2020-09-12T18:35:45,923 Created temporary directory: /tmp/pip-ephem-wheel-cache-3bswyw7l
2020-09-12T18:35:45,926 Created temporary directory: /tmp/pip-req-tracker-p5s6cxcn
2020-09-12T18:35:45,927 Initialized build tracking at /tmp/pip-req-tracker-p5s6cxcn
2020-09-12T18:35:45,927 Created build tracker: /tmp/pip-req-tracker-p5s6cxcn
2020-09-12T18:35:45,927 Entered build tracker: /tmp/pip-req-tracker-p5s6cxcn
2020-09-12T18:35:45,928 Created temporary directory: /tmp/pip-wheel-hkccf_b0
2020-09-12T18:35:45,936 1 location(s) to search for versions of megalodon:
2020-09-12T18:35:45,936 * https://pypi.org/simple/megalodon/
2020-09-12T18:35:45,936 Fetching project page and analyzing links: https://pypi.org/simple/megalodon/
2020-09-12T18:35:45,937 Getting page https://pypi.org/simple/megalodon/
2020-09-12T18:35:45,938 Found index url https://pypi.org/simple
2020-09-12T18:35:46,042   Skipping link: none of the wheel's tags match: cp37-cp37m-macosx_10_14_x86_64: https://files.pythonhosted.org/packages/fe/5f/fc169f4470c2ab9a3d0dcf7b0eba0752a950494eb6587cbe3425724bcbaa/megalodon-1.0.0-cp37-cp37m-macosx_10_14_x86_64.whl#sha256=de244047d7a7d1f08a86fbed509d20eeed709187f84e765d9b9a4f5359364a30 (from https://pypi.org/simple/megalodon/)
2020-09-12T18:35:46,042   Found link https://files.pythonhosted.org/packages/9b/94/e9a546cb3958043d7378b0d1b5eebe01ca3923db3de08a10ef230e27dff5/megalodon-1.0.0.tar.gz#sha256=a547c80eb95763ecf13fed66023953fa8fe6c98082e9e249ef0f859772f01ccc (from https://pypi.org/simple/megalodon/), version: 1.0.0
2020-09-12T18:35:46,043   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/15/da/db7e0d83c7237552d45289530e9418d460c7a994f0d2b6a1735f98f62ecf/megalodon-2.0.0-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=bcea1352257f402f82787a2494ebc02f35503c15edd739fe8663f1417447be13 (from https://pypi.org/simple/megalodon/)
2020-09-12T18:35:46,043   Found link https://files.pythonhosted.org/packages/1d/e0/6a40deaac257dacfb2c31c056b37abd76e8ddfc8e852ea5117cb3d67b220/megalodon-2.0.0.tar.gz#sha256=28deb452ba87cfdf116bcdbc2e6335ab3220d363a7f545594d43c60cf8e9040c (from https://pypi.org/simple/megalodon/), version: 2.0.0
2020-09-12T18:35:46,044   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/33/7c/bfd056d9b7d5a618f61d28fe44d2402a16b6a959f9a30cd13f8dc7046e4c/megalodon-2.1.0-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=1052edf69302c8d018bdde48d6673c03364255acdfde0aa9938997fee66f7fbe (from https://pypi.org/simple/megalodon/)
2020-09-12T18:35:46,044   Found link https://files.pythonhosted.org/packages/aa/cc/b3c81dc70660c4e043180ea7535b8b42dd8724cddd784dbeb039ff2bf0c5/megalodon-2.1.0.tar.gz#sha256=1e6db96a9d14a1041b435f4cf0fdd19a0809490efd4c2d4dae7eeaa2423db3a3 (from https://pypi.org/simple/megalodon/), version: 2.1.0
2020-09-12T18:35:46,044   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/82/eb/8a50a84306188acf8c4dc1855184d652e6497a11343769b2d6b474a96d66/megalodon-2.2.0-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=d138a85f21444a1105bc8c056b92e44a3866692291d7af3d76f87dcab8f986b1 (from https://pypi.org/simple/megalodon/)
2020-09-12T18:35:46,045   Found link https://files.pythonhosted.org/packages/74/a9/32eb1037cb5e427a433a648e02fd0e3e137d8803320858190e7b2fec74a7/megalodon-2.2.0.tar.gz#sha256=0f057644f21ce76ea8b50625e297c9f9449e0710a9423387c4d7da43b4e13115 (from https://pypi.org/simple/megalodon/), version: 2.2.0
2020-09-12T18:35:46,045   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/82/27/2831a1d28162814e76b2e8a11fce724981e8859d1bc01f6466c242c4aca8/megalodon-2.2.1-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=2cad064accda0a6aef3ac728fc3a1bdd4016145eb16cb322b542b0312cdb5cd5 (from https://pypi.org/simple/megalodon/)
2020-09-12T18:35:46,045   Found link https://files.pythonhosted.org/packages/af/83/f12260694514be27333adb79165bc3958b59909eb21495b918a98e0e6f07/megalodon-2.2.1.tar.gz#sha256=33f3fdeae806a34fc9a0e2b3cb5b4d5bf7c1822c6eb00f9ed8a3cd2fb1327ef7 (from https://pypi.org/simple/megalodon/), version: 2.2.1
2020-09-12T18:35:46,046 Given no hashes to check 1 links for project 'megalodon': discarding no candidates
2020-09-12T18:35:46,047 Using version 2.2.1 (newest of versions: 2.2.1)
2020-09-12T18:35:46,050 Collecting megalodon==2.2.1
2020-09-12T18:35:46,053   Created temporary directory: /tmp/pip-unpack-ys0op5bh
2020-09-12T18:35:46,094   Downloading megalodon-2.2.1.tar.gz (6.5 MB)
