2020-09-20T04:13:33,727 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-09-20T04:13:34,424 Created temporary directory: /tmp/pip-ephem-wheel-cache-lcxl13on
2020-09-20T04:13:34,429 Created temporary directory: /tmp/pip-req-tracker-1xu1myrr
2020-09-20T04:13:34,430 Initialized build tracking at /tmp/pip-req-tracker-1xu1myrr
2020-09-20T04:13:34,430 Created build tracker: /tmp/pip-req-tracker-1xu1myrr
2020-09-20T04:13:34,431 Entered build tracker: /tmp/pip-req-tracker-1xu1myrr
2020-09-20T04:13:34,432 Created temporary directory: /tmp/pip-wheel-di74wk1w
2020-09-20T04:13:34,449 1 location(s) to search for versions of pytopol:
2020-09-20T04:13:34,449 * https://pypi.org/simple/pytopol/
2020-09-20T04:13:34,449 Fetching project page and analyzing links: https://pypi.org/simple/pytopol/
2020-09-20T04:13:34,451 Getting page https://pypi.org/simple/pytopol/
2020-09-20T04:13:34,456 Found index url https://pypi.org/simple
2020-09-20T04:13:34,778   Found link https://files.pythonhosted.org/packages/2a/e9/8920ea3608c7407fe78ac58ec83a32c8b01975a61db2b74ec97452c645a9/pytopol-0.1.0.tar.gz#sha256=3873bd0c86b133c407d7d2aa5ac2f62ac86a854350db742e24ff9ed4b7d80552 (from https://pypi.org/simple/pytopol/), version: 0.1.0
2020-09-20T04:13:34,779   Found link https://files.pythonhosted.org/packages/b1/59/cac6607423d075cacef478b3bb5e16694369ca1889b341e59c2f1406a90c/pytopol-0.1.1.tar.gz#sha256=734b06824d12dbc115d8ec504bcef331023b6f0e26ebd916feb0545c003e26e4 (from https://pypi.org/simple/pytopol/), version: 0.1.1
2020-09-20T04:13:34,780   Found link https://files.pythonhosted.org/packages/d1/90/cf49e470121c37777af8f72b1646dc8d48edc8aef148ab6ed50b240cbf65/pytopol-0.1.2.tar.gz#sha256=c72404d327ce6d1ccd0d9d32b4ae57b7f305fbcb8c9cc0b67ffaff83f3e4191f (from https://pypi.org/simple/pytopol/), version: 0.1.2
2020-09-20T04:13:34,781   Found link https://files.pythonhosted.org/packages/09/23/24d4d609587ad13b51fc2f3ae1432cbc195f904da7dd5db34d48b512727e/pytopol-0.1.3.tar.gz#sha256=7fdd192459da7f9e50114d960ceefced25de5eecd13933844e6769b1fe37d8ad (from https://pypi.org/simple/pytopol/), version: 0.1.3
2020-09-20T04:13:34,781   Found link https://files.pythonhosted.org/packages/53/41/5b346bc93f1a41fced90dfe2db82000aa6d056ec9fcb0127fd40492f1087/pytopol-0.1.4.tar.gz#sha256=59ec1a97cae39e8f0f71b270ad7a13df50ae85bf2771b9f1974c7afcbc0516fc (from https://pypi.org/simple/pytopol/), version: 0.1.4
2020-09-20T04:13:34,782   Found link https://files.pythonhosted.org/packages/99/14/0952a35cf07b642cc7a1fc4f44afcb9315e02276c4a86f961e55a8811c0c/pytopol-0.1.5.tar.gz#sha256=7eb83b5971af074ba64634b7befe5e1ec791ddc61361437b7b2fa15eaa9c789f (from https://pypi.org/simple/pytopol/), version: 0.1.5
2020-09-20T04:13:34,783   Found link https://files.pythonhosted.org/packages/d6/dd/e2633726d2ee8613aaac04512494e140444d7e1004b6b34750bc5ca3ef5c/pytopol-0.1.6.tar.gz#sha256=e9cc2c5499099ebedbc4d0335a340e367fa56ba9b947421aa05e211e407ec1b8 (from https://pypi.org/simple/pytopol/), version: 0.1.6
2020-09-20T04:13:34,784   Found link https://files.pythonhosted.org/packages/8e/c9/9bac7b593d92ae112e00fc78308a79d857a5d56a8b4e4008ecf7892b5ab0/pytopol-0.1.7.tar.gz#sha256=118ec98b99a5f219c455c0c8f58a60b3f73234fcbabc8951468a4908d1ce48b8 (from https://pypi.org/simple/pytopol/), version: 0.1.7
2020-09-20T04:13:34,830 Given no hashes to check 1 links for project 'pytopol': discarding no candidates
2020-09-20T04:13:34,833 Using version 0.1.0 (newest of versions: 0.1.0)
2020-09-20T04:13:34,847 Collecting pytopol==0.1.0
