2020-09-18T16:20:24,021 Created temporary directory: /tmp/pip-ephem-wheel-cache-p8zb36lh
2020-09-18T16:20:24,023 Created temporary directory: /tmp/pip-req-tracker-mgbrmtdk
2020-09-18T16:20:24,023 Initialized build tracking at /tmp/pip-req-tracker-mgbrmtdk
2020-09-18T16:20:24,024 Created build tracker: /tmp/pip-req-tracker-mgbrmtdk
2020-09-18T16:20:24,024 Entered build tracker: /tmp/pip-req-tracker-mgbrmtdk
2020-09-18T16:20:24,024 Created temporary directory: /tmp/pip-wheel-ha69glkw
2020-09-18T16:20:24,034 1 location(s) to search for versions of megalodon:
2020-09-18T16:20:24,034 * https://pypi.org/simple/megalodon/
2020-09-18T16:20:24,034 Fetching project page and analyzing links: https://pypi.org/simple/megalodon/
2020-09-18T16:20:24,035 Getting page https://pypi.org/simple/megalodon/
2020-09-18T16:20:24,036 Found index url https://pypi.org/simple
2020-09-18T16:20:24,174   Skipping link: none of the wheel's tags match: cp37-cp37m-macosx_10_14_x86_64: https://files.pythonhosted.org/packages/fe/5f/fc169f4470c2ab9a3d0dcf7b0eba0752a950494eb6587cbe3425724bcbaa/megalodon-1.0.0-cp37-cp37m-macosx_10_14_x86_64.whl#sha256=de244047d7a7d1f08a86fbed509d20eeed709187f84e765d9b9a4f5359364a30 (from https://pypi.org/simple/megalodon/)
2020-09-18T16:20:24,174   Found link https://files.pythonhosted.org/packages/9b/94/e9a546cb3958043d7378b0d1b5eebe01ca3923db3de08a10ef230e27dff5/megalodon-1.0.0.tar.gz#sha256=a547c80eb95763ecf13fed66023953fa8fe6c98082e9e249ef0f859772f01ccc (from https://pypi.org/simple/megalodon/), version: 1.0.0
2020-09-18T16:20:24,175   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/15/da/db7e0d83c7237552d45289530e9418d460c7a994f0d2b6a1735f98f62ecf/megalodon-2.0.0-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=bcea1352257f402f82787a2494ebc02f35503c15edd739fe8663f1417447be13 (from https://pypi.org/simple/megalodon/)
2020-09-18T16:20:24,175   Found link https://files.pythonhosted.org/packages/1d/e0/6a40deaac257dacfb2c31c056b37abd76e8ddfc8e852ea5117cb3d67b220/megalodon-2.0.0.tar.gz#sha256=28deb452ba87cfdf116bcdbc2e6335ab3220d363a7f545594d43c60cf8e9040c (from https://pypi.org/simple/megalodon/), version: 2.0.0
2020-09-18T16:20:24,176   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/33/7c/bfd056d9b7d5a618f61d28fe44d2402a16b6a959f9a30cd13f8dc7046e4c/megalodon-2.1.0-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=1052edf69302c8d018bdde48d6673c03364255acdfde0aa9938997fee66f7fbe (from https://pypi.org/simple/megalodon/)
2020-09-18T16:20:24,176   Found link https://files.pythonhosted.org/packages/aa/cc/b3c81dc70660c4e043180ea7535b8b42dd8724cddd784dbeb039ff2bf0c5/megalodon-2.1.0.tar.gz#sha256=1e6db96a9d14a1041b435f4cf0fdd19a0809490efd4c2d4dae7eeaa2423db3a3 (from https://pypi.org/simple/megalodon/), version: 2.1.0
2020-09-18T16:20:24,176   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/82/eb/8a50a84306188acf8c4dc1855184d652e6497a11343769b2d6b474a96d66/megalodon-2.2.0-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=d138a85f21444a1105bc8c056b92e44a3866692291d7af3d76f87dcab8f986b1 (from https://pypi.org/simple/megalodon/)
2020-09-18T16:20:24,177   Found link https://files.pythonhosted.org/packages/74/a9/32eb1037cb5e427a433a648e02fd0e3e137d8803320858190e7b2fec74a7/megalodon-2.2.0.tar.gz#sha256=0f057644f21ce76ea8b50625e297c9f9449e0710a9423387c4d7da43b4e13115 (from https://pypi.org/simple/megalodon/), version: 2.2.0
2020-09-18T16:20:24,177   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/82/27/2831a1d28162814e76b2e8a11fce724981e8859d1bc01f6466c242c4aca8/megalodon-2.2.1-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=2cad064accda0a6aef3ac728fc3a1bdd4016145eb16cb322b542b0312cdb5cd5 (from https://pypi.org/simple/megalodon/)
2020-09-18T16:20:24,177   Found link https://files.pythonhosted.org/packages/af/83/f12260694514be27333adb79165bc3958b59909eb21495b918a98e0e6f07/megalodon-2.2.1.tar.gz#sha256=33f3fdeae806a34fc9a0e2b3cb5b4d5bf7c1822c6eb00f9ed8a3cd2fb1327ef7 (from https://pypi.org/simple/megalodon/), version: 2.2.1
2020-09-18T16:20:24,178   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/23/94/863df7fd77e1944284db39b53c3cc1f70e0f8fcbf6986d2a88e6f4d580e8/megalodon-2.2.2-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=0d097cc1fef40f8687647b5b2762567b845af016da396720bdd831e205ee8a17 (from https://pypi.org/simple/megalodon/)
2020-09-18T16:20:24,178   Found link https://files.pythonhosted.org/packages/9e/46/69945645195a2fb592946734e200065f4789a25d58083d8c3abf9892a81f/megalodon-2.2.2.tar.gz#sha256=e4c1e59951187bee9113cbaa34e1b7e1481cd4445e7086e05e2f87ed2fdcff4b (from https://pypi.org/simple/megalodon/), version: 2.2.2
2020-09-18T16:20:24,179 Given no hashes to check 1 links for project 'megalodon': discarding no candidates
