:50:34,324   Destination directory: /tmp/pip-wheel-1izjrh1y
2020-09-12T16:50:34,324   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-_bemyliy/megalodon/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-_bemyliy/megalodon/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-1izjrh1y
2020-09-12T16:50:35,481   running bdist_wheel
2020-09-12T16:50:35,487   running build
2020-09-12T16:50:35,487   running build_py
2020-09-12T16:50:35,614   creating build
2020-09-12T16:50:35,615   creating build/lib.linux-armv7l-3.7
2020-09-12T16:50:35,616   creating build/lib.linux-armv7l-3.7/megalodon
2020-09-12T16:50:35,617   copying megalodon/mods.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T16:50:35,622   copying megalodon/logging.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T16:50:35,623   copying megalodon/megalodon_helper.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T16:50:35,627   copying megalodon/__main__.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T16:50:35,630   copying megalodon/_version.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T16:50:35,632   copying megalodon/backends.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T16:50:35,636   copying megalodon/calibration.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T16:50:35,639   copying megalodon/__init__.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T16:50:35,641   copying megalodon/mapping.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T16:50:35,644   copying megalodon/variants.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T16:50:35,650   copying megalodon/fast5_io.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T16:50:35,652   copying megalodon/megalodon.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T16:50:35,657   copying megalodon/aggregate.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T16:50:35,660   copying megalodon/signal_mapping.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T16:50:35,665   creating build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T16:50:35,666   copying megalodon_extras/validate_results.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T16:50:35,670   copying megalodon_extras/merge_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T16:50:35,673   copying megalodon_extras/variants_heterozygous_factor.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T16:50:35,675   copying megalodon_extras/modified_bases_describe_alphabet.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T16:50:35,678   copying megalodon_extras/calibrate_generate_modified_base_stats.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T16:50:35,681   copying megalodon_extras/_extras_parsers.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T16:50:35,685   copying megalodon_extras/aggregate_run.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T16:50:35,687   copying megalodon_extras/phase_variants_merge_haploid_variants.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T16:50:35,690   copying megalodon_extras/__main__.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T16:50:35,692   copying megalodon_extras/calibrate_generate_variant_stats.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T16:50:35,695   copying megalodon_extras/__init__.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T16:50:35,697   copying megalodon_extras/validate_aggregated_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T16:50:35,700   copying megalodon_extras/merge_variants.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T16:50:35,703   copying megalodon_extras/modified_bases_estimate_threshold.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T16:50:35,705   copying megalodon_extras/calibrate_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T16:50:35,707   copying megalodon_extras/modified_bases_update_database.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T16:50:35,710   copying megalodon_extras/phase_variants_extract_haplotype_reads.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T16:50:35,712   copying megalodon_extras/per_read_text_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T16:50:35,714   copying megalodon_extras/modified_bases_create_ground_truth.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T16:50:35,716   copying megalodon_extras/calibrate_variants.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T16:50:35,719   copying megalodon_extras/calibrate_merge_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T16:50:35,722   copying megalodon_extras/per_read_text_variants.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T16:50:35,724   copying megalodon_extras/variants_atomize.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T16:50:35,727   copying megalodon_extras/variants_resolve.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T16:50:35,730   copying megalodon_extras/validate_compare_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T16:50:35,733   copying megalodon_extras/phase_variants_whatshap_filter.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T16:50:35,749   creating build/lib.linux-armv7l-3.7/megalodon/model_data
