2020-09-12T18:28:08,212 Created temporary directory: /tmp/pip-ephem-wheel-cache-oqf78w8o
2020-09-12T18:28:08,215 Created temporary directory: /tmp/pip-req-tracker-30hkw56f
2020-09-12T18:28:08,215 Initialized build tracking at /tmp/pip-req-tracker-30hkw56f
2020-09-12T18:28:08,216 Created build tracker: /tmp/pip-req-tracker-30hkw56f
2020-09-12T18:28:08,216 Entered build tracker: /tmp/pip-req-tracker-30hkw56f
2020-09-12T18:28:08,217 Created temporary directory: /tmp/pip-wheel-pjlwyd_h
2020-09-12T18:28:08,225 1 location(s) to search for versions of megalodon:
2020-09-12T18:28:08,225 * https://pypi.org/simple/megalodon/
2020-09-12T18:28:08,225 Fetching project page and analyzing links: https://pypi.org/simple/megalodon/
2020-09-12T18:28:08,225 Getting page https://pypi.org/simple/megalodon/
2020-09-12T18:28:08,227 Found index url https://pypi.org/simple
2020-09-12T18:28:08,319   Skipping link: none of the wheel's tags match: cp37-cp37m-macosx_10_14_x86_64: https://files.pythonhosted.org/packages/fe/5f/fc169f4470c2ab9a3d0dcf7b0eba0752a950494eb6587cbe3425724bcbaa/megalodon-1.0.0-cp37-cp37m-macosx_10_14_x86_64.whl#sha256=de244047d7a7d1f08a86fbed509d20eeed709187f84e765d9b9a4f5359364a30 (from https://pypi.org/simple/megalodon/)
2020-09-12T18:28:08,319   Found link https://files.pythonhosted.org/packages/9b/94/e9a546cb3958043d7378b0d1b5eebe01ca3923db3de08a10ef230e27dff5/megalodon-1.0.0.tar.gz#sha256=a547c80eb95763ecf13fed66023953fa8fe6c98082e9e249ef0f859772f01ccc (from https://pypi.org/simple/megalodon/), version: 1.0.0
2020-09-12T18:28:08,320   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/15/da/db7e0d83c7237552d45289530e9418d460c7a994f0d2b6a1735f98f62ecf/megalodon-2.0.0-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=bcea1352257f402f82787a2494ebc02f35503c15edd739fe8663f1417447be13 (from https://pypi.org/simple/megalodon/)
2020-09-12T18:28:08,320   Found link https://files.pythonhosted.org/packages/1d/e0/6a40deaac257dacfb2c31c056b37abd76e8ddfc8e852ea5117cb3d67b220/megalodon-2.0.0.tar.gz#sha256=28deb452ba87cfdf116bcdbc2e6335ab3220d363a7f545594d43c60cf8e9040c (from https://pypi.org/simple/megalodon/), version: 2.0.0
2020-09-12T18:28:08,320   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/33/7c/bfd056d9b7d5a618f61d28fe44d2402a16b6a959f9a30cd13f8dc7046e4c/megalodon-2.1.0-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=1052edf69302c8d018bdde48d6673c03364255acdfde0aa9938997fee66f7fbe (from https://pypi.org/simple/megalodon/)
2020-09-12T18:28:08,321   Found link https://files.pythonhosted.org/packages/aa/cc/b3c81dc70660c4e043180ea7535b8b42dd8724cddd784dbeb039ff2bf0c5/megalodon-2.1.0.tar.gz#sha256=1e6db96a9d14a1041b435f4cf0fdd19a0809490efd4c2d4dae7eeaa2423db3a3 (from https://pypi.org/simple/megalodon/), version: 2.1.0
2020-09-12T18:28:08,321   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/82/eb/8a50a84306188acf8c4dc1855184d652e6497a11343769b2d6b474a96d66/megalodon-2.2.0-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=d138a85f21444a1105bc8c056b92e44a3866692291d7af3d76f87dcab8f986b1 (from https://pypi.org/simple/megalodon/)
2020-09-12T18:28:08,321   Found link https://files.pythonhosted.org/packages/74/a9/32eb1037cb5e427a433a648e02fd0e3e137d8803320858190e7b2fec74a7/megalodon-2.2.0.tar.gz#sha256=0f057644f21ce76ea8b50625e297c9f9449e0710a9423387c4d7da43b4e13115 (from https://pypi.org/simple/megalodon/), version: 2.2.0
2020-09-12T18:28:08,322   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/82/27/2831a1d28162814e76b2e8a11fce724981e8859d1bc01f6466c242c4aca8/megalodon-2.2.1-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=2cad064accda0a6aef3ac728fc3a1bdd4016145eb16cb322b542b0312cdb5cd5 (from https://pypi.org/simple/megalodon/)
2020-09-12T18:28:08,322   Found link https://files.pythonhosted.org/packages/af/83/f12260694514be27333adb79165bc3958b59909eb21495b918a98e0e6f07/megalodon-2.2.1.tar.gz#sha256=33f3fdeae806a34fc9a0e2b3cb5b4d5bf7c1822c6eb00f9ed8a3cd2fb1327ef7 (from https://pypi.org/simple/megalodon/), version: 2.2.1
2020-09-12T18:28:08,323 Given no hashes to check 1 links for project 'megalodon': discarding no candidates
2020-09-12T18:28:08,324 Using version 2.2.0 (newest of versions: 2.2.0)
2020-09-12T18:28:08,328 Collecting megalodon==2.2.0
2020-09-12T18:28:08,330   Created temporary directory: /tmp/pip-unpack-5c6eubr2
2020-09-12T18:28:08,369   Downloading megalodon-2.2.0.tar.gz (6.5 MB)
