2020-09-20T06:02:40,513 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-09-20T06:02:41,226 Created temporary directory: /tmp/pip-ephem-wheel-cache-30jt2wsi
2020-09-20T06:02:41,231 Created temporary directory: /tmp/pip-req-tracker-9xyoiug2
2020-09-20T06:02:41,232 Initialized build tracking at /tmp/pip-req-tracker-9xyoiug2
2020-09-20T06:02:41,232 Created build tracker: /tmp/pip-req-tracker-9xyoiug2
2020-09-20T06:02:41,233 Entered build tracker: /tmp/pip-req-tracker-9xyoiug2
2020-09-20T06:02:41,234 Created temporary directory: /tmp/pip-wheel-4u6j0m4k
2020-09-20T06:02:41,251 1 location(s) to search for versions of bioscons:
2020-09-20T06:02:41,251 * https://pypi.org/simple/bioscons/
2020-09-20T06:02:41,251 Fetching project page and analyzing links: https://pypi.org/simple/bioscons/
2020-09-20T06:02:41,254 Getting page https://pypi.org/simple/bioscons/
2020-09-20T06:02:41,258 Found index url https://pypi.org/simple
2020-09-20T06:02:41,588   Found link https://files.pythonhosted.org/packages/cc/51/188f9b317426159fe3a956afbfd3c072ccc15bc2def44792e9a719c72945/bioscons-0.5.tar.gz#sha256=8b9f748ddc85e739061f1f2033ba79fba4d9e848e1dbce93dd906904e63b6769 (from https://pypi.org/simple/bioscons/), version: 0.5
2020-09-20T06:02:41,597   Skipping link: none of the wheel's tags match: py2-none-any: https://files.pythonhosted.org/packages/ed/03/156b29a20253aacb2612b85689d3eedabb564af02ecf1e01db7e44c2f8a8/bioscons-0.6-py2-none-any.whl#sha256=f45f9a34e1e63299c75aa647696778b45b5f083d0709e754a67d3b9fda58e455 (from https://pypi.org/simple/bioscons/)
2020-09-20T06:02:41,598   Found link https://files.pythonhosted.org/packages/ce/df/f1c3ae8788fe00800d3a392efd6830c5b3b91630ce5588097cf9c1bb84d3/bioscons-0.6.tar.gz#sha256=593ee9aa2f8dca24dac59ac0f9f43c6f5d93c0a8a02b8aee7d0966e544f8db0d (from https://pypi.org/simple/bioscons/), version: 0.6
2020-09-20T06:02:41,600   Skipping link: none of the wheel's tags match: py2-none-any: https://files.pythonhosted.org/packages/3b/54/7ad838081d20f4e1f754f345fdaf60045fce92235394ff5281d18169447e/bioscons-0.7-py2-none-any.whl#sha256=9823dee7dd643abdb9ce4060e25fb59e5877dbea0ef1317e372ce42119293257 (from https://pypi.org/simple/bioscons/)
2020-09-20T06:02:41,600   Found link https://files.pythonhosted.org/packages/36/4b/2a96dd49bbf7ebc8ae6c36b4ff297f42eb8f0f9bfaea4c58c6c0efa102cf/bioscons-0.7.tar.gz#sha256=0943b6ac13ee2547675dd4533e63bae4d37a0033f2379d3064c38a3c87cf15ed (from https://pypi.org/simple/bioscons/), version: 0.7
2020-09-20T06:02:41,601   Skipping link: none of the wheel's tags match: py2-none-any: https://files.pythonhosted.org/packages/1f/cd/1d06aac9431bbebab43364794f317077ed5b098375665a6706e6fe5021c2/bioscons-0.7.1-py2-none-any.whl#sha256=b161793bf10c98a11031d51f25663b51661e557d2f8642b8c250764783eb225f (from https://pypi.org/simple/bioscons/)
2020-09-20T06:02:41,602   Found link https://files.pythonhosted.org/packages/73/f3/ba6f9923b82fe05b002f29b592f7dece569d1c337c30305e195d8c719faa/bioscons-0.7.1.tar.gz#sha256=8ed6db01a892d64172458412a0267dccc6d7ddc5562c382b9aa0cd4f986f31a8 (from https://pypi.org/simple/bioscons/), version: 0.7.1
2020-09-20T06:02:41,603   Skipping link: none of the wheel's tags match: py2-none-any: https://files.pythonhosted.org/packages/85/cc/4c043835c1931911f453cb7d8a280b59f09b460e5b735d59fbe6179ddda4/bioscons-0.8-py2-none-any.whl#sha256=4185b2428a0f1835e60db4ca357ebe7fd7de016086a6f022fb41ab1dadae0a26 (from https://pypi.org/simple/bioscons/)