2020-09-12T16:50:35,750   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-09-12T16:50:35,751   copying megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-09-12T16:50:35,788   copying megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-09-12T16:50:35,796   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-12T16:50:35,797   copying megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-12T16:50:35,824   copying megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-12T16:50:35,830   copying megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-12T16:50:35,838   copying megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-12T16:50:35,841   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-09-12T16:50:35,842   copying megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-09-12T16:50:35,870   copying megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-09-12T16:50:35,877   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-09-12T16:50:35,877   copying megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-09-12T16:50:35,902   copying megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-09-12T16:50:35,912   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-09-12T16:50:35,913   copying megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-09-12T16:50:35,917   copying megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-09-12T16:50:35,920   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-12T16:50:35,921   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-12T16:50:35,949   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-12T16:50:35,954   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-12T16:50:35,961   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-12T16:50:35,967   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-09-12T16:50:35,968   copying megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-09-12T16:50:35,997   copying megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-09-12T16:50:36,005   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-09-12T16:50:36,006   copying megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-09-12T16:50:36,038   copying megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-09-12T16:50:36,045   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-09-12T16:50:36,046   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-09-12T16:50:36,050   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-09-12T16:50:36,053   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-12T16:50:36,054   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-12T16:50:36,084   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-12T16:50:36,089   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-12T16:50:36,096   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-12T16:50:36,102   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-09-12T16:50:36,103   copying megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-09-12T16:50:36,137   copying megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-09-12T16:50:36,145   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-09-12T16:50:36,147   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-09-12T16:50:36,153   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-09-12T16:50:36,162   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-09-12T16:50:36,163   copying megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-09-12T16:50:36,204   copying megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-09-12T16:50:36,213   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-09-12T16:50:36,214   copying megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-09-12T16:50:36,240   copying megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-09-12T16:50:36,252   running build_ext
2020-09-12T16:50:36,451   cythoning megalodon/_decode.pyx to megalodon/_decode.c
2020-09-12T16:50:38,765   building 'megalodon.decode' extension
2020-09-12T16:50:38,765   creating build/temp.linux-armv7l-3.7
2020-09-12T16:50:38,766   creating build/temp.linux-armv7l-3.7/megalodon
2020-09-12T16:50:38,766   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c megalodon/_decode.c -o build/temp.linux-armv7l-3.7/megalodon/_decode.o -std=c99
2020-09-12T16:50:39,138   In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2020-09-12T16:50:39,138                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2020-09-12T16:50:39,139                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2020-09-12T16:50:39,139                    from megalodon/_decode.c:612:
2020-09-12T16:50:39,139   /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2020-09-12T16:50:39,139    #warning "Using deprecated NumPy API, disable it with " \
2020-09-12T16:50:39,140     ^~~~~~~
2020-09-12T16:50:50,173   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/megalodon/_decode.o -o build/lib.linux-armv7l-3.7/megalodon/decode.cpython-37m-arm-linux-gnueabihf.so
2020-09-12T16:50:50,337   installing to build/bdist.linux-armv7l/wheel
2020-09-12T16:50:50,337   running install
2020-09-12T16:50:50,338   running install_lib
2020-09-12T16:50:50,343   creating build/bdist.linux-armv7l
2020-09-12T16:50:50,343   creating build/bdist.linux-armv7l/wheel
2020-09-12T16:50:50,345   creating build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T16:50:50,347   copying build/lib.linux-armv7l-3.7/megalodon/mods.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T16:50:50,353   copying build/lib.linux-armv7l-3.7/megalodon/logging.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T16:50:50,357   creating build/bdist.linux-armv7l/wheel/megalodon/model_data
