2020-09-15T00:47:03,310 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-09-15T00:47:03,970 Created temporary directory: /tmp/pip-ephem-wheel-cache-js2_y9b5
2020-09-15T00:47:03,974 Created temporary directory: /tmp/pip-req-tracker-owwe0535
2020-09-15T00:47:03,975 Initialized build tracking at /tmp/pip-req-tracker-owwe0535
2020-09-15T00:47:03,976 Created build tracker: /tmp/pip-req-tracker-owwe0535
2020-09-15T00:47:03,976 Entered build tracker: /tmp/pip-req-tracker-owwe0535
2020-09-15T00:47:03,978 Created temporary directory: /tmp/pip-wheel-jb0go7g7
2020-09-15T00:47:03,994 1 location(s) to search for versions of peppercompiler:
2020-09-15T00:47:03,994 * https://pypi.org/simple/peppercompiler/
2020-09-15T00:47:03,995 Fetching project page and analyzing links: https://pypi.org/simple/peppercompiler/
2020-09-15T00:47:03,997 Getting page https://pypi.org/simple/peppercompiler/
2020-09-15T00:47:04,001 Found index url https://pypi.org/simple
2020-09-15T00:47:04,318   Found link https://files.pythonhosted.org/packages/a6/eb/f5851741799611a856c3153fdd852e36d64152b92842a827540cdad9ac2f/peppercompiler-0.1.0.tar.gz#sha256=2db1b7a2be5db38b8c32f669f830ba3e5c5bebdc87b84cb6866fe94c762df9d7 (from https://pypi.org/simple/peppercompiler/), version: 0.1.0
2020-09-15T00:47:04,319   Found link https://files.pythonhosted.org/packages/0e/fd/84d2a398f1ff6763cd45899605bef6998aca94a240562822a55532c951de/peppercompiler-0.1.1.tar.gz#sha256=5926c14637edfcbb959150c9050db0a7120ac8a4bd59732c3a144d344bb5e605 (from https://pypi.org/simple/peppercompiler/), version: 0.1.1
2020-09-15T00:47:04,320   Found link https://files.pythonhosted.org/packages/01/3c/e6e72f3d2af8f4e57f85f9fa2b1b8a1beb71a4917c073dc70a0bfa3605b1/peppercompiler-0.1.2.tar.gz#sha256=a5ce25e817c910d8e8b12abb5d0f4f1374e4aa27ae7d0742265272426f783413 (from https://pypi.org/simple/peppercompiler/), version: 0.1.2
2020-09-15T00:47:04,321   Found link https://files.pythonhosted.org/packages/50/eb/6431827b31523cde9f2cff00b00d3d51692f35160989d25c55080f215389/peppercompiler-0.1.3.tar.gz#sha256=0861707b4f4dba5b14a11ecb94d3c5cae1a3aaebcd7337ab93293e8eb043e205 (from https://pypi.org/simple/peppercompiler/), version: 0.1.3
2020-09-15T00:47:04,332 Given no hashes to check 1 links for project 'peppercompiler': discarding no candidates
2020-09-15T00:47:04,334 Using version 0.1.3 (newest of versions: 0.1.3)
2020-09-15T00:47:04,342 Collecting peppercompiler==0.1.3
2020-09-15T00:47:04,347   Created temporary directory: /tmp/pip-unpack-7fyur18k
2020-09-15T00:47:04,586   Downloading peppercompiler-0.1.3.tar.gz (75 kB)
2020-09-15T00:47:05,088   Added peppercompiler==0.1.3 from https://files.pythonhosted.org/packages/50/eb/6431827b31523cde9f2cff00b00d3d51692f35160989d25c55080f215389/peppercompiler-0.1.3.tar.gz#sha256=0861707b4f4dba5b14a11ecb94d3c5cae1a3aaebcd7337ab93293e8eb043e205 to build tracker '/tmp/pip-req-tracker-owwe0535'
2020-09-15T00:47:05,091     Running setup.py (path:/tmp/pip-wheel-jb0go7g7/peppercompiler/setup.py) egg_info for package peppercompiler
2020-09-15T00:47:05,094     Created temporary directory: /tmp/pip-pip-egg-info-qbmj60sh