2020-09-12T18:35:47,761   Added megalodon==2.2.1 from https://files.pythonhosted.org/packages/af/83/f12260694514be27333adb79165bc3958b59909eb21495b918a98e0e6f07/megalodon-2.2.1.tar.gz#sha256=33f3fdeae806a34fc9a0e2b3cb5b4d5bf7c1822c6eb00f9ed8a3cd2fb1327ef7 to build tracker '/tmp/pip-req-tracker-p5s6cxcn'
2020-09-12T18:35:47,762     Running setup.py (path:/tmp/pip-wheel-hkccf_b0/megalodon/setup.py) egg_info for package megalodon
2020-09-12T18:35:47,763     Created temporary directory: /tmp/pip-pip-egg-info-u5nuzkcr
2020-09-12T18:35:47,763     Running command python setup.py egg_info
2020-09-12T18:35:48,938     running egg_info
2020-09-12T18:35:48,940     creating /tmp/pip-pip-egg-info-u5nuzkcr/megalodon.egg-info
2020-09-12T18:35:48,941     writing /tmp/pip-pip-egg-info-u5nuzkcr/megalodon.egg-info/PKG-INFO
2020-09-12T18:35:48,945     writing dependency_links to /tmp/pip-pip-egg-info-u5nuzkcr/megalodon.egg-info/dependency_links.txt
2020-09-12T18:35:48,947     writing entry points to /tmp/pip-pip-egg-info-u5nuzkcr/megalodon.egg-info/entry_points.txt
2020-09-12T18:35:48,948     writing requirements to /tmp/pip-pip-egg-info-u5nuzkcr/megalodon.egg-info/requires.txt
2020-09-12T18:35:48,949     writing top-level names to /tmp/pip-pip-egg-info-u5nuzkcr/megalodon.egg-info/top_level.txt
2020-09-12T18:35:48,950     writing manifest file '/tmp/pip-pip-egg-info-u5nuzkcr/megalodon.egg-info/SOURCES.txt'
2020-09-12T18:35:49,311     reading manifest file '/tmp/pip-pip-egg-info-u5nuzkcr/megalodon.egg-info/SOURCES.txt'
2020-09-12T18:35:49,313     reading manifest template 'MANIFEST.in'
2020-09-12T18:35:49,318     writing manifest file '/tmp/pip-pip-egg-info-u5nuzkcr/megalodon.egg-info/SOURCES.txt'
2020-09-12T18:35:49,418   Source in /tmp/pip-wheel-hkccf_b0/megalodon has version 2.2.1, which satisfies requirement megalodon==2.2.1 from https://files.pythonhosted.org/packages/af/83/f12260694514be27333adb79165bc3958b59909eb21495b918a98e0e6f07/megalodon-2.2.1.tar.gz#sha256=33f3fdeae806a34fc9a0e2b3cb5b4d5bf7c1822c6eb00f9ed8a3cd2fb1327ef7
2020-09-12T18:35:49,419   Removed megalodon==2.2.1 from https://files.pythonhosted.org/packages/af/83/f12260694514be27333adb79165bc3958b59909eb21495b918a98e0e6f07/megalodon-2.2.1.tar.gz#sha256=33f3fdeae806a34fc9a0e2b3cb5b4d5bf7c1822c6eb00f9ed8a3cd2fb1327ef7 from build tracker '/tmp/pip-req-tracker-p5s6cxcn'
2020-09-12T18:35:49,423 Building wheels for collected packages: megalodon
2020-09-12T18:35:49,427   Created temporary directory: /tmp/pip-wheel-c40twtac
2020-09-12T18:35:49,428   Building wheel for megalodon (setup.py): started
2020-09-12T18:35:49,428   Destination directory: /tmp/pip-wheel-c40twtac
2020-09-12T18:35:49,429   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-hkccf_b0/megalodon/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-hkccf_b0/megalodon/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-c40twtac
2020-09-12T18:35:50,564   running bdist_wheel
2020-09-12T18:35:50,570   running build
2020-09-12T18:35:50,571   running build_py
2020-09-12T18:35:50,695   creating build
2020-09-12T18:35:50,695   creating build/lib.linux-armv7l-3.7
2020-09-12T18:35:50,696   creating build/lib.linux-armv7l-3.7/megalodon
2020-09-12T18:35:50,697   copying megalodon/logging.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T18:35:50,699   copying megalodon/__init__.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T18:35:50,700   copying megalodon/signal_mapping.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T18:35:50,702   copying megalodon/_version.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T18:35:50,704   copying megalodon/megalodon_multiprocessing.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T18:35:50,706   copying megalodon/aggregate.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T18:35:50,708   copying megalodon/fast5_io.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T18:35:50,710   copying megalodon/backends.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T18:35:50,713   copying megalodon/__main__.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T18:35:50,716   copying megalodon/variants.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T18:35:50,721   copying megalodon/mapping.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T18:35:50,724   copying megalodon/megalodon.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T18:35:50,728   copying megalodon/calibration.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T18:35:50,731   copying megalodon/mods.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T18:35:50,736   copying megalodon/megalodon_helper.