2020-09-20T05:23:15,358 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. 2020-09-20T05:23:15,958 Created temporary directory: /tmp/pip-ephem-wheel-cache-5cyra_68 2020-09-20T05:23:15,962 Created temporary directory: /tmp/pip-req-tracker-5p84c0p2 2020-09-20T05:23:15,963 Initialized build tracking at /tmp/pip-req-tracker-5p84c0p2 2020-09-20T05:23:15,963 Created build tracker: /tmp/pip-req-tracker-5p84c0p2 2020-09-20T05:23:15,964 Entered build tracker: /tmp/pip-req-tracker-5p84c0p2 2020-09-20T05:23:15,965 Created temporary directory: /tmp/pip-wheel-4sx70tio 2020-09-20T05:23:15,979 1 location(s) to search for versions of python-bioformats: 2020-09-20T05:23:15,979 * https://pypi.org/simple/python-bioformats/ 2020-09-20T05:23:15,980 Fetching project page and analyzing links: https://pypi.org/simple/python-bioformats/ 2020-09-20T05:23:15,982 Getting page https://pypi.org/simple/python-bioformats/ 2020-09-20T05:23:15,986 Found index url https://pypi.org/simple 2020-09-20T05:23:16,315 Found link https://files.pythonhosted.org/packages/e8/d2/3feffac7e5a219de826bc9e56c78b0e63f51dda1623a4a257faa19461d36/python-bioformats-1.0.0pr1.tar.gz#sha256=259117c18990f2c3d4b9c6ec5b3888942b6f9ca804932d27401272013a500ea9 (from https://pypi.org/simple/python-bioformats/), version: 1.0.0pr1 2020-09-20T05:23:16,316 Found link https://files.pythonhosted.org/packages/b9/f8/53a8a14fca7724b245a2bfcf69bd753e85c862f674b9c26b1cc75126eda7/python-bioformats-1.0.0pr2.tar.gz#sha256=9fabdd830c08f144511b4c32f26576106363c0cc993d30a098ecb64e7591631b (from https://pypi.org/simple/python-bioformats/), version: 1.0.0pr2 2020-09-20T05:23:16,317 Found link https://files.pythonhosted.org/packages/f0/c7/7fb50a03bd1a9bfb51a2743e710cd588940f59bdf9525fb6bf019a91dca0/python-bioformats-1.0.0pr3.tar.gz#sha256=f0a431d40ac9ae2573a73c938bb70e2bce256843b0c8bc9ce071f4af233d48d9 (from 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version: 1.0.0 2020-09-20T05:23:16,320 Found link https://files.pythonhosted.org/packages/c6/e8/e429243d1a79bf7f713b7e92aac4bf61eac8c0c1fd3c45b423cb66adeaea/python-bioformats-1.0.1.tar.gz#sha256=2c1b2dac2c950cfebe61e6275d7f815302f55e0ec100c5e49605e792241104bc (from https://pypi.org/simple/python-bioformats/), version: 1.0.1 2020-09-20T05:23:16,321 Found link https://files.pythonhosted.org/packages/d9/bc/4a6e02faf0aed2a913014ea7130ecf8b0c7216e9d706dd3c2853920d87cf/python-bioformats-1.0.1.zip#sha256=f372d8d10a7016a13689a27dd3de68c4978f5f6b05bf7f75602c600fe5000252 (from https://pypi.org/simple/python-bioformats/), version: 1.0.1 2020-09-20T05:23:16,322 Found link https://files.pythonhosted.org/packages/09/76/46e4aa01d4e6dd99647c2b57f280d8509bda7e56985177ca866a7001e486/python-bioformats-1.0.3.zip#sha256=9efc3ac8a7894b64d6eef9de989329cdf8a410e2febf2b1443ecc795da5fec25 (from https://pypi.org/simple/python-bioformats/), version: 1.0.3 2020-09-20T05:23:16,323 Skipping link: unsupported archive 