2020-09-12T18:28:09,848   Added megalodon==2.2.0 from https://files.pythonhosted.org/packages/74/a9/32eb1037cb5e427a433a648e02fd0e3e137d8803320858190e7b2fec74a7/megalodon-2.2.0.tar.gz#sha256=0f057644f21ce76ea8b50625e297c9f9449e0710a9423387c4d7da43b4e13115 to build tracker '/tmp/pip-req-tracker-30hkw56f'
2020-09-12T18:28:09,849     Running setup.py (path:/tmp/pip-wheel-pjlwyd_h/megalodon/setup.py) egg_info for package megalodon
2020-09-12T18:28:09,850     Created temporary directory: /tmp/pip-pip-egg-info-6bwvtrhp
2020-09-12T18:28:09,851     Running command python setup.py egg_info
2020-09-12T18:28:11,113     running egg_info
2020-09-12T18:28:11,115     creating /tmp/pip-pip-egg-info-6bwvtrhp/megalodon.egg-info
2020-09-12T18:28:11,116     writing /tmp/pip-pip-egg-info-6bwvtrhp/megalodon.egg-info/PKG-INFO
2020-09-12T18:28:11,120     writing dependency_links to /tmp/pip-pip-egg-info-6bwvtrhp/megalodon.egg-info/dependency_links.txt
2020-09-12T18:28:11,122     writing entry points to /tmp/pip-pip-egg-info-6bwvtrhp/megalodon.egg-info/entry_points.txt
2020-09-12T18:28:11,123     writing requirements to /tmp/pip-pip-egg-info-6bwvtrhp/megalodon.egg-info/requires.txt
2020-09-12T18:28:11,124     writing top-level names to /tmp/pip-pip-egg-info-6bwvtrhp/megalodon.egg-info/top_level.txt
2020-09-12T18:28:11,126     writing manifest file '/tmp/pip-pip-egg-info-6bwvtrhp/megalodon.egg-info/SOURCES.txt'
2020-09-12T18:28:11,536     reading manifest file '/tmp/pip-pip-egg-info-6bwvtrhp/megalodon.egg-info/SOURCES.txt'
2020-09-12T18:28:11,537     reading manifest template 'MANIFEST.in'
2020-09-12T18:28:11,543     writing manifest file '/tmp/pip-pip-egg-info-6bwvtrhp/megalodon.egg-info/SOURCES.txt'
2020-09-12T18:28:11,643   Source in /tmp/pip-wheel-pjlwyd_h/megalodon has version 2.2.0, which satisfies requirement megalodon==2.2.0 from https://files.pythonhosted.org/packages/74/a9/32eb1037cb5e427a433a648e02fd0e3e137d8803320858190e7b2fec74a7/megalodon-2.2.0.tar.gz#sha256=0f057644f21ce76ea8b50625e297c9f9449e0710a9423387c4d7da43b4e13115
2020-09-12T18:28:11,644   Removed megalodon==2.2.0 from https://files.pythonhosted.org/packages/74/a9/32eb1037cb5e427a433a648e02fd0e3e137d8803320858190e7b2fec74a7/megalodon-2.2.0.tar.gz#sha256=0f057644f21ce76ea8b50625e297c9f9449e0710a9423387c4d7da43b4e13115 from build tracker '/tmp/pip-req-tracker-30hkw56f'
2020-09-12T18:28:11,647 Building wheels for collected packages: megalodon
2020-09-12T18:28:11,651   Created temporary directory: /tmp/pip-wheel-_pdslbpe
2020-09-12T18:28:11,651   Building wheel for megalodon (setup.py): started
2020-09-12T18:28:11,652   Destination directory: /tmp/pip-wheel-_pdslbpe
2020-09-12T18:28:11,652   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-pjlwyd_h/megalodon/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-pjlwyd_h/megalodon/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-_pdslbpe
2020-09-12T18:28:12,849   running bdist_wheel
2020-09-12T18:28:12,855   running build
2020-09-12T18:28:12,856   running build_py
2020-09-12T18:28:12,981   creating build
2020-09-12T18:28:12,981   creating build/lib.linux-armv7l-3.7
2020-09-12T18:28:12,982   creating build/lib.linux-armv7l-3.7/megalodon
2020-09-12T18:28:12,983   copying megalodon/mods.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T18:28:12,987   copying megalodon/__init__.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T18:28:12,989   copying megalodon/backends.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T18:28:12,992   copying megalodon/signal_mapping.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T18:28:12,994   copying megalodon/_version.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T18:28:12,996   copying megalodon/logging.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T18:28:12,998   copying megalodon/variants.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T18:28:13,003   copying megalodon/__main__.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T18:28:13,006   copying megalodon/aggregate.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T18:28:13,009   copying megalodon/megalodon_helper.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T18:28:13,013   copying megalodon/megalodon.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T18:28:13,017   copying megalodon/fast5_io.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T18:28:13,019   copying megalodon/mapping.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T18:28:13,022   copying megalodon/calibration.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T18:28:13,026   copying megalodon/megalodon_multiprocessing.