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-12T18:35:50,741   creating build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:35:50,742   copying megalodon_extras/__init__.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:35:50,745   copying megalodon_extras/phase_variants_extract_haplotype_reads.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:35:50,747   copying megalodon_extras/modified_bases_update_database.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:35:50,750   copying megalodon_extras/phase_variants_whatshap_filter.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:35:50,752   copying megalodon_extras/per_read_text_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:35:50,755   copying megalodon_extras/validate_results.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:35:50,758   copying megalodon_extras/modified_bases_create_ground_truth.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:35:50,760   copying megalodon_extras/variants_atomize.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:35:50,763   copying megalodon_extras/modified_bases_index_database.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:35:50,765   copying megalodon_extras/merge_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:35:50,768   copying megalodon_extras/__main__.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:35:50,771   copying megalodon_extras/calibrate_generate_variant_stats.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:35:50,774   copying megalodon_extras/variants_resolve.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:35:50,777   copying megalodon_extras/validate_compare_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:35:50,779   copying megalodon_extras/aggregate_run.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:35:50,782   copying megalodon_extras/variants_heterozygous_factor.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:35:50,785   copying megalodon_extras/modified_bases_split_by_motif.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:35:50,787   copying megalodon_extras/modified_bases_describe_alphabet.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:35:50,790   copying megalodon_extras/calibrate_variants.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:35:50,793   copying megalodon_extras/phase_variants_merge_haploid_variants.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:35:50,796   copying megalodon_extras/validate_aggregated_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:35:50,799   copying megalodon_extras/per_read_text_variants.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:35:50,801   copying megalodon_extras/calibrate_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:35:50,804   copying megalodon_extras/_extras_parsers.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:35:50,808   copying megalodon_extras/merge_variants.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:35:50,810   copying megalodon_extras/calibrate_generate_modified_base_stats.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:35:50,813   copying megalodon_extras/calibrate_merge_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:35:50,815   copying megalodon_extras/modified_bases_estimate_threshold.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:35:50,817   copying megalodon_extras/variants_index_database.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-12T18:35:50,833   creating build/lib.linux-armv7l-3.7/megalodon/model_data
2020-09-12T18:35:50,834   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-12T18:35:50,836   copying megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-12T18:35:50,840   copying megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-12T18:35:50,846   copying megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-12T18:35:50,869   copying megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-12T18:35:50,872   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-09-12T18:35:50,873   copying megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-09-12T18:35:50,881   copying megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-09-12T18:35:50,904   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-09-12T18:35:50,905   copying megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-09-12T18:35:50,914   copying megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-09-12T18:35:50,943   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-09-12T18:35:50,945   