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https://files.pythonhosted.org/packages/5b/42/ce1bf4f977028079e8f339c8fbd4a79c6edd866153b28c0f11cf0a7815e2/python-bioformats-1.3.0.tar.gz#sha256=c34d29cea01a91303d234031774238ac240b2265c38d78598d0376358e07577c (from https://pypi.org/simple/python-bioformats/), version: 1.3.0 2020-09-20T05:23:16,331 Found link https://files.pythonhosted.org/packages/9a/7e/5cc97f7a2bcb454dc9e67034c0d1946ba86254d6afbf2973317511db29e0/python-bioformats-1.3.1.tar.gz#sha256=88172d343f7dbba6cbca92bd25fdf439d3d1f6ea6746727dcb2169b56d0d2467 (from https://pypi.org/simple/python-bioformats/), version: 1.3.1 2020-09-20T05:23:16,332 Found link https://files.pythonhosted.org/packages/5b/dc/9ed11c7f8f15b7da671c3a0d49649277bf66201f43b4f27f3f0e477a06b0/python-bioformats-1.3.2.tar.gz#sha256=aec73e9edebe564d012ac2e4551a2d0ea0bc1146d00d7802650bc2d820de803b (from https://pypi.org/simple/python-bioformats/), version: 1.3.2 2020-09-20T05:23:16,332 Found link https://files.pythonhosted.org/packages/d2/5f/b74207cc249d730aba8de64a9a8786e457e5ce64416a5b3b1ccad8d9bd73/python-bioformats-1.4.0.tar.gz#sha256=cb843f18261979bd10ed2e0e595d92c9e6d4564d5a8cee31d7569e7d2d1ebd03 (from https://pypi.org/simple/python-bioformats/), version: 1.4.0 2020-09-20T05:23:16,333 Found link https://files.pythonhosted.org/packages/6a/82/5dd3403118d94976852004ee836f3af9635dcdb503131b0da4acff0c1341/python-bioformats-1.5.0.tar.gz#sha256=8af5adeaff467281a51ef8eface2b79bc5d60cc5b989943768da0ea17ebf7daf (from https://pypi.org/simple/python-bioformats/), version: 1.5.0 2020-09-20T05:23:16,341 Found link https://files.pythonhosted.org/packages/12/77/5bed80fa8e9841616b733ff6073446c4378741f0a1d856d673347d87a345/python_bioformats-1.5.0-py3-none-any.whl#sha256=fa557a717647d860068478fadf1c9fb2c41c05f18f46cca433cc97835cf32f3d (from https://pypi.org/simple/python-bioformats/), version: 1.5.0 2020-09-20T05:23:16,342 Found link https://files.pythonhosted.org/packages/53/d3/7e45a8e0e512b42e006cefaa199ea29e1b2c90124c2d2bf1e3aaf337919d/python-bioformats-1.5.1.tar.gz#sha256=d29e5058e9b746ba070cb5ac1cb7af9f0eb150d2e48b105c844d5b10f5361056 (from https://pypi.org/simple/python-bioformats/), version: 1.5.1 2020-09-20T05:23:16,343 Found link https://files.pythonhosted.org/packages/dd/e8/b4a3648207ea897b810a595098c314ad6666ef66c49a20281fc0fa0b2a91/python-bioformats-1.5.2.tar.gz#sha256=2fe03c2aa9ea59326a81f6e582944046cad77ee0797c9b691d39ee0b29de68ee (from https://pypi.org/simple/python-bioformats/), version: 1.5.2 2020-09-20T05:23:16,344 Skipping link: none of the wheel's tags match: py2-none-any: https://files.pythonhosted.org/packages/85/81/a6abd3e367cbbcd9419ebe476557766bc4e4aa662b2ea2def79f508c8b61/python_bioformats-1.5.2-py2-none-any.whl#sha256=4cf9f36a32e34e53c50c2baba1892fba0356300d4fd2f50fa3385b7d133b662e (from https://pypi.org/simple/python-bioformats/) 2020-09-20T05:23:16,345 Found link https://files.pythonhosted.org/packages/52/cf/b95d5952d3f00b6d3ad240fd5031a9c086468c50667d3c1c7a80bf02b541/python-bioformats-4.0.0rc3.tar.gz#sha256=6ac139866863659ff7375c43b52a314e8a413e49248bbcb1f82585f6858b598d (from https://pypi.org/simple/python-bioformats/), version: 