2020-09-20T06:02:41,604   Found link https://files.pythonhosted.org/packages/f4/1d/3c4d9f4103c35eed5cf87f068f7785c60faed7a6330a0696f029a7a4da01/bioscons-0.8.tar.gz#sha256=79c48042a6cd07b8f77e49bc8b6378ac7de01db6fb0eb698e0e1076dace9809b (from https://pypi.org/simple/bioscons/), version: 0.8
2020-09-20T06:02:41,605   Skipping link: none of the wheel's tags match: py2-none-any: https://files.pythonhosted.org/packages/0b/3f/1e0afe5de78c16864070cdf9189046e0adc1b140e1c3aaa29a3ad40b7687/bioscons-0.8.1-py2-none-any.whl#sha256=1fbf97949a2fdc6529f2624fa5dfa3d8dd72e0b2c73438af2a836981a495e5ca (from https://pypi.org/simple/bioscons/)
2020-09-20T06:02:41,606   Found link https://files.pythonhosted.org/packages/0c/67/38e7405ab95939802c1fd14299b8efa017daccb420d5bdc82199321463d8/bioscons-0.8.1.tar.gz#sha256=513b9af47e14c364a430a68ebf7dba8365305edf624ea69aff58bb2e5ab9167f (from https://pypi.org/simple/bioscons/), version: 0.8.1
2020-09-20T06:02:41,607   Found link https://files.pythonhosted.org/packages/50/f4/dab67ce0f7d9c7744004f507d4ec5b759c55ebe9e1c757fbaef31f6b01f2/bioscons-0.9.0-py3-none-any.whl#sha256=53f1b76c89b21841df1a3ec95faec6009a1b4b3a2904230cb73a669beb550f35 (from https://pypi.org/simple/bioscons/), version: 0.9.0
2020-09-20T06:02:41,608   Found link https://files.pythonhosted.org/packages/14/51/951e2f5b3e55263caaf6fbc9393d842f7fe7b5942aa24504d136d56e5ebe/bioscons-0.9.0.tar.gz#sha256=794345a6272f3295ad1cd07f185c6a28685bf5446d15e02b0a43b2f08689fbe1 (from https://pypi.org/simple/bioscons/), version: 0.9.0
2020-09-20T06:02:41,612 Given no hashes to check 1 links for project 'bioscons': discarding no candidates
2020-09-20T06:02:41,614 Using version 0.7.1 (newest of versions: 0.7.1)
2020-09-20T06:02:41,649 Collecting bioscons==0.7.1
2020-09-20T06:02:41,657   Created temporary directory: /tmp/pip-unpack-pbebdu4l
2020-09-20T06:02:41,881   Downloading bioscons-0.7.1.tar.gz (19 kB)
2020-09-20T06:02:42,027   Added bioscons==0.7.1 from https://files.pythonhosted.org/packages/73/f3/ba6f9923b82fe05b002f29b592f7dece569d1c337c30305e195d8c719faa/bioscons-0.7.1.tar.gz#sha256=8ed6db01a892d64172458412a0267dccc6d7ddc5562c382b9aa0cd4f986f31a8 to build tracker '/tmp/pip-req-tracker-9xyoiug2'
2020-09-20T06:02:42,029     Running setup.py (path:/tmp/pip-wheel-4u6j0m4k/bioscons/setup.py) egg_info for package bioscons
2020-09-20T06:02:42,031     Created temporary directory: /tmp/pip-pip-egg-info-fqo8rx_0
2020-09-20T06:02:42,033     Running command python setup.py egg_info
2020-09-20T06:02:44,176     running egg_info
2020-09-20T06:02:44,181     creating /tmp/pip-pip-egg-info-fqo8rx_0/bioscons.egg-info
2020-09-20T06:02:44,185     writing dependency_links to /tmp/pip-pip-egg-info-fqo8rx_0/bioscons.egg-info/dependency_links.txt
2020-09-20T06:02:44,188     writing /tmp/pip-pip-egg-info-fqo8rx_0/bioscons.egg-info/PKG-INFO
2020-09-20T06:02:44,192     writing top-level names to /tmp/pip-pip-egg-info-fqo8rx_0/bioscons.egg-info/top_level.txt
2020-09-20T06:02:44,197     writing manifest file '/tmp/pip-pip-egg-info-fqo8rx_0/bioscons.egg-info/SOURCES.txt'
2020-09-20T06:02:44,588     reading manifest file '/tmp/pip-pip-egg-info-fqo8rx_0/bioscons.egg-info/SOURCES.txt'
2020-09-20T06:02:44,592     reading manifest template 'MANIFEST.in'
2020-09-20T06:02:44,596     warning: no previously-included files matching '*.so' found anywhere in distribution
2020-09-20T06:02:44,599     warning: no previously-included files matching '*.pyd' found anywhere in distribution
2020-09-20T06:02:44,601     warning: no previously-included files matching '*.pyc' found anywhere in distribution