2020-09-18T16:20:24,180 Using version 2.2.2 (newest of versions: 2.2.2)
2020-09-18T16:20:24,183 Collecting megalodon==2.2.2
2020-09-18T16:20:24,185   Created temporary directory: /tmp/pip-unpack-znia98f9
2020-09-18T16:20:24,254   Downloading megalodon-2.2.2.tar.gz (6.5 MB)
2020-09-18T16:20:25,858   Added megalodon==2.2.2 from https://files.pythonhosted.org/packages/9e/46/69945645195a2fb592946734e200065f4789a25d58083d8c3abf9892a81f/megalodon-2.2.2.tar.gz#sha256=e4c1e59951187bee9113cbaa34e1b7e1481cd4445e7086e05e2f87ed2fdcff4b to build tracker '/tmp/pip-req-tracker-mgbrmtdk'
2020-09-18T16:20:25,859     Running setup.py (path:/tmp/pip-wheel-ha69glkw/megalodon/setup.py) egg_info for package megalodon
2020-09-18T16:20:25,860     Created temporary directory: /tmp/pip-pip-egg-info-6ay39kph
2020-09-18T16:20:25,860     Running command python setup.py egg_info
2020-09-18T16:20:27,153     running egg_info
2020-09-18T16:20:27,155     creating /tmp/pip-pip-egg-info-6ay39kph/megalodon.egg-info
2020-09-18T16:20:27,156     writing /tmp/pip-pip-egg-info-6ay39kph/megalodon.egg-info/PKG-INFO
2020-09-18T16:20:27,160     writing dependency_links to /tmp/pip-pip-egg-info-6ay39kph/megalodon.egg-info/dependency_links.txt
2020-09-18T16:20:27,162     writing entry points to /tmp/pip-pip-egg-info-6ay39kph/megalodon.egg-info/entry_points.txt
2020-09-18T16:20:27,163     writing requirements to /tmp/pip-pip-egg-info-6ay39kph/megalodon.egg-info/requires.txt
2020-09-18T16:20:27,164     writing top-level names to /tmp/pip-pip-egg-info-6ay39kph/megalodon.egg-info/top_level.txt
2020-09-18T16:20:27,166     writing manifest file '/tmp/pip-pip-egg-info-6ay39kph/megalodon.egg-info/SOURCES.txt'
2020-09-18T16:20:27,528     reading manifest file '/tmp/pip-pip-egg-info-6ay39kph/megalodon.egg-info/SOURCES.txt'
2020-09-18T16:20:27,530     reading manifest template 'MANIFEST.in'
2020-09-18T16:20:27,535     writing manifest file '/tmp/pip-pip-egg-info-6ay39kph/megalodon.egg-info/SOURCES.txt'
2020-09-18T16:20:27,634   Source in /tmp/pip-wheel-ha69glkw/megalodon has version 2.2.2, which satisfies requirement megalodon==2.2.2 from https://files.pythonhosted.org/packages/9e/46/69945645195a2fb592946734e200065f4789a25d58083d8c3abf9892a81f/megalodon-2.2.2.tar.gz#sha256=e4c1e59951187bee9113cbaa34e1b7e1481cd4445e7086e05e2f87ed2fdcff4b
2020-09-18T16:20:27,635   Removed megalodon==2.2.2 from https://files.pythonhosted.org/packages/9e/46/69945645195a2fb592946734e200065f4789a25d58083d8c3abf9892a81f/megalodon-2.2.2.tar.gz#sha256=e4c1e59951187bee9113cbaa34e1b7e1481cd4445e7086e05e2f87ed2fdcff4b from build tracker '/tmp/pip-req-tracker-mgbrmtdk'
2020-09-18T16:20:27,639 Building wheels for collected packages: megalodon
2020-09-18T16:20:27,644   Created temporary directory: /tmp/pip-wheel-d424urht
2020-09-18T16:20:27,645   Building wheel for megalodon (setup.py): started
2020-09-18T16:20:27,646   Destination directory: /tmp/pip-wheel-d424urht
2020-09-18T16:20:27,646   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-ha69glkw/megalodon/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-ha69glkw/megalodon/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-d424urht
2020-09-18T16:20:28,925   running bdist_wheel
2020-09-18T16:20:28,932   running build
2020-09-18T16:20:28,932   running build_py
2020-09-18T16:20:29,059   creating build
2020-09-18T16:20:29,060   creating build/lib.linux-armv7l-3.7
2020-09-18T16:20:29,060   creating build/lib.linux-armv7l-3.7/megalodon
2020-09-18T16:20:29,062   copying megalodon/mods.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-18T16:20:29,066   copying megalodon/__init__.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-18T16:20:29,067   copying megalodon/backends.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-18T16:20:29,070   copying megalodon/signal_mapping.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-18T16:20:29,072   copying megalodon/_version.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-18T16:20:29,074   copying megalodon/logging.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-18T16:20:29,076   copying megalodon/variants.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-18T16:20:29,080   copying megalodon/__main__.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-18T16:20:29,082   copying megalodon/aggregate.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-18T16:20:29,085   copying megalodon/megalodon_helper.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-18T16:20:29,087   copying megalodon/megalodon.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-18T16:20:29,091   copying megalodon/fast5_io.