4.0.0rc3 2020-09-20T05:23:16,346 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/30/ae/3d65f9a37d00fbcd163a69fc0d008842e65efdb505facd497cbc3f9d41e9/python_bioformats-4.0.0rc3-py3.8.egg#sha256=51de94f7b74b8fd203314ef46480faf99a8a592a6c3803e8ad75cb5fb91bbbe0 (from https://pypi.org/simple/python-bioformats/) 2020-09-20T05:23:16,346 Found link https://files.pythonhosted.org/packages/51/1b/dfcc50a914489f3ac29b0d88b329fa84a2df2f4c2ae2cefa9f9a332f10d0/python-bioformats-4.0.0rc4.tar.gz#sha256=8fd48e10fb55bf293649ce0582a890d7ea2aad02a39b7a5899d8a51004789be9 (from https://pypi.org/simple/python-bioformats/), version: 4.0.0rc4 2020-09-20T05:23:16,347 Skipping link: none of the wheel's tags match: py2-none-any: https://files.pythonhosted.org/packages/c4/10/772e58a4da51ea1c58ac1ee840d364d36d85f8552ab573847b3a6eece2a3/python_bioformats-4.0.0rc4-py2-none-any.whl#sha256=0012d647286a01b0d6a0b9d94f40e331cc77e2c946ca353d1b4812c3cd22bfdd (from https://pypi.org/simple/python-bioformats/) 2020-09-20T05:23:16,348 Found link https://files.pythonhosted.org/packages/e2/35/c1d5b33e275c0545083b8cb38213d78f85269a8a3e1859b6b36639e75693/python-bioformats-4.0.0.tar.gz#sha256=9a952de4d326d961af0a497753a4b71b2f7844605023d170c931d3624e036506 (from https://pypi.org/simple/python-bioformats/), version: 4.0.0 2020-09-20T05:23:16,349 Found link https://files.pythonhosted.org/packages/61/64/de0a193af35e7052563a5a7af50461e060780f2a9dc7311504eefe921bb1/python_bioformats-4.0.0-py3-none-any.whl#sha256=53056361d217be870e6071a1d96fecd1519c4a3a3d7c2733b65883e6f124c8d7 (from https://pypi.org/simple/python-bioformats/), version: 4.0.0 2020-09-20T05:23:16,357 Given no hashes to check 1 links for project 'python-bioformats': discarding no candidates 2020-09-20T05:23:16,359 Using version 1.0.0pr1 (newest of versions: 1.0.0pr1) 2020-09-20T05:23:16,367 Collecting python-bioformats==1.0.0pr1 2020-09-20T05:23:16,371 Created temporary directory: /tmp/pip-unpack-0rt6fpe_ 2020-09-20T05:23:17,156 Downloading python-bioformats-1.0.0pr1.tar.gz (9.2 MB) 2020-09-20T05:23:19,908 Added python-bioformats==1.0.0pr1 from https://files.pythonhosted.org/packages/e8/d2/3feffac7e5a219de826bc9e56c78b0e63f51dda1623a4a257faa19461d36/python-bioformats-1.0.0pr1.tar.gz#sha256=259117c18990f2c3d4b9c6ec5b3888942b6f9ca804932d27401272013a500ea9 to build tracker '/tmp/pip-req-tracker-5p84c0p2' 2020-09-20T05:23:19,912 Running setup.py (path:/tmp/pip-wheel-4sx70tio/python-bioformats/setup.py) egg_info for package python-bioformats 2020-09-20T05:23:19,914 Created temporary directory: /tmp/pip-pip-egg-info-ankxr3u5 2020-09-20T05:23:19,915 Running command python setup.py egg_info 2020-09-20T05:23:21,757 running egg_info 2020-09-20T05:23:21,763 creating /tmp/pip-pip-egg-info-ankxr3u5/python_bioformats.egg-info 2020-09-20T05:23:21,766 writing entry points to /tmp/pip-pip-egg-info-ankxr3u5/python_bioformats.egg-info/entry_points.txt 2020-09-20T05:23:21,768 writing /tmp/pip-pip-egg-info-ankxr3u5/python_bioformats.egg-info/PKG-INFO 2020-09-20T05:23:21,772 writing