2020-09-15T00:47:05,095     Running command python setup.py egg_info
2020-09-15T00:47:07,410     running egg_info
2020-09-15T00:47:07,415     creating /tmp/pip-pip-egg-info-qbmj60sh/peppercompiler.egg-info
2020-09-15T00:47:07,418     writing entry points to /tmp/pip-pip-egg-info-qbmj60sh/peppercompiler.egg-info/entry_points.txt
2020-09-15T00:47:07,421     writing /tmp/pip-pip-egg-info-qbmj60sh/peppercompiler.egg-info/PKG-INFO
2020-09-15T00:47:07,424     writing top-level names to /tmp/pip-pip-egg-info-qbmj60sh/peppercompiler.egg-info/top_level.txt
2020-09-15T00:47:07,427     writing dependency_links to /tmp/pip-pip-egg-info-qbmj60sh/peppercompiler.egg-info/dependency_links.txt
2020-09-15T00:47:07,430     writing requirements to /tmp/pip-pip-egg-info-qbmj60sh/peppercompiler.egg-info/requires.txt
2020-09-15T00:47:07,435     writing manifest file '/tmp/pip-pip-egg-info-qbmj60sh/peppercompiler.egg-info/SOURCES.txt'
2020-09-15T00:47:07,781     reading manifest file '/tmp/pip-pip-egg-info-qbmj60sh/peppercompiler.egg-info/SOURCES.txt'
2020-09-15T00:47:07,784     reading manifest template 'MANIFEST.in'
2020-09-15T00:47:07,794     writing manifest file '/tmp/pip-pip-egg-info-qbmj60sh/peppercompiler.egg-info/SOURCES.txt'
2020-09-15T00:47:07,948   Source in /tmp/pip-wheel-jb0go7g7/peppercompiler has version 0.1.3, which satisfies requirement peppercompiler==0.1.3 from https://files.pythonhosted.org/packages/50/eb/6431827b31523cde9f2cff00b00d3d51692f35160989d25c55080f215389/peppercompiler-0.1.3.tar.gz#sha256=0861707b4f4dba5b14a11ecb94d3c5cae1a3aaebcd7337ab93293e8eb043e205
2020-09-15T00:47:07,950   Removed peppercompiler==0.1.3 from https://files.pythonhosted.org/packages/50/eb/6431827b31523cde9f2cff00b00d3d51692f35160989d25c55080f215389/peppercompiler-0.1.3.tar.gz#sha256=0861707b4f4dba5b14a11ecb94d3c5cae1a3aaebcd7337ab93293e8eb043e205 from build tracker '/tmp/pip-req-tracker-owwe0535'
2020-09-15T00:47:07,953 Building wheels for collected packages: peppercompiler
2020-09-15T00:47:07,962   Created temporary directory: /tmp/pip-wheel-y_q7nbh_
2020-09-15T00:47:07,963   Building wheel for peppercompiler (setup.py): started
2020-09-15T00:47:07,964   Destination directory: /tmp/pip-wheel-y_q7nbh_
2020-09-15T00:47:07,964   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-jb0go7g7/peppercompiler/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-jb0go7g7/peppercompiler/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-y_q7nbh_
2020-09-15T00:47:10,247   running bdist_wheel
2020-09-15T00:47:10,251   running build
2020-09-15T00:47:10,287   cc: error: peppercompiler/SpuriousDesign/spuriousSSM.c: No such file or directory
2020-09-15T00:47:10,292   running build_py
2020-09-15T00:47:10,621   creating build
2020-09-15T00:47:10,622   creating build/lib
2020-09-15T00:47:10,623   creating build/lib/peppercompiler
2020-09-15T00:47:10,626   copying peppercompiler/var_substitute.py -> build/lib/peppercompiler
2020-09-15T00:47:10,631   copying peppercompiler/exDotParen_grammar.py -> build/lib/peppercompiler
2020-09-15T00:47:10,634   copying peppercompiler/nupack_out_grammar.py -> build/lib/peppercompiler