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T18:28:13,031   creating build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:28:13,032   copying megalodon_extras/modified_bases_create_ground_truth.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:28:13,034   copying megalodon_extras/variants_resolve.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:28:13,038   copying megalodon_extras/calibrate_merge_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:28:13,040   copying megalodon_extras/merge_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:28:13,043   copying megalodon_extras/__init__.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:28:13,045   copying megalodon_extras/validate_aggregated_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:28:13,047   copying megalodon_extras/per_read_text_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:28:13,050   copying megalodon_extras/variants_index_database.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:28:13,052   copying megalodon_extras/modified_bases_update_database.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:28:13,055   copying megalodon_extras/aggregate_run.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:28:13,057   copying megalodon_extras/modified_bases_describe_alphabet.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:28:13,060   copying megalodon_extras/merge_variants.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:28:13,062   copying megalodon_extras/modified_bases_estimate_threshold.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:28:13,064   copying megalodon_extras/__main__.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:28:13,067   copying megalodon_extras/variants_atomize.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:28:13,069   copying megalodon_extras/phase_variants_whatshap_filter.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:28:13,072   copying megalodon_extras/variants_heterozygous_factor.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:28:13,074   copying megalodon_extras/calibrate_generate_variant_stats.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:28:13,077   copying megalodon_extras/modified_bases_split_by_motif.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:28:13,080   copying megalodon_extras/validate_compare_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:28:13,083   copying megalodon_extras/_extras_parsers.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:28:13,086   copying megalodon_extras/per_read_text_variants.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:28:13,089   copying megalodon_extras/phase_variants_extract_haplotype_reads.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:28:13,091   copying megalodon_extras/calibrate_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:28:13,094   copying megalodon_extras/phase_variants_merge_haploid_variants.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:28:13,097   copying megalodon_extras/calibrate_generate_modified_base_stats.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:28:13,099   copying megalodon_extras/modified_bases_index_database.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:28:13,102   copying megalodon_extras/calibrate_variants.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:28:13,104   copying megalodon_extras/validate_results.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:28:13,122   creating build/lib.linux-armv7l-3.7/megalodon/model_data
2020-09-12T18:28:13,122   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-12T18:28:13,124   copying megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-12T18:28:13,128   copying megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-12T18:28:13,152   copying megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-12T18:28:13,156   copying megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-12T18:28:13,163   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-09-12T18:28:13,164   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-09-12T18:28:13,170   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-09-12T18:28:13,175   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-09-12T18:28:13,175   copying megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-09-12T18:28:13,203   copying megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-09-12T18:28:13,209   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-09-12T18:28:13,210   copying megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-09-12T18:28:13,243   copying megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-09-12T18:28:13,251   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-09-12T18:28:13,252   copying megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-09-12T18:28:13,279   copying megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-09-12T18:28:13,285   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-09-12T18:28:13,286   copying megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-09-12T18:28:13,311   copying megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-09-12T18:28:13,319   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-12T18:28:13,321   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-12T18:28:13,329   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-12T18:28:13,348   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-12T18:28:13,353   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-12T18:28:13,361   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-09-12T18:28:13,363   copying megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-09-12T18:28:13,366   copying megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-09-12T18:28:13,370   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-12T18:28:13,372   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-12T18:28:13,379   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-12T18:28:13,397   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-12T18:28:13,402   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-12T18:28:13,409   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-09-12T18:28:13,411   copying megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-09-12T18:28:13,436   copying megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-09-12T18:28:13,443   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-09-12T18:28:13,444   copying megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-09-12T18:28:13,468   copying megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-09-12T18:28:13,474   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-09-12T18:28:13,475   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-09-12T18:28:13,479   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-09-12T18:28:13,483   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-09-12T18:28:13,484   copying megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-09-12T18:28:13,510   copying megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-09-12T18:28:13,517   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-09-12T18:28:13,518   copying megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-09-12T18:28:13,547   copying megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-09-12T18:28:13,558   running build_ext
2020-09-12T18:28:13,787   cythoning megalodon/_decode.pyx to megalodon/_decode.c
2020-09-12T18:28:16,055   building 'megalodon.decode' extension
2020-09-12T18:28:16,055   creating build/temp.linux-armv7l-3.7
2020-09-12T18:28:16,056   creating build/temp.linux-armv7l-3.7/megalodon
2020-09-12T18:28:16,056   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c megalodon/_decode.c -o build/temp.linux-armv7l-3.7/megalodon/_decode.o -std=c99
2020-09-12T18:28:16,408   In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2020-09-12T18:28:16,408                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2020-09-12T18:28:16,409                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2020-09-12T18:28:16,409                    from megalodon/_decode.c:612:
2020-09-12T18:28:16,409   /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2020-09-12T18:28:16,409    #warning "Using deprecated NumPy API, disable it with " \
2020-09-12T18:28:16,409     ^~~~~~~
2020-09-12T18:28:27,380   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/megalodon/_decode.o -o build/lib.linux-armv7l-3.7/megalodon/decode.cpython-37m-arm-linux-gnueabihf.so
2020-09-12T18:28:27,540   installing to build/bdist.linux-armv7l/wheel
2020-09-12T18:28:27,540   running install
2020-09-12T18:28:27,542   running install_lib
2020-09-12T18:28:27,547   creating build/bdist.linux-armv7l
2020-09-12T18:28:27,547   creating build/bdist.linux-armv7l/wheel