dependency_links to /tmp/pip-pip-egg-info-ankxr3u5/python_bioformats.egg-info/dependency_links.txt 2020-09-20T05:23:21,774 writing top-level names to /tmp/pip-pip-egg-info-ankxr3u5/python_bioformats.egg-info/top_level.txt 2020-09-20T05:23:21,777 writing manifest file '/tmp/pip-pip-egg-info-ankxr3u5/python_bioformats.egg-info/SOURCES.txt' 2020-09-20T05:23:22,083 reading manifest file '/tmp/pip-pip-egg-info-ankxr3u5/python_bioformats.egg-info/SOURCES.txt' 2020-09-20T05:23:22,090 writing manifest file '/tmp/pip-pip-egg-info-ankxr3u5/python_bioformats.egg-info/SOURCES.txt' 2020-09-20T05:23:22,092 /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:476: UserWarning: The version specified ('1.0.0pr1') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 2020-09-20T05:23:22,093 "details." % version 2020-09-20T05:23:22,218 Source in /tmp/pip-wheel-4sx70tio/python-bioformats has version 1.0.0pr1, which satisfies requirement python-bioformats==1.0.0pr1 from https://files.pythonhosted.org/packages/e8/d2/3feffac7e5a219de826bc9e56c78b0e63f51dda1623a4a257faa19461d36/python-bioformats-1.0.0pr1.tar.gz#sha256=259117c18990f2c3d4b9c6ec5b3888942b6f9ca804932d27401272013a500ea9 2020-09-20T05:23:22,220 Removed python-bioformats==1.0.0pr1 from https://files.pythonhosted.org/packages/e8/d2/3feffac7e5a219de826bc9e56c78b0e63f51dda1623a4a257faa19461d36/python-bioformats-1.0.0pr1.tar.gz#sha256=259117c18990f2c3d4b9c6ec5b3888942b6f9ca804932d27401272013a500ea9 from build tracker '/tmp/pip-req-tracker-5p84c0p2' 2020-09-20T05:23:22,223 Building wheels for collected packages: python-bioformats 2020-09-20T05:23:22,232 Created temporary directory: /tmp/pip-wheel-qgmalhmf 2020-09-20T05:23:22,233 Building wheel for python-bioformats (setup.py): started 2020-09-20T05:23:22,233 Destination directory: /tmp/pip-wheel-qgmalhmf 2020-09-20T05:23:22,234 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-4sx70tio/python-bioformats/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-4sx70tio/python-bioformats/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-qgmalhmf 2020-09-20T05:23:24,020 /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:476: UserWarning: The version specified ('1.0.0pr1') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 2020-09-20T05:23:24,021 "details." % version 2020-09-20T05:23:24,093 running bdist_wheel 2020-09-20T05:23:24,106 running build 2020-09-20T05:23:24,106 running build_py 2020-09-20T05:23:24,395 creating build 2020-09-20T05:23:24,396 creating build/lib 2020-09-20T05:23:24,397 creating build/lib/bioformats 2020-09-20T05:23:24,398 copying bioformats/noseplugin.py -> build/lib/bioformats 2020-09-20T05:23:24,402 copying bioformats/formatwriter.py -> build/lib/bioformats 2020-09-20T05:23:24,407 copying bioformats/formatreader.py -> build/lib/bioformats 2020-09-20T05:23:24,412 copying bioformats/__init__.py -> build/lib/bioformats 2020-09-20T05:23:24,416 copying bioformats/metadatatools.py -> build/lib/bioformats 2020-09-20T05:23:24,422 copying bioformats/omexml.py -> build/lib/bioformats 