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-18T16:20:29,094   copying megalodon/mapping.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-18T16:20:29,097   copying megalodon/calibration.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-18T16:20:29,100   copying megalodon/megalodon_multiprocessing.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-18T16:20:29,105   creating build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-18T16:20:29,106   copying megalodon_extras/modified_bases_create_ground_truth.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-18T16:20:29,109   copying megalodon_extras/variants_resolve.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-18T16:20:29,112   copying megalodon_extras/calibrate_merge_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-18T16:20:29,114   copying megalodon_extras/merge_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-18T16:20:29,117   copying megalodon_extras/__init__.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-18T16:20:29,118   copying megalodon_extras/validate_aggregated_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-18T16:20:29,121   copying megalodon_extras/per_read_text_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-18T16:20:29,123   copying megalodon_extras/variants_index_database.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-18T16:20:29,126   copying megalodon_extras/modified_bases_per_site_thresholds.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-18T16:20:29,128   copying megalodon_extras/modified_bases_update_database.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-18T16:20:29,131   copying megalodon_extras/aggregate_run.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-18T16:20:29,133   copying megalodon_extras/modified_bases_describe_alphabet.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-18T16:20:29,135   copying megalodon_extras/merge_variants.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-18T16:20:29,164   copying megalodon_extras/modified_bases_estimate_threshold.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-18T16:20:29,167   copying megalodon_extras/__main__.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-18T16:20:29,170   copying megalodon_extras/variants_atomize.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-18T16:20:29,173   copying megalodon_extras/phase_variants_whatshap_filter.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-18T16:20:29,176   copying megalodon_extras/variants_heterozygous_factor.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-18T16:20:29,179   copying megalodon_extras/calibrate_generate_variant_stats.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-18T16:20:29,183   copying megalodon_extras/modified_bases_split_by_motif.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-18T16:20:29,186   copying megalodon_extras/validate_compare_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-18T16:20:29,189   copying megalodon_extras/_extras_parsers.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-18T16:20:29,193   copying megalodon_extras/per_read_text_variants.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-18T16:20:29,195   copying megalodon_extras/phase_variants_extract_haplotype_reads.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-18T16:20:29,198   copying megalodon_extras/calibrate_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-18T16:20:29,201   copying megalodon_extras/phase_variants_merge_haploid_variants.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-18T16:20:29,204   copying megalodon_extras/calibrate_generate_modified_base_stats.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-18T16:20:29,207   copying megalodon_extras/modified_bases_index_database.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-18T16:20:29,210   copying megalodon_extras/calibrate_variants.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-18T16:20:29,213   copying megalodon_extras/validate_results.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-18T16:20:29,230   creating build/lib.linux-armv7l-3.7/megalodon/model_data