2020-09-12T16:50:50,358   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-09-12T16:50:50,360   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-09-12T16:50:50,389   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-09-12T16:50:50,395   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-12T16:50:50,396   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-12T16:50:50,425   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-12T16:50:50,429   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-12T16:50:50,436   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-12T16:50:50,440   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-09-12T16:50:50,441   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-09-12T16:50:50,464   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-09-12T16:50:50,471   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-09-12T16:50:50,471   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-09-12T16:50:50,494   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-09-12T16:50:50,504   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-09-12T16:50:50,505   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-09-12T16:50:50,510   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-09-12T16:50:50,514   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-12T16:50:50,515   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-12T16:50:50,542   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-12T16:50:50,547   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-12T16:50:50,554   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-12T16:50:50,560   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-09-12T16:50:50,561   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-09-12T16:50:50,587   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-09-12T16:50:50,596   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-09-12T16:50:50,597   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-09-12T16:50:50,628   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-09-12T16:50:50,637   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-09-12T16:50:50,637   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-09-12T16:50:50,641   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-09-12T16:50:50,644   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-12T16:50:50,645   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-12T16:50:50,672   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-12T16:50:50,677   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-12T16:50:50,685   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-12T16:50:50,693   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-09-12T16:50:50,694   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-09-12T16:50:50,715   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-09-12T16:50:50,722   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-09-12T16:50:50,723   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-09-12T16:50:50,726   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-09-12T16:50:50,735   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-09-12T16:50:50,736   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-09-12T16:50:50,762   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-09-12T16:50:50,770   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-09-12T16:50:50,771   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-09-12T16:50:50,792   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-09-12T16:50:50,799   copying build/lib.linux-armv7l-3.7/megalodon/megalodon_helper.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T16:50:50,803   copying build/lib.linux-armv7l-3.7/megalodon/__main__.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T16:50:50,806   copying build/lib.linux-armv7l-3.7/megalodon/_version.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T16:50:50,808   copying build/lib.linux-armv7l-3.7/megalodon/backends.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T16:50:50,812   copying build/lib.linux-armv7l-3.7/megalodon/decode.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T16:50:50,832   copying build/lib.linux-armv7l-3.7/megalodon/calibration.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T16:50:50,834   copying build/lib.linux-armv7l-3.7/megalodon/__init__.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T16:50:50,836   copying build/lib.linux-armv7l-3.7/megalodon/mapping.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T16:50:50,840   copying build/lib.linux-armv7l-3.7/megalodon/variants.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T16:50:50,845   copying build/lib.linux-armv7l-3.7/megalodon/fast5_io.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T16:50:50,847   copying build/lib.linux-armv7l-3.7/megalodon/megalodon.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T16:50:50,852   copying build/lib.linux-armv7l-3.7/megalodon/aggregate.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T16:50:50,855   copying build/lib.linux-armv7l-3.7/megalodon/signal_mapping.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T16:50:50,860   creating build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T16:50:50,861   copying build/lib.linux-armv7l-3.7/megalodon_extras/validate_results.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T16:50:50,864   copying build/lib.linux-armv7l-3.7/megalodon_extras/merge_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T16:50:50,868   copying build/lib.linux-armv7l-3.7/megalodon_extras/variants_heterozygous_factor.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T16:50:50,870   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_describe_alphabet.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T16:50:50,873   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_generate_modified_base_stats.