2020-09-12T18:28:27,550   creating build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:28:27,552   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_create_ground_truth.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:28:27,554   copying build/lib.linux-armv7l-3.7/megalodon_extras/variants_resolve.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:28:27,557   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_merge_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:28:27,559   copying build/lib.linux-armv7l-3.7/megalodon_extras/merge_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:28:27,562   copying build/lib.linux-armv7l-3.7/megalodon_extras/__init__.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:28:27,563   copying build/lib.linux-armv7l-3.7/megalodon_extras/validate_aggregated_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:28:27,566   copying build/lib.linux-armv7l-3.7/megalodon_extras/per_read_text_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:28:27,568   copying build/lib.linux-armv7l-3.7/megalodon_extras/variants_index_database.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:28:27,570   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_update_database.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:28:27,572   copying build/lib.linux-armv7l-3.7/megalodon_extras/aggregate_run.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:28:27,574   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_describe_alphabet.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:28:27,576   copying build/lib.linux-armv7l-3.7/megalodon_extras/merge_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:28:27,578   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_estimate_threshold.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:28:27,580   copying build/lib.linux-armv7l-3.7/megalodon_extras/__main__.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:28:27,583   copying build/lib.linux-armv7l-3.7/megalodon_extras/variants_atomize.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:28:27,585   copying build/lib.linux-armv7l-3.7/megalodon_extras/phase_variants_whatshap_filter.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:28:27,587   copying build/lib.linux-armv7l-3.7/megalodon_extras/variants_heterozygous_factor.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:28:27,590   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_generate_variant_stats.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:28:27,593   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_split_by_motif.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:28:27,720   copying build/lib.linux-armv7l-3.7/megalodon_extras/validate_compare_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:28:27,723   copying build/lib.linux-armv7l-3.7/megalodon_extras/_extras_parsers.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:28:27,728   copying build/lib.linux-armv7l-3.7/megalodon_extras/per_read_text_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:28:27,731   copying build/lib.linux-armv7l-3.7/megalodon_extras/phase_variants_extract_haplotype_reads.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:28:27,734   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:28:27,737   copying build/lib.linux-armv7l-3.7/megalodon_extras/phase_variants_merge_haploid_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:28:27,740   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_generate_modified_base_stats.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:28:27,743   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_index_database.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:28:27,745   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:28:27,748   copying build/lib.linux-armv7l-3.7/megalodon_extras/validate_results.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:28:27,752   creating build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:28:27,753   copying build/lib.linux-armv7l-3.7/megalodon/mods.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:28:27,758   copying build/lib.linux-armv7l-3.7/megalodon/__init__.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:28:27,760   copying build/lib.linux-armv7l-3.7/megalodon/backends.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:28:27,764   copying build/lib.linux-armv7l-3.7/megalodon/signal_mapping.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:28:27,766   copying build/lib.linux-armv7l-3.7/megalodon/_version.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:28:27,768   copying build/lib.linux-armv7l-3.7/megalodon/logging.