2020-09-18T16:20:29,231   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-18T16:20:29,233   copying megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-18T16:20:29,238   copying megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-18T16:20:29,263   copying megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-18T16:20:29,267   copying megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-18T16:20:29,276   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-09-18T16:20:29,277   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-09-18T16:20:29,287   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-09-18T16:20:29,292   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-09-18T16:20:29,293   copying megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-09-18T16:20:29,343   copying megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-09-18T16:20:29,353   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-09-18T16:20:29,355   copying megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-09-18T16:20:29,384   copying megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-09-18T16:20:29,391   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-09-18T16:20:29,392   copying megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-09-18T16:20:29,412   copying megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-09-18T16:20:29,418   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-09-18T16:20:29,419   copying megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-09-18T16:20:29,441   copying megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-09-18T16:20:29,450   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-18T16:20:29,451   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-18T16:20:29,461   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-18T16:20:29,487   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-18T16:20:29,491   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-18T16:20:29,500   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-09-18T16:20:29,501   copying megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-09-18T16:20:29,504   copying megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-09-18T16:20:29,507   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-18T16:20:29,508   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-18T16:20:29,514   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-18T16:20:29,538   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-18T16:20:29,544   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-18T16:20:29,554   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-09-18T16:20:29,555   copying megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-09-18T16:20:29,581   copying megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-09-18T16:20:29,588   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-09-18T16:20:29,589   copying megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-09-18T16:20:29,611   copying megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-09-18T16:20:29,618   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-09-18T16:20:29,619   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-09-18T16:20:29,622   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-09-18T16:20:29,625   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-09-18T16:20:29,626   copying megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-09-18T16:20:29,654   copying megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-09-18T16:20:29,662   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-09-18T16:20:29,663   copying megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-09-18T16:20:29,689   copying megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-09-18T16:20:29,698   running build_ext
2020-09-18T16:20:29,924   cythoning megalodon/_decode.pyx to megalodon/_decode.c
2020-09-18T16:20:32,169   building 'megalodon.decode' extension
2020-09-18T16:20:32,169   creating build/temp.linux-armv7l-3.7
2020-09-18T16:20:32,170   creating build/temp.linux-armv7l-3.7/megalodon
2020-09-18T16:20:32,171   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c megalodon/_decode.c -o build/temp.linux-armv7l-3.7/megalodon/_decode.o -std=c99
2020-09-18T16:20:32,572   In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2020-09-18T16:20:32,572                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2020-09-18T16:20:32,572                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2020-09-18T16:20:32,573                    from megalodon/_decode.c:612:
2020-09-18T16:20:32,573   /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2020-09-18T16:20:32,573    #warning "Using deprecated NumPy API, disable it with " \
2020-09-18T16:20:32,573     ^~~~~~~
2020-09-18T16:20:42,596   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/megalodon/_decode.o -o build/lib.linux-armv7l-3.7/megalodon/decode.cpython-37m-arm-linux-gnueabihf.so
2020-09-18T16:20:42,755   installing to build/bdist.linux-armv7l/wheel
2020-09-18T16:20:42,755   running install
2020-09-18T16:20:42,756   running install_lib
2020-09-18T16:20:42,761   creating build/bdist.linux-armv7l
2020-09-18T16:20:42,762   creating build/bdist.linux-armv7l/wheel