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-09-12T18:35:50,950   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-09-12T18:35:50,959   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-09-12T18:35:50,960   copying megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-09-12T18:35:50,968   copying megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-09-12T18:35:50,994   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-12T18:35:50,995   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-12T18:35:51,000   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-12T18:35:51,007   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-12T18:35:51,030   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-12T18:35:51,038   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-09-12T18:35:51,039   copying megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-09-12T18:35:51,048   copying megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-09-12T18:35:51,074   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-09-12T18:35:51,075   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-09-12T18:35:51,080   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-09-12T18:35:51,083   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-09-12T18:35:51,084   copying megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-09-12T18:35:51,091   copying megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-09-12T18:35:51,111   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-12T18:35:51,112   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-12T18:35:51,117   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-12T18:35:51,125   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-12T18:35:51,150   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-12T18:35:51,158   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-09-12T18:35:51,159   copying megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-09-12T18:35:51,163   copying megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-09-12T18:35:51,166   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-09-12T18:35:51,168   copying megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-09-12T18:35:51,176   copying megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-09-12T18:35:51,202   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-09-12T18:35:51,203   copying megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-09-12T18:35:51,211   copying megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-09-12T18:35:51,232   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-09-12T18:35:51,234   copying megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-09-12T18:35:51,240   copying megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-09-12T18:35:51,261   running build_ext
2020-09-12T18:35:51,461   cythoning megalodon/_decode.pyx to megalodon/_decode.c
2020-09-12T18:35:53,723   building 'megalodon.decode' extension
2020-09-12T18:35:53,724   creating build/temp.linux-armv7l-3.7
2020-09-12T18:35:53,724   creating build/temp.linux-armv7l-3.7/megalodon
2020-09-12T18:35:53,725   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c megalodon/_decode.c -o build/temp.linux-armv7l-3.7/megalodon/_decode.o -std=c99
2020-09-12T18:35:54,085   In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2020-09-12T18:35:54,085                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2020-09-12T18:35:54,085                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2020-09-12T18:35:54,085                    from megalodon/_decode.c:612:
2020-09-12T18:35:54,086   /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2020-09-12T18:35:54,086    #warning "Using deprecated NumPy API, disable it with " \
2020-09-12T18:35:54,086     ^~~~~~~
2020-09-12T18:36:04,162   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/megalodon/_decode.o -o build/lib.linux-armv7l-3.7/megalodon/decode.cpython-37m-arm-linux-gnueabihf.so
2020-09-12T18:36:04,317   installing to build/bdist.linux-armv7l/wheel
2020-09-12T18:36:04,318   running install
2020-09-12T18:36:04,319   running install_lib
2020-09-12T18:36:04,323   creating build/bdist.linux-armv7l
2020-09-12T18:36:04,324   creating build/bdist.linux-armv7l/wheel