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:28:27,771   copying build/lib.linux-armv7l-3.7/megalodon/variants.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:28:27,777   copying build/lib.linux-armv7l-3.7/megalodon/__main__.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:28:27,780   copying build/lib.linux-armv7l-3.7/megalodon/aggregate.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:28:27,783   copying build/lib.linux-armv7l-3.7/megalodon/megalodon_helper.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:28:27,786   copying build/lib.linux-armv7l-3.7/megalodon/megalodon.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:28:27,791   copying build/lib.linux-armv7l-3.7/megalodon/fast5_io.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:28:27,794   copying build/lib.linux-armv7l-3.7/megalodon/mapping.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:28:27,797   copying build/lib.linux-armv7l-3.7/megalodon/decode.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:28:27,817   copying build/lib.linux-armv7l-3.7/megalodon/calibration.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:28:27,820   copying build/lib.linux-armv7l-3.7/megalodon/megalodon_multiprocessing.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:28:27,823   creating build/bdist.linux-armv7l/wheel/megalodon/model_data
2020-09-12T18:28:27,824   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-12T18:28:27,825   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-12T18:28:27,829   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-12T18:28:27,853   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-12T18:28:27,857   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-12T18:28:27,865   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-09-12T18:28:27,866   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-09-12T18:28:27,873   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-09-12T18:28:27,878   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-09-12T18:28:27,879   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-09-12T18:28:27,899   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-09-12T18:28:27,906   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-09-12T18:28:27,907   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-09-12T18:28:27,931   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-09-12T18:28:27,937   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-09-12T18:28:27,938   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-09-12T18:28:27,966   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-09-12T18:28:27,974   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-09-12T18:28:27,975   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-09-12T18:28:27,999   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-09-12T18:28:28,009   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-12T18:28:28,010   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-12T18:28:28,018   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-12T18:28:28,051   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-12T18:28:28,055   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-12T18:28:28,064   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-09-12T18:28:28,065   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-09-12T18:28:28,068   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-09-12T18:28:28,073   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-12T18:28:28,074   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-12T18:28:28,082   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-12T18:28:28,119   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-12T18:28:28,123   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-12T18:28:28,129   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-09-12T18:28:28,130   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-09-12T18:28:28,149   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-09-12T18:28:28,155   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-09-12T18:28:28,155   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-09-12T18:28:28,180   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-09-12T18:28:28,188   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-09-12T18:28:28,189   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-09-12T18:28:28,192   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-09-12T18:28:28,195   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-09-12T18:28:28,196   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-09-12T18:28:28,221   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-09-12T18:28:28,227   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-09-12T18:28:28,228   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-09-12T18:28:28,254   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-09-12T18:28:28,260   running install_egg_info