2020-09-18T16:20:42,765   creating build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-18T16:20:42,766   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_create_ground_truth.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-18T16:20:42,769   copying build/lib.linux-armv7l-3.7/megalodon_extras/variants_resolve.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-18T16:20:42,772   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_merge_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-18T16:20:42,774   copying build/lib.linux-armv7l-3.7/megalodon_extras/merge_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-18T16:20:42,777   copying build/lib.linux-armv7l-3.7/megalodon_extras/__init__.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-18T16:20:42,779   copying build/lib.linux-armv7l-3.7/megalodon_extras/validate_aggregated_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-18T16:20:42,782   copying build/lib.linux-armv7l-3.7/megalodon_extras/per_read_text_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-18T16:20:42,784   copying build/lib.linux-armv7l-3.7/megalodon_extras/variants_index_database.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-18T16:20:42,787   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_per_site_thresholds.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-18T16:20:42,789   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_update_database.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-18T16:20:42,792   copying build/lib.linux-armv7l-3.7/megalodon_extras/aggregate_run.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-18T16:20:42,794   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_describe_alphabet.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-18T16:20:42,797   copying build/lib.linux-armv7l-3.7/megalodon_extras/merge_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-18T16:20:42,800   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_estimate_threshold.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-18T16:20:42,802   copying build/lib.linux-armv7l-3.7/megalodon_extras/__main__.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-18T16:20:42,805   copying build/lib.linux-armv7l-3.7/megalodon_extras/variants_atomize.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-18T16:20:42,807   copying build/lib.linux-armv7l-3.7/megalodon_extras/phase_variants_whatshap_filter.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-18T16:20:42,810   copying build/lib.linux-armv7l-3.7/megalodon_extras/variants_heterozygous_factor.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-18T16:20:42,812   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_generate_variant_stats.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-18T16:20:42,816   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_split_by_motif.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-18T16:20:42,819   copying build/lib.linux-armv7l-3.7/megalodon_extras/validate_compare_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-18T16:20:42,822   copying build/lib.linux-armv7l-3.7/megalodon_extras/_extras_parsers.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-18T16:20:42,826   copying build/lib.linux-armv7l-3.7/megalodon_extras/per_read_text_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-18T16:20:42,828   copying build/lib.linux-armv7l-3.7/megalodon_extras/phase_variants_extract_haplotype_reads.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-18T16:20:42,831   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-18T16:20:42,833   copying build/lib.linux-armv7l-3.7/megalodon_extras/phase_variants_merge_haploid_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-18T16:20:42,837   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_generate_modified_base_stats.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-18T16:20:42,840   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_index_database.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-18T16:20:42,842   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-18T16:20:42,845   copying build/lib.linux-armv7l-3.7/megalodon_extras/validate_results.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-18T16:20:42,849   creating build/bdist.linux-armv7l/wheel/megalodon