2020-09-12T18:36:04,327   creating build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:36:04,328   copying build/lib.linux-armv7l-3.7/megalodon/logging.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:36:04,331   copying build/lib.linux-armv7l-3.7/megalodon/__init__.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:36:04,333   copying build/lib.linux-armv7l-3.7/megalodon/signal_mapping.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:36:04,335   copying build/lib.linux-armv7l-3.7/megalodon/_version.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:36:04,338   copying build/lib.linux-armv7l-3.7/megalodon/decode.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:36:04,354   copying build/lib.linux-armv7l-3.7/megalodon/megalodon_multiprocessing.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:36:04,358   creating build/bdist.linux-armv7l/wheel/megalodon/model_data
2020-09-12T18:36:04,359   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-12T18:36:04,361   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-12T18:36:04,366   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-12T18:36:04,374   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-12T18:36:04,407   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-12T18:36:04,411   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-09-12T18:36:04,412   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-09-12T18:36:04,418   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-09-12T18:36:04,439   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-09-12T18:36:04,440   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-09-12T18:36:04,448   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-09-12T18:36:04,474   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-09-12T18:36:04,475   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-09-12T18:36:04,479   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-09-12T18:36:04,485   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-09-12T18:36:04,486   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-09-12T18:36:04,493   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-09-12T18:36:04,518   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-12T18:36:04,519   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-12T18:36:04,523   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-12T18:36:04,530   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-12T18:36:04,551   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-12T18:36:04,557   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-09-12T18:36:04,559   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-09-12T18:36:04,567   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-09-12T18:36:04,594   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-09-12T18:36:04,595   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-09-12T18:36:04,599   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-09-12T18:36:04,603   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-09-12T18:36:04,604   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-09-12T18:36:04,610   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-09-12T18:36:04,635   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-12T18:36:04,636   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-12T18:36:04,640   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-12T18:36:04,647   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-12T18:36:04,677   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-12T18:36:04,684   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-09-12T18:36:04,686   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-09-12T18:36:04,689   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-09-12T18:36:04,693   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-09-12T18:36:04,694   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-09-12T18:36:04,703   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-09-12T18:36:04,730   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-09-12T18:36:04,731   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-09-12T18:36:04,740   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-09-12T18:36:04,761   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-09-12T18:36:04,763   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-09-12T18:36:04,770   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-09-12T18:36:04,795   copying build/lib.linux-armv7l-3.7/megalodon/aggregate.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:36:04,798   copying build/lib.linux-armv7l-3.7/megalodon/fast5_io.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:36:04,801   copying build/lib.linux-armv7l-3.7/megalodon/backends.