2020-09-15T00:47:10,638   copying peppercompiler/DNAfold.py -> build/lib/peppercompiler
2020-09-15T00:47:10,642   copying peppercompiler/RNAfold_grammar.py -> build/lib/peppercompiler
2020-09-15T00:47:10,646   copying peppercompiler/utils.py -> build/lib/peppercompiler
2020-09-15T00:47:10,652   copying peppercompiler/finish.py -> build/lib/peppercompiler
2020-09-15T00:47:10,659   copying peppercompiler/component_parser_regex.py -> build/lib/peppercompiler
2020-09-15T00:47:10,665   copying peppercompiler/quickargs.py -> build/lib/peppercompiler
2020-09-15T00:47:10,670   copying peppercompiler/DNA_classes.py -> build/lib/peppercompiler
2020-09-15T00:47:10,677   copying peppercompiler/multistrand.py -> build/lib/peppercompiler
2020-09-15T00:47:10,684   copying peppercompiler/component_parser_pyparsing.py -> build/lib/peppercompiler
2020-09-15T00:47:10,690   copying peppercompiler/system_class.py -> build/lib/peppercompiler
2020-09-15T00:47:10,697   copying peppercompiler/multihelp.py -> build/lib/peppercompiler
2020-09-15T00:47:10,703   copying peppercompiler/compiler.py -> build/lib/peppercompiler
2020-09-15T00:47:10,709   copying peppercompiler/component_class.py -> build/lib/peppercompiler
2020-09-15T00:47:10,716   copying peppercompiler/DotParen_grammar.py -> build/lib/peppercompiler
2020-09-15T00:47:10,722   copying peppercompiler/HU_grammar.py -> build/lib/peppercompiler
2020-09-15T00:47:10,727   copying peppercompiler/component_parser.py -> build/lib/peppercompiler
2020-09-15T00:47:10,733   copying peppercompiler/test.py -> build/lib/peppercompiler
2020-09-15T00:47:10,738   copying peppercompiler/system_parser_pyparsing.py -> build/lib/peppercompiler
2020-09-15T00:47:10,743   copying peppercompiler/kinetics.py -> build/lib/peppercompiler
2020-09-15T00:47:10,749   copying peppercompiler/DNAfold_Vienna.py -> build/lib/peppercompiler
2020-09-15T00:47:10,754   copying peppercompiler/__init__.py -> build/lib/peppercompiler
2020-09-15T00:47:10,759   copying peppercompiler/nupack_mfe_grammar.py -> build/lib/peppercompiler
2020-09-15T00:47:10,764   copying peppercompiler/HU2dotParen.py -> build/lib/peppercompiler
2020-09-15T00:47:10,770   copying peppercompiler/myStat.py -> build/lib/peppercompiler
2020-09-15T00:47:10,776   copying peppercompiler/_spuriousSSM_wrapper.py -> build/lib/peppercompiler
2020-09-15T00:47:10,782   copying peppercompiler/system_parser.py -> build/lib/peppercompiler
2020-09-15T00:47:10,787   copying peppercompiler/DNAfold_Nupack.py -> build/lib/peppercompiler
2020-09-15T00:47:10,793   copying peppercompiler/new_loading.py -> build/lib/peppercompiler
2020-09-15T00:47:10,804   creating build/lib/peppercompiler/design
2020-09-15T00:47:10,807   copying peppercompiler/design/PIL_parser.py -> build/lib/peppercompiler/design
2020-09-15T00:47:10,813   copying peppercompiler/design/find_file.py -> build/lib/peppercompiler/design
2020-09-15T00:47:10,818   copying peppercompiler/design/nupack_in_parser.py -> build/lib/peppercompiler/design
2020-09-15T00:47:10,822   copying peppercompiler/design/spurious_design.py -> build/lib/peppercompiler/design