2020-09-20T05:23:24,430 copying bioformats/log4j.py -> build/lib/bioformats 2020-09-20T05:23:24,437 creating build/lib/bioformats/jars 2020-09-20T05:23:24,439 copying bioformats/jars/loci_tools.jar -> build/lib/bioformats/jars 2020-09-20T05:23:24,870 installing to build/bdist.linux-armv7l/wheel 2020-09-20T05:23:24,871 running install 2020-09-20T05:23:24,873 running install_lib 2020-09-20T05:23:24,880 creating build/bdist.linux-armv7l 2020-09-20T05:23:24,880 creating build/bdist.linux-armv7l/wheel 2020-09-20T05:23:24,883 creating build/bdist.linux-armv7l/wheel/bioformats 2020-09-20T05:23:24,885 copying build/lib/bioformats/noseplugin.py -> build/bdist.linux-armv7l/wheel/bioformats 2020-09-20T05:23:24,889 copying build/lib/bioformats/formatwriter.py -> build/bdist.linux-armv7l/wheel/bioformats 2020-09-20T05:23:24,893 copying build/lib/bioformats/formatreader.py -> build/bdist.linux-armv7l/wheel/bioformats 2020-09-20T05:23:24,898 copying build/lib/bioformats/__init__.py -> build/bdist.linux-armv7l/wheel/bioformats 2020-09-20T05:23:24,902 copying build/lib/bioformats/metadatatools.py -> build/bdist.linux-armv7l/wheel/bioformats 2020-09-20T05:23:24,906 copying build/lib/bioformats/omexml.py -> build/bdist.linux-armv7l/wheel/bioformats 2020-09-20T05:23:24,911 copying build/lib/bioformats/log4j.py -> build/bdist.linux-armv7l/wheel/bioformats 2020-09-20T05:23:24,915 creating build/bdist.linux-armv7l/wheel/bioformats/jars 2020-09-20T05:23:24,917 copying build/lib/bioformats/jars/loci_tools.jar -> build/bdist.linux-armv7l/wheel/bioformats/jars 2020-09-20T05:23:25,341 running install_egg_info 2020-09-20T05:23:25,379 running egg_info 2020-09-20T05:23:25,382 writing top-level names to python_bioformats.egg-info/top_level.txt 2020-09-20T05:23:25,383 writing dependency_links to python_bioformats.egg-info/dependency_links.txt 2020-09-20T05:23:25,386 writing python_bioformats.egg-info/PKG-INFO 2020-09-20T05:23:25,389 writing entry points to python_bioformats.egg-info/entry_points.txt 2020-09-20T05:23:25,396 reading manifest file 'python_bioformats.egg-info/SOURCES.txt' 2020-09-20T05:23:25,404 writing manifest file 'python_bioformats.egg-info/SOURCES.txt' 2020-09-20T05:23:25,407 Copying python_bioformats.egg-info to build/bdist.linux-armv7l/wheel/python_bioformats-1.0.0pr1-py3.5.egg-info 2020-09-20T05:23:25,424 running install_scripts 2020-09-20T05:23:25,597 creating build/bdist.linux-armv7l/wheel/python_bioformats-1.0.0pr1.dist-info/WHEEL 2020-09-20T05:23:27,905 Building wheel for python-bioformats (setup.py): finished with status 'done' 2020-09-20T05:23:28,039 Created wheel for python-bioformats: filename=python_bioformats-1.0.0pr1-py3-none-any.whl size=9176756 sha256=0ea0a63594bb661469f73a81b1eb69d52d6de8e39621d45db9d27f2e03c7f174 2020-09-20T05:23:28,040 Stored in directory: /tmp/pip-ephem-wheel-cache-5cyra_68/wheels/a5/50/a7/b13517821cf5df2612376cc8ff8d95f3fbc6fb92c1c9754b3a 2020-09-20T05:23:28,044 Successfully built python-bioformats 2020-09-20T05:23:30,988 Removed build tracker: '/tmp/pip-req-tracker-5p84c0p2'