2020-09-12T18:28:28,281   running egg_info
2020-09-12T18:28:28,281   writing megalodon.egg-info/PKG-INFO
2020-09-12T18:28:28,284   writing dependency_links to megalodon.egg-info/dependency_links.txt
2020-09-12T18:28:28,286   writing entry points to megalodon.egg-info/entry_points.txt
2020-09-12T18:28:28,287   writing requirements to megalodon.egg-info/requires.txt
2020-09-12T18:28:28,288   writing top-level names to megalodon.egg-info/top_level.txt
2020-09-12T18:28:28,312   reading manifest file 'megalodon.egg-info/SOURCES.txt'
2020-09-12T18:28:28,317   reading manifest template 'MANIFEST.in'
2020-09-12T18:28:28,328   writing manifest file 'megalodon.egg-info/SOURCES.txt'
2020-09-12T18:28:28,330   Copying megalodon.egg-info to build/bdist.linux-armv7l/wheel/megalodon-2.2.0-py3.7.egg-info
2020-09-12T18:28:28,348   running install_scripts
2020-09-12T18:28:28,412   adding license file "LICENCE.txt" (matched pattern "LICEN[CS]E*")
2020-09-12T18:28:28,420   creating build/bdist.linux-armv7l/wheel/megalodon-2.2.0.dist-info/WHEEL
2020-09-12T18:28:28,423   creating '/tmp/pip-wheel-_pdslbpe/megalodon-2.2.0-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-09-12T18:28:28,426   adding 'megalodon/__init__.py'
2020-09-12T18:28:28,430   adding 'megalodon/__main__.py'
2020-09-12T18:28:28,431   adding 'megalodon/_version.py'
2020-09-12T18:28:28,442   adding 'megalodon/aggregate.py'
2020-09-12T18:28:28,447   adding 'megalodon/backends.py'
2020-09-12T18:28:28,450   adding 'megalodon/calibration.py'
2020-09-12T18:28:28,571   adding 'megalodon/decode.cpython-37m-arm-linux-gnueabihf.so'
2020-09-12T18:28:28,577   adding 'megalodon/fast5_io.py'
2020-09-12T18:28:28,578   adding 'megalodon/logging.py'
2020-09-12T18:28:28,580   adding 'megalodon/mapping.py'
2020-09-12T18:28:28,587   adding 'megalodon/megalodon.py'
2020-09-12T18:28:28,591   adding 'megalodon/megalodon_helper.py'
2020-09-12T18:28:28,592   adding 'megalodon/megalodon_multiprocessing.py'
2020-09-12T18:28:28,603   adding 'megalodon/mods.py'
2020-09-12T18:28:28,605   adding 'megalodon/signal_mapping.py'
2020-09-12T18:28:28,615   adding 'megalodon/variants.py'
2020-09-12T18:28:28,676   adding 'megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.npz'
2020-09-12T18:28:28,702   adding 'megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.pdf'
2020-09-12T18:28:28,752   adding 'megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.npz'
2020-09-12T18:28:28,779   adding 'megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf'
2020-09-12T18:28:28,826   adding 'megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.npz'
2020-09-12T18:28:28,853   adding 'megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.pdf'
2020-09-12T18:28:28,904   adding 'megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.npz'
2020-09-12T18:28:28,930   adding 'megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf'
2020-09-12T18:28:28,988   adding 'megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.npz'
2020-09-12T18:28:29,015   adding 'megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.pdf'
2020-09-12T18:28:29,070   adding 'megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.npz'
2020-09-12T18:28:29,096   adding 'megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf'
2020-09-12T18:28:29,155   adding 'megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.npz'
2020-09-12T18:28:29,182   adding 'megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.pdf'
2020-09-12T18:28:29,232   adding 'megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.npz'
2020-09-12T18:28:29,259   adding 'megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf'
2020-09-12T18:28:29,269   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.npz'
2020-09-12T18:28:29,289   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.pdf'
2020-09-12T18:28:29,346   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.npz'
2020-09-12T18:28:29,378   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.pdf'
2020-09-12T18:28:29,388   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.npz'