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T16:50:50,875   copying build/lib.linux-armv7l-3.7/megalodon_extras/_extras_parsers.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T16:50:50,879   copying build/lib.linux-armv7l-3.7/megalodon_extras/aggregate_run.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T16:50:50,881   copying build/lib.linux-armv7l-3.7/megalodon_extras/phase_variants_merge_haploid_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T16:50:50,884   copying build/lib.linux-armv7l-3.7/megalodon_extras/__main__.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T16:50:50,887   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_generate_variant_stats.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T16:50:50,890   copying build/lib.linux-armv7l-3.7/megalodon_extras/__init__.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T16:50:50,891   copying build/lib.linux-armv7l-3.7/megalodon_extras/validate_aggregated_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T16:50:50,894   copying build/lib.linux-armv7l-3.7/megalodon_extras/merge_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T16:50:50,897   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_estimate_threshold.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T16:50:50,899   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T16:50:50,902   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_update_database.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T16:50:50,904   copying build/lib.linux-armv7l-3.7/megalodon_extras/phase_variants_extract_haplotype_reads.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T16:50:50,906   copying build/lib.linux-armv7l-3.7/megalodon_extras/per_read_text_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T16:50:50,909   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_create_ground_truth.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T16:50:50,911   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T16:50:50,914   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_merge_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T16:50:50,916   copying build/lib.linux-armv7l-3.7/megalodon_extras/per_read_text_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T16:50:50,919   copying build/lib.linux-armv7l-3.7/megalodon_extras/variants_atomize.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T16:50:50,921   copying build/lib.linux-armv7l-3.7/megalodon_extras/variants_resolve.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T16:50:50,924   copying build/lib.linux-armv7l-3.7/megalodon_extras/validate_compare_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T16:50:50,927   copying build/lib.linux-armv7l-3.7/megalodon_extras/phase_variants_whatshap_filter.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T16:50:50,929   running install_egg_info
2020-09-12T16:50:50,957   running egg_info
2020-09-12T16:50:50,957   writing megalodon.egg-info/PKG-INFO
2020-09-12T16:50:50,960   writing dependency_links to megalodon.egg-info/dependency_links.txt
2020-09-12T16:50:50,962   writing entry points to megalodon.egg-info/entry_points.txt
2020-09-12T16:50:50,963   writing requirements to megalodon.egg-info/requires.txt
2020-09-12T16:50:50,964   writing top-level names to megalodon.egg-info/top_level.txt
2020-09-12T16:50:50,997   reading manifest file 'megalodon.egg-info/SOURCES.txt'
2020-09-12T16:50:51,002   reading manifest template 'MANIFEST.in'
2020-09-12T16:50:51,012   writing manifest file 'megalodon.egg-info/SOURCES.txt'
2020-09-12T16:50:51,015   Copying megalodon.egg-info to build/bdist.linux-armv7l/wheel/megalodon-2.1.0-py3.7.egg-info
2020-09-12T16:50:51,032   running install_scripts
2020-09-12T16:50:51,091   adding license file "LICENCE.txt" (matched pattern "LICEN[CS]E*")
2020-09-12T16:50:51,098   creating build/bdist.linux-armv7l/wheel/megalodon-2.1.0.dist-info/WHEEL
2020-09-12T16:50:51,101   creating '/tmp/pip-wheel-1izjrh1y/megalodon-2.1.0-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-09-12T16:50:51,104   adding 'megalodon/__init__.py'
2020-09-12T16:50:51,107   adding 'megalodon/__main__.py'
2020-09-12T16:50:51,109   adding 'megalodon/_version.py'
2020-09-12T16:50:51,111   adding 'megalodon/aggregate.py'
2020-09-12T16:50:51,117   adding 'megalodon/backends.py'
2020-09-12T16:50:51,120   adding 'megalodon/calibration.py'
2020-09-12T16:50:51,244   adding 'megalodon/decode.cpython-37m-arm-linux-gnueabihf.so'
2020-09-12T16:50:51,249   adding 'megalodon/fast5_io.py'
2020-09-12T16:50:51,250   adding 'megalodon/logging.py'
2020-09-12T16:50:51,252   adding 'megalodon/mapping.py'
2020-09-12T16:50:51,258   adding 'megalodon/megalodon.py'
2020-09-12T16:50:51,261   adding 'megalodon/megalodon_helper.py'
2020-09-12T16:50:51,272   adding 'megalodon/mods.py'
2020-09-12T16:50:51,274   adding 'megalodon/signal_mapping.py'
2020-09-12T16:50:51,285   adding 'megalodon/variants.py'
2020-09-12T16:50:51,346   adding 'megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.npz'
2020-09-12T16:50:51,371   adding 'megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.pdf'
2020-09-12T16:50:51,421   adding 'megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.npz'
2020-09-12T16:50:51,449   adding 'megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf'
2020-09-12T16:50:51,497   adding 'megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.npz'
2020-09-12T16:50:51,525   adding 'megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.pdf'
2020-09-12T16:50:51,576   adding 'megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.npz'