2020-09-15T00:47:10,828   copying peppercompiler/design/avoid_design.py -> build/lib/peppercompiler/design
2020-09-15T00:47:10,834   copying peppercompiler/design/nupack_in_class.py -> build/lib/peppercompiler/design
2020-09-15T00:47:10,840   copying peppercompiler/design/PIL_class.py -> build/lib/peppercompiler/design
2020-09-15T00:47:10,845   copying peppercompiler/design/avoid.py -> build/lib/peppercompiler/design
2020-09-15T00:47:10,852   copying peppercompiler/design/constraints.py -> build/lib/peppercompiler/design
2020-09-15T00:47:10,858   copying peppercompiler/design/DNA_nupack_classes.py -> build/lib/peppercompiler/design
2020-09-15T00:47:10,864   copying peppercompiler/design/__init__.py -> build/lib/peppercompiler/design
2020-09-15T00:47:10,869   copying peppercompiler/design/PIL_DNA_classes.py -> build/lib/peppercompiler/design
2020-09-15T00:47:10,876   copying peppercompiler/design/random_design.py -> build/lib/peppercompiler/design
2020-09-15T00:47:10,883   copying peppercompiler/design/constraint_load.py -> build/lib/peppercompiler/design
2020-09-15T00:47:10,891   copying peppercompiler/design/new_loading.py -> build/lib/peppercompiler/design
2020-09-15T00:47:10,895   running egg_info
2020-09-15T00:47:10,906   writing dependency_links to peppercompiler.egg-info/dependency_links.txt
2020-09-15T00:47:10,909   writing peppercompiler.egg-info/PKG-INFO
2020-09-15T00:47:10,915   writing entry points to peppercompiler.egg-info/entry_points.txt
2020-09-15T00:47:10,917   writing top-level names to peppercompiler.egg-info/top_level.txt
2020-09-15T00:47:10,920   writing requirements to peppercompiler.egg-info/requires.txt
2020-09-15T00:47:10,937   reading manifest file 'peppercompiler.egg-info/SOURCES.txt'
2020-09-15T00:47:10,944   reading manifest template 'MANIFEST.in'
2020-09-15T00:47:10,956   writing manifest file 'peppercompiler.egg-info/SOURCES.txt'
2020-09-15T00:47:10,963   copying peppercompiler/_spuriousSSM -> build/lib/peppercompiler
2020-09-15T00:47:10,984   installing to build/bdist.linux-armv7l/wheel
2020-09-15T00:47:10,985   running install
2020-09-15T00:47:10,986   running install_lib
2020-09-15T00:47:10,994   creating build/bdist.linux-armv7l
2020-09-15T00:47:10,995   creating build/bdist.linux-armv7l/wheel
2020-09-15T00:47:11,000   creating build/bdist.linux-armv7l/wheel/peppercompiler
2020-09-15T00:47:11,002   copying build/lib/peppercompiler/var_substitute.py -> build/bdist.linux-armv7l/wheel/peppercompiler
2020-09-15T00:47:11,007   copying build/lib/peppercompiler/exDotParen_grammar.py -> build/bdist.linux-armv7l/wheel/peppercompiler
2020-09-15T00:47:11,011   copying build/lib/peppercompiler/nupack_out_grammar.py -> build/bdist.linux-armv7l/wheel/peppercompiler
2020-09-15T00:47:11,015   copying build/lib/peppercompiler/DNAfold.py -> build/bdist.linux-armv7l/wheel/peppercompiler
2020-09-15T00:47:11,020   copying build/lib/peppercompiler/RNAfold_grammar.py -> build/bdist.linux-armv7l/wheel/peppercompiler
2020-09-15T00:47:11,026   copying build/lib/peppercompiler/utils.py -> build/bdist.linux-armv7l/wheel/peppercompiler