2020-09-18T16:20:42,850   copying build/lib.linux-armv7l-3.7/megalodon/mods.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-18T16:20:42,857   copying build/lib.linux-armv7l-3.7/megalodon/__init__.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-18T16:20:42,859   copying build/lib.linux-armv7l-3.7/megalodon/backends.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-18T16:20:42,862   copying build/lib.linux-armv7l-3.7/megalodon/signal_mapping.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-18T16:20:42,864   copying build/lib.linux-armv7l-3.7/megalodon/_version.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-18T16:20:42,866   copying build/lib.linux-armv7l-3.7/megalodon/logging.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-18T16:20:42,868   copying build/lib.linux-armv7l-3.7/megalodon/variants.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-18T16:20:42,872   copying build/lib.linux-armv7l-3.7/megalodon/__main__.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-18T16:20:42,875   copying build/lib.linux-armv7l-3.7/megalodon/aggregate.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-18T16:20:42,878   copying build/lib.linux-armv7l-3.7/megalodon/megalodon_helper.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-18T16:20:42,882   copying build/lib.linux-armv7l-3.7/megalodon/megalodon.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-18T16:20:42,887   copying build/lib.linux-armv7l-3.7/megalodon/fast5_io.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-18T16:20:42,889   copying build/lib.linux-armv7l-3.7/megalodon/mapping.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-18T16:20:42,892   copying build/lib.linux-armv7l-3.7/megalodon/decode.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-18T16:20:42,908   copying build/lib.linux-armv7l-3.7/megalodon/calibration.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-18T16:20:42,911   copying build/lib.linux-armv7l-3.7/megalodon/megalodon_multiprocessing.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-18T16:20:42,914   creating build/bdist.linux-armv7l/wheel/megalodon/model_data
2020-09-18T16:20:42,915   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-18T16:20:42,916   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-18T16:20:42,919   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-18T16:20:42,944   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-18T16:20:42,947   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-18T16:20:42,954   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-09-18T16:20:42,955   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-09-18T16:20:42,961   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-09-18T16:20:42,965   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-09-18T16:20:42,966   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-09-18T16:20:42,983   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-09-18T16:20:42,990   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-09-18T16:20:42,990   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-09-18T16:20:43,008   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-09-18T16:20:43,015   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-09-18T16:20:43,016   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-09-18T16:20:43,033   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-09-18T16:20:43,039   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-09-18T16:20:43,040   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-09-18T16:20:43,058   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-09-18T16:20:43,065   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-18T16:20:43,066   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-18T16:20:43,072   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-18T16:20:43,091   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-18T16:20:43,095   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-18T16:20:43,101   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-09-18T16:20:43,102   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-09-18T16:20:43,105   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-09-18T16:20:43,109   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-18T16:20:43,111   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-18T16:20:43,118   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-18T16:20:43,139   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-18T16:20:43,144   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-18T16:20:43,150   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-09-18T16:20:43,151   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-09-18T16:20:43,170   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-09-18T16:20:43,179   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-09-18T16:20:43,180   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-09-18T16:20:43,201   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-09-18T16:20:43,207   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-09-18T16:20:43,208   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-09-18T16:20:43,211   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-09-18T16:20:43,215   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-09-18T16:20:43,217   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-09-18T16:20:43,238   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-09-18T16:20:43,245   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-09-18T16:20:43,245   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-09-18T16:20:43,265   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-09-18T16:20:43,270   running install_egg_info