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:36:04,804   copying build/lib.linux-armv7l-3.7/megalodon/__main__.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:36:04,808   copying build/lib.linux-armv7l-3.7/megalodon/variants.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:36:04,812   copying build/lib.linux-armv7l-3.7/megalodon/mapping.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:36:04,816   copying build/lib.linux-armv7l-3.7/megalodon/megalodon.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:36:04,820   copying build/lib.linux-armv7l-3.7/megalodon/calibration.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:36:04,824   copying build/lib.linux-armv7l-3.7/megalodon/mods.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:36:04,830   copying build/lib.linux-armv7l-3.7/megalodon/megalodon_helper.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-12T18:36:04,836   creating build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:36:04,837   copying build/lib.linux-armv7l-3.7/megalodon_extras/__init__.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:36:04,840   copying build/lib.linux-armv7l-3.7/megalodon_extras/phase_variants_extract_haplotype_reads.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:36:04,843   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_update_database.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:36:04,846   copying build/lib.linux-armv7l-3.7/megalodon_extras/phase_variants_whatshap_filter.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:36:04,850   copying build/lib.linux-armv7l-3.7/megalodon_extras/per_read_text_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:36:04,853   copying build/lib.linux-armv7l-3.7/megalodon_extras/validate_results.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:36:04,857   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_create_ground_truth.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:36:04,860   copying build/lib.linux-armv7l-3.7/megalodon_extras/variants_atomize.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:36:04,863   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_index_database.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:36:04,866   copying build/lib.linux-armv7l-3.7/megalodon_extras/merge_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:36:04,870   copying build/lib.linux-armv7l-3.7/megalodon_extras/__main__.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:36:04,873   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_generate_variant_stats.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:36:04,876   copying build/lib.linux-armv7l-3.7/megalodon_extras/variants_resolve.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:36:04,880   copying build/lib.linux-armv7l-3.7/megalodon_extras/validate_compare_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:36:04,883   copying build/lib.linux-armv7l-3.7/megalodon_extras/aggregate_run.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:36:04,886   copying build/lib.linux-armv7l-3.7/megalodon_extras/variants_heterozygous_factor.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:36:04,890   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_split_by_motif.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:36:04,894   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_describe_alphabet.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:36:04,897   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:36:04,900   copying build/lib.linux-armv7l-3.7/megalodon_extras/phase_variants_merge_haploid_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:36:04,904   copying build/lib.linux-armv7l-3.7/megalodon_extras/validate_aggregated_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:36:04,907   copying build/lib.linux-armv7l-3.7/megalodon_extras/per_read_text_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:36:04,910   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:36:04,914   copying build/lib.linux-armv7l-3.7/megalodon_extras/_extras_parsers.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:36:04,918   copying build/lib.linux-armv7l-3.7/megalodon_extras/merge_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:36:04,921   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_generate_modified_base_stats.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:36:04,925   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_merge_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:36:04,928   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_estimate_threshold.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:36:04,931   copying build/lib.linux-armv7l-3.7/megalodon_extras/variants_index_database.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-12T18:36:04,933   running install_egg_info