2020-09-20T04:13:34,852   Created temporary directory: /tmp/pip-unpack-l2th916a
2020-09-20T04:13:35,075   Downloading pytopol-0.1.0.tar.gz (18 kB)
2020-09-20T04:13:35,242   Added pytopol==0.1.0 from https://files.pythonhosted.org/packages/2a/e9/8920ea3608c7407fe78ac58ec83a32c8b01975a61db2b74ec97452c645a9/pytopol-0.1.0.tar.gz#sha256=3873bd0c86b133c407d7d2aa5ac2f62ac86a854350db742e24ff9ed4b7d80552 to build tracker '/tmp/pip-req-tracker-1xu1myrr'
2020-09-20T04:13:35,244     Running setup.py (path:/tmp/pip-wheel-di74wk1w/pytopol/setup.py) egg_info for package pytopol
2020-09-20T04:13:35,246     Created temporary directory: /tmp/pip-pip-egg-info-t5naf8yh
2020-09-20T04:13:35,246     Running command python setup.py egg_info
2020-09-20T04:13:37,747     running egg_info
2020-09-20T04:13:37,753     creating /tmp/pip-pip-egg-info-t5naf8yh/pytopol.egg-info
2020-09-20T04:13:37,755     writing /tmp/pip-pip-egg-info-t5naf8yh/pytopol.egg-info/PKG-INFO
2020-09-20T04:13:37,761     writing dependency_links to /tmp/pip-pip-egg-info-t5naf8yh/pytopol.egg-info/dependency_links.txt
2020-09-20T04:13:37,763     writing top-level names to /tmp/pip-pip-egg-info-t5naf8yh/pytopol.egg-info/top_level.txt
2020-09-20T04:13:37,770     writing manifest file '/tmp/pip-pip-egg-info-t5naf8yh/pytopol.egg-info/SOURCES.txt'
2020-09-20T04:13:37,798     reading manifest file '/tmp/pip-pip-egg-info-t5naf8yh/pytopol.egg-info/SOURCES.txt'
2020-09-20T04:13:37,801     reading manifest template 'MANIFEST.in'
2020-09-20T04:13:37,804     warning: no files found matching 'README.rst'
2020-09-20T04:13:37,809     writing manifest file '/tmp/pip-pip-egg-info-t5naf8yh/pytopol.egg-info/SOURCES.txt'
2020-09-20T04:13:37,951   Source in /tmp/pip-wheel-di74wk1w/pytopol has version 0.1.0, which satisfies requirement pytopol==0.1.0 from https://files.pythonhosted.org/packages/2a/e9/8920ea3608c7407fe78ac58ec83a32c8b01975a61db2b74ec97452c645a9/pytopol-0.1.0.tar.gz#sha256=3873bd0c86b133c407d7d2aa5ac2f62ac86a854350db742e24ff9ed4b7d80552
2020-09-20T04:13:37,953   Removed pytopol==0.1.0 from https://files.pythonhosted.org/packages/2a/e9/8920ea3608c7407fe78ac58ec83a32c8b01975a61db2b74ec97452c645a9/pytopol-0.1.0.tar.gz#sha256=3873bd0c86b133c407d7d2aa5ac2f62ac86a854350db742e24ff9ed4b7d80552 from build tracker '/tmp/pip-req-tracker-1xu1myrr'
2020-09-20T04:13:37,957 Building wheels for collected packages: pytopol
2020-09-20T04:13:37,966   Created temporary directory: /tmp/pip-wheel-7lxgojyf
2020-09-20T04:13:37,967   Building wheel for pytopol (setup.py): started
2020-09-20T04:13:37,968   Destination directory: /tmp/pip-wheel-7lxgojyf
2020-09-20T04:13:37,968   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-di74wk1w/pytopol/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-di74wk1w/pytopol/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-7lxgojyf
2020-09-20T04:13:40,509   running bdist_wheel
2020-09-20T04:13:40,520   running build
2020-09-20T04:13:40,520   running build_py
2020-09-20T04:13:40,524   creating build
2020-09-20T04:13:40,525   creating build/lib
2020-09-20T04:13:40,527   creating build/lib/pytopol
2020-09-20T04:13:40,529   copying pytopol/psf.py -> build/lib/pytopol
2020-09-20T04:13:40,535   copying pytopol/grotop.py -> build/lib/pytopol
2020-09-20T04:13:40,541   copying pytopol/par.py -> build/lib/pytopol
2020-09-20T04:13:40,546   copying pytopol/__init__.py -> build/lib/pytopol
2020-09-20T04:13:40,550   copying pytopol/blocks.py -> build/lib/pytopol