2020-09-18T16:20:43,290   running egg_info
2020-09-18T16:20:43,291   writing megalodon.egg-info/PKG-INFO
2020-09-18T16:20:43,294   writing dependency_links to megalodon.egg-info/dependency_links.txt
2020-09-18T16:20:43,295   writing entry points to megalodon.egg-info/entry_points.txt
2020-09-18T16:20:43,297   writing requirements to megalodon.egg-info/requires.txt
2020-09-18T16:20:43,298   writing top-level names to megalodon.egg-info/top_level.txt
2020-09-18T16:20:43,318   reading manifest file 'megalodon.egg-info/SOURCES.txt'
2020-09-18T16:20:43,322   reading manifest template 'MANIFEST.in'
2020-09-18T16:20:43,330   writing manifest file 'megalodon.egg-info/SOURCES.txt'
2020-09-18T16:20:43,332   Copying megalodon.egg-info to build/bdist.linux-armv7l/wheel/megalodon-2.2.2-py3.7.egg-info
2020-09-18T16:20:43,351   running install_scripts
2020-09-18T16:20:43,415   adding license file "LICENCE.txt" (matched pattern "LICEN[CS]E*")
2020-09-18T16:20:43,422   creating build/bdist.linux-armv7l/wheel/megalodon-2.2.2.dist-info/WHEEL
2020-09-18T16:20:43,425   creating '/tmp/pip-wheel-d424urht/megalodon-2.2.2-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-09-18T16:20:43,428   adding 'megalodon/__init__.py'
2020-09-18T16:20:43,431   adding 'megalodon/__main__.py'
2020-09-18T16:20:43,432   adding 'megalodon/_version.py'
2020-09-18T16:20:43,434   adding 'megalodon/aggregate.py'
2020-09-18T16:20:43,441   adding 'megalodon/backends.py'
2020-09-18T16:20:43,444   adding 'megalodon/calibration.py'
2020-09-18T16:20:43,567   adding 'megalodon/decode.cpython-37m-arm-linux-gnueabihf.so'
2020-09-18T16:20:43,572   adding 'megalodon/fast5_io.py'
2020-09-18T16:20:43,574   adding 'megalodon/logging.py'
2020-09-18T16:20:43,577   adding 'megalodon/mapping.py'
2020-09-18T16:20:43,583   adding 'megalodon/megalodon.py'
2020-09-18T16:20:43,587   adding 'megalodon/megalodon_helper.py'
2020-09-18T16:20:43,589   adding 'megalodon/megalodon_multiprocessing.py'
2020-09-18T16:20:43,599   adding 'megalodon/mods.py'
2020-09-18T16:20:43,601   adding 'megalodon/signal_mapping.py'
2020-09-18T16:20:43,612   adding 'megalodon/variants.py'
2020-09-18T16:20:43,672   adding 'megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.npz'
2020-09-18T16:20:43,698   adding 'megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.pdf'
2020-09-18T16:20:43,781   adding 'megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.npz'
2020-09-18T16:20:43,810   adding 'megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf'
2020-09-18T16:20:43,857   adding 'megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.npz'
2020-09-18T16:20:43,885   adding 'megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.pdf'
2020-09-18T16:20:43,940   adding 'megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.npz'
2020-09-18T16:20:43,967   adding 'megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf'
2020-09-18T16:20:44,026   adding 'megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.npz'
2020-09-18T16:20:44,053   adding 'megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.pdf'
2020-09-18T16:20:44,108   adding 'megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.npz'
2020-09-18T16:20:44,135   adding 'megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf'
2020-09-18T16:20:44,195   adding 'megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.npz'
2020-09-18T16:20:44,222   adding 'megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.pdf'
2020-09-18T16:20:44,272   adding 'megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.npz'
2020-09-18T16:20:44,300   adding 'megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf'
2020-09-18T16:20:44,310   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.npz'
2020-09-18T16:20:44,331   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.pdf'
2020-09-18T16:20:44,389   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.npz'
2020-09-18T16:20:44,418   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.pdf'