2020-09-12T18:36:04,967   running egg_info
2020-09-12T18:36:04,968   writing megalodon.egg-info/PKG-INFO
2020-09-12T18:36:04,971   writing dependency_links to megalodon.egg-info/dependency_links.txt
2020-09-12T18:36:04,974   writing entry points to megalodon.egg-info/entry_points.txt
2020-09-12T18:36:04,975   writing requirements to megalodon.egg-info/requires.txt
2020-09-12T18:36:04,977   writing top-level names to megalodon.egg-info/top_level.txt
2020-09-12T18:36:05,001   reading manifest file 'megalodon.egg-info/SOURCES.txt'
2020-09-12T18:36:05,006   reading manifest template 'MANIFEST.in'
2020-09-12T18:36:05,017   writing manifest file 'megalodon.egg-info/SOURCES.txt'
2020-09-12T18:36:05,020   Copying megalodon.egg-info to build/bdist.linux-armv7l/wheel/megalodon-2.2.1-py3.7.egg-info
2020-09-12T18:36:05,039   running install_scripts
2020-09-12T18:36:05,104   adding license file "LICENCE.txt" (matched pattern "LICEN[CS]E*")
2020-09-12T18:36:05,113   creating build/bdist.linux-armv7l/wheel/megalodon-2.2.1.dist-info/WHEEL
2020-09-12T18:36:05,117   creating '/tmp/pip-wheel-c40twtac/megalodon-2.2.1-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-09-12T18:36:05,121   adding 'megalodon/__init__.py'
2020-09-12T18:36:05,125   adding 'megalodon/__main__.py'
2020-09-12T18:36:05,127   adding 'megalodon/_version.py'
2020-09-12T18:36:05,130   adding 'megalodon/aggregate.py'
2020-09-12T18:36:05,136   adding 'megalodon/backends.py'
2020-09-12T18:36:05,140   adding 'megalodon/calibration.py'
2020-09-12T18:36:05,255   adding 'megalodon/decode.cpython-37m-arm-linux-gnueabihf.so'
2020-09-12T18:36:05,261   adding 'megalodon/fast5_io.py'
2020-09-12T18:36:05,262   adding 'megalodon/logging.py'
2020-09-12T18:36:05,265   adding 'megalodon/mapping.py'
2020-09-12T18:36:05,273   adding 'megalodon/megalodon.py'
2020-09-12T18:36:05,277   adding 'megalodon/megalodon_helper.py'
2020-09-12T18:36:05,279   adding 'megalodon/megalodon_multiprocessing.py'
2020-09-12T18:36:05,290   adding 'megalodon/mods.py'
2020-09-12T18:36:05,292   adding 'megalodon/signal_mapping.py'
2020-09-12T18:36:05,303   adding 'megalodon/variants.py'
2020-09-12T18:36:05,365   adding 'megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.npz'
2020-09-12T18:36:05,391   adding 'megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.pdf'
2020-09-12T18:36:05,441   adding 'megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.npz'
2020-09-12T18:36:05,470   adding 'megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf'
2020-09-12T18:36:05,518   adding 'megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.npz'
2020-09-12T18:36:05,546   adding 'megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.pdf'
2020-09-12T18:36:05,598   adding 'megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.npz'
2020-09-12T18:36:05,626   adding 'megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf'
2020-09-12T18:36:05,685   adding 'megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.npz'
2020-09-12T18:36:05,712   adding 'megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.pdf'
2020-09-12T18:36:05,768   adding 'megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.npz'
2020-09-12T18:36:05,795   adding 'megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf'
2020-09-12T18:36:05,855   adding 'megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.npz'
2020-09-12T18:36:05,883   adding 'megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.pdf'
2020-09-12T18:36:05,934   adding 'megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.npz'
2020-09-12T18:36:05,962   adding 'megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf'
2020-09-12T18:36:05,972   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.npz'
2020-09-12T18:36:05,994   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.pdf'
2020-09-12T18:36:06,051   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.npz'
2020-09-12T18:36:06,081   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.pdf'
2020-09-12T18:36:06,092   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.npz'