2020-09-15T00:47:11,032   copying build/lib/peppercompiler/finish.py -> build/bdist.linux-armv7l/wheel/peppercompiler
2020-09-15T00:47:11,039   copying build/lib/peppercompiler/component_parser_regex.py -> build/bdist.linux-armv7l/wheel/peppercompiler
2020-09-15T00:47:11,045   copying build/lib/peppercompiler/quickargs.py -> build/bdist.linux-armv7l/wheel/peppercompiler
2020-09-15T00:47:11,051   copying build/lib/peppercompiler/DNA_classes.py -> build/bdist.linux-armv7l/wheel/peppercompiler
2020-09-15T00:47:11,058   copying build/lib/peppercompiler/multistrand.py -> build/bdist.linux-armv7l/wheel/peppercompiler
2020-09-15T00:47:11,064   copying build/lib/peppercompiler/component_parser_pyparsing.py -> build/bdist.linux-armv7l/wheel/peppercompiler
2020-09-15T00:47:11,073   creating build/bdist.linux-armv7l/wheel/peppercompiler/design
2020-09-15T00:47:11,075   copying build/lib/peppercompiler/design/PIL_parser.py -> build/bdist.linux-armv7l/wheel/peppercompiler/design
2020-09-15T00:47:11,082   copying build/lib/peppercompiler/design/find_file.py -> build/bdist.linux-armv7l/wheel/peppercompiler/design
2020-09-15T00:47:11,087   copying build/lib/peppercompiler/design/nupack_in_parser.py -> build/bdist.linux-armv7l/wheel/peppercompiler/design
2020-09-15T00:47:11,093   copying build/lib/peppercompiler/design/spurious_design.py -> build/bdist.linux-armv7l/wheel/peppercompiler/design
2020-09-15T00:47:11,099   copying build/lib/peppercompiler/design/avoid_design.py -> build/bdist.linux-armv7l/wheel/peppercompiler/design
2020-09-15T00:47:11,104   copying build/lib/peppercompiler/design/nupack_in_class.py -> build/bdist.linux-armv7l/wheel/peppercompiler/design
2020-09-15T00:47:11,110   copying build/lib/peppercompiler/design/PIL_class.py -> build/bdist.linux-armv7l/wheel/peppercompiler/design
2020-09-15T00:47:11,115   copying build/lib/peppercompiler/design/avoid.py -> build/bdist.linux-armv7l/wheel/peppercompiler/design
2020-09-15T00:47:11,122   copying build/lib/peppercompiler/design/constraints.py -> build/bdist.linux-armv7l/wheel/peppercompiler/design
2020-09-15T00:47:11,127   copying build/lib/peppercompiler/design/DNA_nupack_classes.py -> build/bdist.linux-armv7l/wheel/peppercompiler/design
2020-09-15T00:47:11,133   copying build/lib/peppercompiler/design/__init__.py -> build/bdist.linux-armv7l/wheel/peppercompiler/design
2020-09-15T00:47:11,137   copying build/lib/peppercompiler/design/PIL_DNA_classes.py -> build/bdist.linux-armv7l/wheel/peppercompiler/design
2020-09-15T00:47:11,144   copying build/lib/peppercompiler/design/random_design.py -> build/bdist.linux-armv7l/wheel/peppercompiler/design
2020-09-15T00:47:11,150   copying build/lib/peppercompiler/design/constraint_load.py -> build/bdist.linux-armv7l/wheel/peppercompiler/design
2020-09-15T00:47:11,158   copying build/lib/peppercompiler/design/new_loading.py -> build/bdist.linux-armv7l/wheel/peppercompiler/design
2020-09-15T00:47:11,163   copying build/lib/peppercompiler/system_class.py -> build/bdist.linux-armv7l/wheel/peppercompiler
2020-09-15T00:47:11,171   copying build/lib/peppercompiler/multihelp.py -> build/bdist.linux-armv7l/wheel/peppercompiler