2020-09-20T04:13:40,555   copying pytopol/charmmpar.py -> build/lib/pytopol
2020-09-20T04:13:40,561   copying pytopol/pdb.py -> build/lib/pytopol
2020-09-20T04:13:40,568   copying pytopol/utils.py -> build/lib/pytopol
2020-09-20T04:13:40,572   running egg_info
2020-09-20T04:13:40,603   writing top-level names to pytopol.egg-info/top_level.txt
2020-09-20T04:13:40,607   writing dependency_links to pytopol.egg-info/dependency_links.txt
2020-09-20T04:13:40,610   writing pytopol.egg-info/PKG-INFO
2020-09-20T04:13:40,624   reading manifest file 'pytopol.egg-info/SOURCES.txt'
2020-09-20T04:13:40,629   reading manifest template 'MANIFEST.in'
2020-09-20T04:13:40,631   warning: no files found matching 'README.rst'
2020-09-20T04:13:40,637   writing manifest file 'pytopol.egg-info/SOURCES.txt'
2020-09-20T04:13:40,642   running build_scripts
2020-09-20T04:13:40,643   creating build/scripts-3.5
2020-09-20T04:13:40,646   copying and adjusting scripts/psf2top.py -> build/scripts-3.5
2020-09-20T04:13:40,648   changing mode of build/scripts-3.5/psf2top.py from 644 to 755
2020-09-20T04:13:40,654   installing to build/bdist.linux-armv7l/wheel
2020-09-20T04:13:40,655   running install
2020-09-20T04:13:40,657   running install_lib
2020-09-20T04:13:40,665   creating build/bdist.linux-armv7l
2020-09-20T04:13:40,666   creating build/bdist.linux-armv7l/wheel
2020-09-20T04:13:40,669   creating build/bdist.linux-armv7l/wheel/pytopol
2020-09-20T04:13:40,672   copying build/lib/pytopol/psf.py -> build/bdist.linux-armv7l/wheel/pytopol
2020-09-20T04:13:40,678   copying build/lib/pytopol/grotop.py -> build/bdist.linux-armv7l/wheel/pytopol
2020-09-20T04:13:40,684   copying build/lib/pytopol/par.py -> build/bdist.linux-armv7l/wheel/pytopol
2020-09-20T04:13:40,691   copying build/lib/pytopol/__init__.py -> build/bdist.linux-armv7l/wheel/pytopol
2020-09-20T04:13:40,697   copying build/lib/pytopol/blocks.py -> build/bdist.linux-armv7l/wheel/pytopol
2020-09-20T04:13:40,703   copying build/lib/pytopol/charmmpar.py -> build/bdist.linux-armv7l/wheel/pytopol
2020-09-20T04:13:40,709   copying build/lib/pytopol/pdb.py -> build/bdist.linux-armv7l/wheel/pytopol
2020-09-20T04:13:40,714   copying build/lib/pytopol/utils.py -> build/bdist.linux-armv7l/wheel/pytopol
2020-09-20T04:13:40,718   running install_egg_info
2020-09-20T04:13:40,734   Copying pytopol.egg-info to build/bdist.linux-armv7l/wheel/pytopol-0.1.0-py3.5.egg-info
2020-09-20T04:13:40,758   running install_scripts
2020-09-20T04:13:40,892   creating build/bdist.linux-armv7l/wheel/pytopol-0.1.0.data
2020-09-20T04:13:40,893   creating build/bdist.linux-armv7l/wheel/pytopol-0.1.0.data/scripts
2020-09-20T04:13:40,895   copying build/scripts-3.5/psf2top.py -> build/bdist.linux-armv7l/wheel/pytopol-0.1.0.data/scripts
2020-09-20T04:13:40,900   changing mode of build/bdist.linux-armv7l/wheel/pytopol-0.1.0.data/scripts/psf2top.py to 755
2020-09-20T04:13:40,946   creating build/bdist.linux-armv7l/wheel/pytopol-0.1.0.dist-info/WHEEL
2020-09-20T04:13:41,188   Building wheel for pytopol (setup.py): finished with status 'done'
2020-09-20T04:13:41,193   Created wheel for pytopol: filename=pytopol-0.1.0-py3-none-any.whl size=19500 sha256=54df3dc04e66ad5aee53fc7382a769a8e1a6a73a9fc69e3fb352e2dbd76f9183
2020-09-20T04:13:41,194   Stored in directory: /tmp/pip-ephem-wheel-cache-lcxl13on/wheels/42/69/c2/ced3fcce254935e94f3e4a90352a8327004fe361ca25baf713
2020-09-20T04:13:41,198 Successfully built pytopol
2020-09-20T04:13:41,207 Removed build tracker: '/tmp/pip-req-tracker-1xu1myrr'