2020-09-12T18:36:06,114   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.pdf'
2020-09-12T18:36:06,179   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.npz'
2020-09-12T18:36:06,208   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.pdf'
2020-09-12T18:36:06,217   adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.npz'
2020-09-12T18:36:06,221   adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.pdf'
2020-09-12T18:36:06,266   adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.npz'
2020-09-12T18:36:06,294   adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.pdf'
2020-09-12T18:36:06,303   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.npz'
2020-09-12T18:36:06,324   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.pdf'
2020-09-12T18:36:06,330   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz'
2020-09-12T18:36:06,333   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf'
2020-09-12T18:36:06,337   adding 'megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz'
2020-09-12T18:36:06,340   adding 'megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf'
2020-09-12T18:36:06,343   adding 'megalodon_extras/__init__.py'
2020-09-12T18:36:06,345   adding 'megalodon_extras/__main__.py'
2020-09-12T18:36:06,348   adding 'megalodon_extras/_extras_parsers.py'
2020-09-12T18:36:06,350   adding 'megalodon_extras/aggregate_run.py'
2020-09-12T18:36:06,351   adding 'megalodon_extras/calibrate_generate_modified_base_stats.py'
2020-09-12T18:36:06,353   adding 'megalodon_extras/calibrate_generate_variant_stats.py'
2020-09-12T18:36:06,355   adding 'megalodon_extras/calibrate_merge_modified_bases.py'
2020-09-12T18:36:06,356   adding 'megalodon_extras/calibrate_modified_bases.py'
2020-09-12T18:36:06,358   adding 'megalodon_extras/calibrate_variants.py'
2020-09-12T18:36:06,360   adding 'megalodon_extras/merge_modified_bases.py'
2020-09-12T18:36:06,361   adding 'megalodon_extras/merge_variants.py'
2020-09-12T18:36:06,362   adding 'megalodon_extras/modified_bases_create_ground_truth.py'
2020-09-12T18:36:06,363   adding 'megalodon_extras/modified_bases_describe_alphabet.py'
2020-09-12T18:36:06,365   adding 'megalodon_extras/modified_bases_estimate_threshold.py'
2020-09-12T18:36:06,366   adding 'megalodon_extras/modified_bases_index_database.py'
2020-09-12T18:36:06,367   adding 'megalodon_extras/modified_bases_split_by_motif.py'
2020-09-12T18:36:06,368   adding 'megalodon_extras/modified_bases_update_database.py'
2020-09-12T18:36:06,369   adding 'megalodon_extras/per_read_text_modified_bases.py'
2020-09-12T18:36:06,371   adding 'megalodon_extras/per_read_text_variants.py'
2020-09-12T18:36:06,372   adding 'megalodon_extras/phase_variants_extract_haplotype_reads.py'
2020-09-12T18:36:06,374   adding 'megalodon_extras/phase_variants_merge_haploid_variants.py'
2020-09-12T18:36:06,375   adding 'megalodon_extras/phase_variants_whatshap_filter.py'
2020-09-12T18:36:06,377   adding 'megalodon_extras/validate_aggregated_modified_bases.py'
2020-09-12T18:36:06,378   adding 'megalodon_extras/validate_compare_modified_bases.py'
2020-09-12T18:36:06,381   adding 'megalodon_extras/validate_results.py'
2020-09-12T18:36:06,382   adding 'megalodon_extras/variants_atomize.py'
2020-09-12T18:36:06,383   adding 'megalodon_extras/variants_heterozygous_factor.py'
2020-09-12T18:36:06,385   adding 'megalodon_extras/variants_index_database.py'
2020-09-12T18:36:06,386   adding 'megalodon_extras/variants_resolve.py'
2020-09-12T18:36:06,389   adding 'megalodon-2.2.1.dist-info/LICENCE.txt'
2020-09-12T18:36:06,390   adding 'megalodon-2.2.1.dist-info/METADATA'
2020-09-12T18:36:06,391   adding 'megalodon-2.2.1.dist-info/WHEEL'
2020-09-12T18:36:06,392   adding 'megalodon-2.2.1.dist-info/entry_points.txt'
2020-09-12T18:36:06,393   adding 'megalodon-2.2.1.dist-info/top_level.txt'
2020-09-12T18:36:06,394   adding 'megalodon-2.2.1.dist-info/RECORD'
2020-09-12T18:36:06,618   removing build/bdist.linux-armv7l/wheel
2020-09-12T18:36:06,936   Building wheel for megalodon (setup.py): finished with status 'done'
2020-09-12T18:36:07,105   Created wheel for megalodon: filename=megalodon-2.2.1-cp37-cp37m-linux_armv7l.whl size=6717057 sha256=608829386e94857d733252021bfe75ef4bf991b8b8a83688cc71cf4366010a58
2020-09-12T18:36:07,105   Stored in directory: /tmp/pip-ephem-wheel-cache-3bswyw7l/wheels/ad/19/42/b43d129637f7be8f501fee6f00a87211695719913d54a344f2
2020-09-12T18:36:07,108 Successfully built megalodon
2020-09-12T18:36:07,324 Removed build tracker: '/tmp/pip-req-tracker-p5s6cxcn'