2020-09-12T16:50:51,603   adding 'megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf'
2020-09-12T16:50:51,662   adding 'megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.npz'
2020-09-12T16:50:51,689   adding 'megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.pdf'
2020-09-12T16:50:51,744   adding 'megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.npz'
2020-09-12T16:50:51,770   adding 'megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf'
2020-09-12T16:50:51,830   adding 'megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.npz'
2020-09-12T16:50:51,857   adding 'megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.pdf'
2020-09-12T16:50:51,907   adding 'megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.npz'
2020-09-12T16:50:51,935   adding 'megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf'
2020-09-12T16:50:51,945   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.npz'
2020-09-12T16:50:51,966   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.pdf'
2020-09-12T16:50:52,024   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.npz'
2020-09-12T16:50:52,053   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.pdf'
2020-09-12T16:50:52,063   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.npz'
2020-09-12T16:50:52,085   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.pdf'
2020-09-12T16:50:52,139   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.npz'
2020-09-12T16:50:52,169   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.pdf'
2020-09-12T16:50:52,177   adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.npz'
2020-09-12T16:50:52,182   adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.pdf'
2020-09-12T16:50:52,227   adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.npz'
2020-09-12T16:50:52,254   adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.pdf'
2020-09-12T16:50:52,264   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.npz'
2020-09-12T16:50:52,285   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.pdf'
2020-09-12T16:50:52,291   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz'
2020-09-12T16:50:52,294   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf'
2020-09-12T16:50:52,298   adding 'megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz'
2020-09-12T16:50:52,301   adding 'megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf'
2020-09-12T16:50:52,305   adding 'megalodon_extras/__init__.py'
2020-09-12T16:50:52,307   adding 'megalodon_extras/__main__.py'
2020-09-12T16:50:52,310   adding 'megalodon_extras/_extras_parsers.py'
2020-09-12T16:50:52,312   adding 'megalodon_extras/aggregate_run.py'
2020-09-12T16:50:52,313   adding 'megalodon_extras/calibrate_generate_modified_base_stats.py'
2020-09-12T16:50:52,315   adding 'megalodon_extras/calibrate_generate_variant_stats.py'
2020-09-12T16:50:52,317   adding 'megalodon_extras/calibrate_merge_modified_bases.py'
2020-09-12T16:50:52,318   adding 'megalodon_extras/calibrate_modified_bases.py'
2020-09-12T16:50:52,320   adding 'megalodon_extras/calibrate_variants.py'
2020-09-12T16:50:52,322   adding 'megalodon_extras/merge_modified_bases.py'
2020-09-12T16:50:52,323   adding 'megalodon_extras/merge_variants.py'
2020-09-12T16:50:52,324   adding 'megalodon_extras/modified_bases_create_ground_truth.py'
2020-09-12T16:50:52,326   adding 'megalodon_extras/modified_bases_describe_alphabet.py'
2020-09-12T16:50:52,327   adding 'megalodon_extras/modified_bases_estimate_threshold.py'
2020-09-12T16:50:52,328   adding 'megalodon_extras/modified_bases_update_database.py'
2020-09-12T16:50:52,330   adding 'megalodon_extras/per_read_text_modified_bases.py'
2020-09-12T16:50:52,331   adding 'megalodon_extras/per_read_text_variants.py'
2020-09-12T16:50:52,332   adding 'megalodon_extras/phase_variants_extract_haplotype_reads.py'
2020-09-12T16:50:52,334   adding 'megalodon_extras/phase_variants_merge_haploid_variants.py'
2020-09-12T16:50:52,335   adding 'megalodon_extras/phase_variants_whatshap_filter.py'
2020-09-12T16:50:52,337   adding 'megalodon_extras/validate_aggregated_modified_bases.py'
2020-09-12T16:50:52,339   adding 'megalodon_extras/validate_compare_modified_bases.py'
2020-09-12T16:50:52,342   adding 'megalodon_extras/validate_results.py'
2020-09-12T16:50:52,343   adding 'megalodon_extras/variants_atomize.py'
2020-09-12T16:50:52,344   adding 'megalodon_extras/variants_heterozygous_factor.py'
2020-09-12T16:50:52,346   adding 'megalodon_extras/variants_resolve.py'
2020-09-12T16:50:52,348   adding 'megalodon-2.1.0.dist-info/LICENCE.txt'
2020-09-12T16:50:52,350   adding 'megalodon-2.1.0.dist-info/METADATA'
2020-09-12T16:50:52,351   adding 'megalodon-2.1.0.dist-info/WHEEL'
2020-09-12T16:50:52,352   adding 'megalodon-2.1.0.dist-info/entry_points.txt'
2020-09-12T16:50:52,352   adding 'megalodon-2.1.0.dist-info/top_level.txt'
2020-09-12T16:50:52,354   adding 'megalodon-2.1.0.dist-info/RECORD'
2020-09-12T16:50:52,456   removing build/bdist.linux-armv7l/wheel
2020-09-12T16:50:52,771   Building wheel for megalodon (setup.py): finished with status 'done'
2020-09-12T16:50:52,843   Created wheel for megalodon: filename=megalodon-2.1.0-cp37-cp37m-linux_armv7l.whl size=6713068 sha256=ff7ed8ac5b1eeeda00e3e84f4c97937efb5d9a3aba4716019c4ce44dbce7b298
2020-09-12T16:50:52,843   Stored in directory: /tmp/pip-ephem-wheel-cache-_15u731o/wheels/51/28/2f/2ef251975272a3f5d2c8ca17053d25e20c9481e298742edb67
2020-09-12T16:50:52,845 Successfully built megalodon
2020-09-12T16:50:53,066 Removed build tracker: '/tmp/pip-req-tracker-i4stkptm'