2020-09-18T16:20:44,429   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.npz'
2020-09-18T16:20:44,450   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.pdf'
2020-09-18T16:20:44,504   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.npz'
2020-09-18T16:20:44,537   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.pdf'
2020-09-18T16:20:44,545   adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.npz'
2020-09-18T16:20:44,550   adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.pdf'
2020-09-18T16:20:44,595   adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.npz'
2020-09-18T16:20:44,623   adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.pdf'
2020-09-18T16:20:44,632   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.npz'
2020-09-18T16:20:44,653   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.pdf'
2020-09-18T16:20:44,660   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz'
2020-09-18T16:20:44,663   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf'
2020-09-18T16:20:44,667   adding 'megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz'
2020-09-18T16:20:44,670   adding 'megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf'
2020-09-18T16:20:44,673   adding 'megalodon_extras/__init__.py'
2020-09-18T16:20:44,675   adding 'megalodon_extras/__main__.py'
2020-09-18T16:20:44,679   adding 'megalodon_extras/_extras_parsers.py'
2020-09-18T16:20:44,680   adding 'megalodon_extras/aggregate_run.py'
2020-09-18T16:20:44,682   adding 'megalodon_extras/calibrate_generate_modified_base_stats.py'
2020-09-18T16:20:44,684   adding 'megalodon_extras/calibrate_generate_variant_stats.py'
2020-09-18T16:20:44,685   adding 'megalodon_extras/calibrate_merge_modified_bases.py'
2020-09-18T16:20:44,687   adding 'megalodon_extras/calibrate_modified_bases.py'
2020-09-18T16:20:44,689   adding 'megalodon_extras/calibrate_variants.py'
2020-09-18T16:20:44,691   adding 'megalodon_extras/merge_modified_bases.py'
2020-09-18T16:20:44,692   adding 'megalodon_extras/merge_variants.py'
2020-09-18T16:20:44,693   adding 'megalodon_extras/modified_bases_create_ground_truth.py'
2020-09-18T16:20:44,695   adding 'megalodon_extras/modified_bases_describe_alphabet.py'
2020-09-18T16:20:44,702   adding 'megalodon_extras/modified_bases_estimate_threshold.py'
2020-09-18T16:20:44,703   adding 'megalodon_extras/modified_bases_index_database.py'
2020-09-18T16:20:44,704   adding 'megalodon_extras/modified_bases_per_site_thresholds.py'
2020-09-18T16:20:44,706   adding 'megalodon_extras/modified_bases_split_by_motif.py'
2020-09-18T16:20:44,707   adding 'megalodon_extras/modified_bases_update_database.py'
2020-09-18T16:20:44,709   adding 'megalodon_extras/per_read_text_modified_bases.py'
2020-09-18T16:20:44,710   adding 'megalodon_extras/per_read_text_variants.py'
2020-09-18T16:20:44,711   adding 'megalodon_extras/phase_variants_extract_haplotype_reads.py'
2020-09-18T16:20:44,713   adding 'megalodon_extras/phase_variants_merge_haploid_variants.py'
2020-09-18T16:20:44,714   adding 'megalodon_extras/phase_variants_whatshap_filter.py'
2020-09-18T16:20:44,716   adding 'megalodon_extras/validate_aggregated_modified_bases.py'
2020-09-18T16:20:44,718   adding 'megalodon_extras/validate_compare_modified_bases.py'
2020-09-18T16:20:44,721   adding 'megalodon_extras/validate_results.py'
2020-09-18T16:20:44,722   adding 'megalodon_extras/variants_atomize.py'
2020-09-18T16:20:44,723   adding 'megalodon_extras/variants_heterozygous_factor.py'
2020-09-18T16:20:44,725   adding 'megalodon_extras/variants_index_database.py'
2020-09-18T16:20:44,726   adding 'megalodon_extras/variants_resolve.py'
2020-09-18T16:20:44,729   adding 'megalodon-2.2.2.dist-info/LICENCE.txt'
2020-09-18T16:20:44,731   adding 'megalodon-2.2.2.dist-info/METADATA'
2020-09-18T16:20:44,732   adding 'megalodon-2.2.2.dist-info/WHEEL'
2020-09-18T16:20:44,733   adding 'megalodon-2.2.2.dist-info/entry_points.txt'
2020-09-18T16:20:44,734   adding 'megalodon-2.2.2.dist-info/top_level.txt'
2020-09-18T16:20:44,735   adding 'megalodon-2.2.2.dist-info/RECORD'
2020-09-18T16:20:44,828   removing build/bdist.linux-armv7l/wheel
2020-09-18T16:20:45,138   Building wheel for megalodon (setup.py): finished with status 'done'
2020-09-18T16:20:45,208   Created wheel for megalodon: filename=megalodon-2.2.2-cp37-cp37m-linux_armv7l.whl size=6721569 sha256=352414fe6b09ba7868e9c2d9b23cabded2681d5ad6a829bf5b248fe04b4f12b3
2020-09-18T16:20:45,209   Stored in directory: /tmp/pip-ephem-wheel-cache-p8zb36lh/wheels/97/23/b3/26b2c7862a948f00ccce488a357b2fe18b1808a6cfd0e42846
2020-09-18T16:20:45,211 Successfully built megalodon
2020-09-18T16:20:45,424 Removed build tracker: '/tmp/pip-req-tracker-mgbrmtdk'