2020-09-15T00:47:11,176   copying build/lib/peppercompiler/compiler.py -> build/bdist.linux-armv7l/wheel/peppercompiler
2020-09-15T00:47:11,183   copying build/lib/peppercompiler/component_class.py -> build/bdist.linux-armv7l/wheel/peppercompiler
2020-09-15T00:47:11,190   copying build/lib/peppercompiler/DotParen_grammar.py -> build/bdist.linux-armv7l/wheel/peppercompiler
2020-09-15T00:47:11,195   copying build/lib/peppercompiler/HU_grammar.py -> build/bdist.linux-armv7l/wheel/peppercompiler
2020-09-15T00:47:11,201   copying build/lib/peppercompiler/_spuriousSSM -> build/bdist.linux-armv7l/wheel/peppercompiler
2020-09-15T00:47:11,212   copying build/lib/peppercompiler/component_parser.py -> build/bdist.linux-armv7l/wheel/peppercompiler
2020-09-15T00:47:11,219   copying build/lib/peppercompiler/test.py -> build/bdist.linux-armv7l/wheel/peppercompiler
2020-09-15T00:47:11,224   copying build/lib/peppercompiler/system_parser_pyparsing.py -> build/bdist.linux-armv7l/wheel/peppercompiler
2020-09-15T00:47:11,230   copying build/lib/peppercompiler/kinetics.py -> build/bdist.linux-armv7l/wheel/peppercompiler
2020-09-15T00:47:11,236   copying build/lib/peppercompiler/DNAfold_Vienna.py -> build/bdist.linux-armv7l/wheel/peppercompiler
2020-09-15T00:47:11,241   copying build/lib/peppercompiler/__init__.py -> build/bdist.linux-armv7l/wheel/peppercompiler
2020-09-15T00:47:11,246   copying build/lib/peppercompiler/nupack_mfe_grammar.py -> build/bdist.linux-armv7l/wheel/peppercompiler
2020-09-15T00:47:11,252   copying build/lib/peppercompiler/HU2dotParen.py -> build/bdist.linux-armv7l/wheel/peppercompiler
2020-09-15T00:47:11,257   copying build/lib/peppercompiler/myStat.py -> build/bdist.linux-armv7l/wheel/peppercompiler
2020-09-15T00:47:11,263   copying build/lib/peppercompiler/_spuriousSSM_wrapper.py -> build/bdist.linux-armv7l/wheel/peppercompiler
2020-09-15T00:47:11,269   copying build/lib/peppercompiler/system_parser.py -> build/bdist.linux-armv7l/wheel/peppercompiler
2020-09-15T00:47:11,274   copying build/lib/peppercompiler/DNAfold_Nupack.py -> build/bdist.linux-armv7l/wheel/peppercompiler
2020-09-15T00:47:11,280   copying build/lib/peppercompiler/new_loading.py -> build/bdist.linux-armv7l/wheel/peppercompiler
2020-09-15T00:47:11,286   running install_egg_info
2020-09-15T00:47:11,293   Copying peppercompiler.egg-info to build/bdist.linux-armv7l/wheel/peppercompiler-0.1.3-py3.5.egg-info
2020-09-15T00:47:11,326   running install_scripts
2020-09-15T00:47:11,393   creating build/bdist.linux-armv7l/wheel/peppercompiler-0.1.3.dist-info/WHEEL
2020-09-15T00:47:11,843   Building wheel for peppercompiler (setup.py): finished with status 'done'
2020-09-15T00:47:11,849   Created wheel for peppercompiler: filename=peppercompiler-0.1.3-py3-none-any.whl size=89967 sha256=ad0c4f213b18b6294808dc77b5dc33e74212116aaf69190634173613057c8f33
2020-09-15T00:47:11,850   Stored in directory: /tmp/pip-ephem-wheel-cache-js2_y9b5/wheels/98/ec/0b/bed2fe89812ceeb3d0275d50eca5659de4a395a4aa46947f03
2020-09-15T00:47:11,855 Successfully built peppercompiler
2020-09-15T00:47:11,877 Removed build tracker: '/tmp/pip-req-tracker-owwe0535'