2020-09-12T18:28:29,409   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.pdf'
2020-09-12T18:28:29,463   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.npz'
2020-09-12T18:28:29,492   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.pdf'
2020-09-12T18:28:29,500   adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.npz'
2020-09-12T18:28:29,504   adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.pdf'
2020-09-12T18:28:29,549   adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.npz'
2020-09-12T18:28:29,575   adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.pdf'
2020-09-12T18:28:29,585   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.npz'
2020-09-12T18:28:29,605   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.pdf'
2020-09-12T18:28:29,611   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz'
2020-09-12T18:28:29,614   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf'
2020-09-12T18:28:29,618   adding 'megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz'
2020-09-12T18:28:29,621   adding 'megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf'
2020-09-12T18:28:29,624   adding 'megalodon_extras/__init__.py'
2020-09-12T18:28:29,626   adding 'megalodon_extras/__main__.py'
2020-09-12T18:28:29,629   adding 'megalodon_extras/_extras_parsers.py'
2020-09-12T18:28:29,631   adding 'megalodon_extras/aggregate_run.py'
2020-09-12T18:28:29,632   adding 'megalodon_extras/calibrate_generate_modified_base_stats.py'
2020-09-12T18:28:29,634   adding 'megalodon_extras/calibrate_generate_variant_stats.py'
2020-09-12T18:28:29,636   adding 'megalodon_extras/calibrate_merge_modified_bases.py'
2020-09-12T18:28:29,637   adding 'megalodon_extras/calibrate_modified_bases.py'
2020-09-12T18:28:29,639   adding 'megalodon_extras/calibrate_variants.py'
2020-09-12T18:28:29,641   adding 'megalodon_extras/merge_modified_bases.py'
2020-09-12T18:28:29,642   adding 'megalodon_extras/merge_variants.py'
2020-09-12T18:28:29,643   adding 'megalodon_extras/modified_bases_create_ground_truth.py'
2020-09-12T18:28:29,644   adding 'megalodon_extras/modified_bases_describe_alphabet.py'
2020-09-12T18:28:29,645   adding 'megalodon_extras/modified_bases_estimate_threshold.py'
2020-09-12T18:28:29,647   adding 'megalodon_extras/modified_bases_index_database.py'
2020-09-12T18:28:29,648   adding 'megalodon_extras/modified_bases_split_by_motif.py'
2020-09-12T18:28:29,649   adding 'megalodon_extras/modified_bases_update_database.py'
2020-09-12T18:28:29,651   adding 'megalodon_extras/per_read_text_modified_bases.py'
2020-09-12T18:28:29,652   adding 'megalodon_extras/per_read_text_variants.py'
2020-09-12T18:28:29,653   adding 'megalodon_extras/phase_variants_extract_haplotype_reads.py'
2020-09-12T18:28:29,655   adding 'megalodon_extras/phase_variants_merge_haploid_variants.py'
2020-09-12T18:28:29,656   adding 'megalodon_extras/phase_variants_whatshap_filter.py'
2020-09-12T18:28:29,658   adding 'megalodon_extras/validate_aggregated_modified_bases.py'
2020-09-12T18:28:29,660   adding 'megalodon_extras/validate_compare_modified_bases.py'
2020-09-12T18:28:29,662   adding 'megalodon_extras/validate_results.py'
2020-09-12T18:28:29,663   adding 'megalodon_extras/variants_atomize.py'
2020-09-12T18:28:29,665   adding 'megalodon_extras/variants_heterozygous_factor.py'
2020-09-12T18:28:29,666   adding 'megalodon_extras/variants_index_database.py'
2020-09-12T18:28:29,668   adding 'megalodon_extras/variants_resolve.py'
2020-09-12T18:28:29,670   adding 'megalodon-2.2.0.dist-info/LICENCE.txt'
2020-09-12T18:28:29,672   adding 'megalodon-2.2.0.dist-info/METADATA'
2020-09-12T18:28:29,673   adding 'megalodon-2.2.0.dist-info/WHEEL'
2020-09-12T18:28:29,674   adding 'megalodon-2.2.0.dist-info/entry_points.txt'
2020-09-12T18:28:29,674   adding 'megalodon-2.2.0.dist-info/top_level.txt'
2020-09-12T18:28:29,676   adding 'megalodon-2.2.0.dist-info/RECORD'
2020-09-12T18:28:29,770   removing build/bdist.linux-armv7l/wheel
2020-09-12T18:28:30,084   Building wheel for megalodon (setup.py): finished with status 'done'
2020-09-12T18:28:30,155   Created wheel for megalodon: filename=megalodon-2.2.0-cp37-cp37m-linux_armv7l.whl size=6729646 sha256=61c412c853d705992ae8b09a54d7b78dccb7604e4108d56e4c1a700563e71252
2020-09-12T18:28:30,155   Stored in directory: /tmp/pip-ephem-wheel-cache-oqf78w8o/wheels/1a/ed/14/435ece5f95edab2217462ee8a5e4f20965f975bc3872d777bb
2020-09-12T18:28:30,157 Successfully built megalodon
2020-09-12T18:28:30,372 Removed build tracker: '/tmp/pip-req-tracker-30hkw56f'