2020-09-20T06:02:44,602     warning: no previously-included files matching '.git*' found anywhere in distribution
2020-09-20T06:02:44,603     warning: no previously-included files matching '.DS_Store' found anywhere in distribution
2020-09-20T06:02:44,604     warning: no previously-included files matching '*.png' found anywhere in distribution
2020-09-20T06:02:44,610     writing manifest file '/tmp/pip-pip-egg-info-fqo8rx_0/bioscons.egg-info/SOURCES.txt'
2020-09-20T06:02:44,743   Source in /tmp/pip-wheel-4u6j0m4k/bioscons has version 0.7.1, which satisfies requirement bioscons==0.7.1 from https://files.pythonhosted.org/packages/73/f3/ba6f9923b82fe05b002f29b592f7dece569d1c337c30305e195d8c719faa/bioscons-0.7.1.tar.gz#sha256=8ed6db01a892d64172458412a0267dccc6d7ddc5562c382b9aa0cd4f986f31a8
2020-09-20T06:02:44,745   Removed bioscons==0.7.1 from https://files.pythonhosted.org/packages/73/f3/ba6f9923b82fe05b002f29b592f7dece569d1c337c30305e195d8c719faa/bioscons-0.7.1.tar.gz#sha256=8ed6db01a892d64172458412a0267dccc6d7ddc5562c382b9aa0cd4f986f31a8 from build tracker '/tmp/pip-req-tracker-9xyoiug2'
2020-09-20T06:02:44,748 Building wheels for collected packages: bioscons
2020-09-20T06:02:44,757   Created temporary directory: /tmp/pip-wheel-v9rad825
2020-09-20T06:02:44,758   Building wheel for bioscons (setup.py): started
2020-09-20T06:02:44,759   Destination directory: /tmp/pip-wheel-v9rad825
2020-09-20T06:02:44,759   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-4u6j0m4k/bioscons/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-4u6j0m4k/bioscons/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-v9rad825
2020-09-20T06:02:46,911   running bdist_wheel
2020-09-20T06:02:46,926   running build
2020-09-20T06:02:46,927   running build_py
2020-09-20T06:02:47,270   creating build
2020-09-20T06:02:47,271   creating build/lib
2020-09-20T06:02:47,272   creating build/lib/bioscons
2020-09-20T06:02:47,275   copying bioscons/raxml.py -> build/lib/bioscons
2020-09-20T06:02:47,280   copying bioscons/utils.py -> build/lib/bioscons
2020-09-20T06:02:47,285   copying bioscons/r_lang.py -> build/lib/bioscons
2020-09-20T06:02:47,289   copying bioscons/fast.py -> build/lib/bioscons
2020-09-20T06:02:47,293   copying bioscons/refpkg.py -> build/lib/bioscons
2020-09-20T06:02:47,297   copying bioscons/pplacer.py -> build/lib/bioscons
2020-09-20T06:02:47,303   copying bioscons/__init__.py -> build/lib/bioscons
2020-09-20T06:02:47,308   copying bioscons/fileutils.py -> build/lib/bioscons
2020-09-20T06:02:47,315   copying bioscons/infernal.py -> build/lib/bioscons
2020-09-20T06:02:47,323   copying bioscons/builders.py -> build/lib/bioscons
2020-09-20T06:02:47,329   copying bioscons/slurm.py -> build/lib/bioscons
2020-09-20T06:02:47,337   creating build/lib/tests
2020-09-20T06:02:47,340   copying tests/test_fileutils.py -> build/lib/tests
2020-09-20T06:02:47,344   copying tests/__init__.py -> build/lib/tests
2020-09-20T06:02:47,350   running build_scripts
2020-09-20T06:02:47,351   creating build/scripts-3.5
2020-09-20T06:02:47,355   copying and adjusting distribute_setup.py -> build/scripts-3.5
2020-09-20T06:02:47,360   changing mode of build/scripts-3.5/distribute_setup.py from 644 to 755
2020-09-20T06:02:47,366   installing to build/bdist.linux-armv7l/wheel
2020-09-20T06:02:47,367   running install
2020-09-20T06:02:47,369   running install_lib
2020-09-20T06:02:47,376   creating build/bdist.linux-armv7l
2020-09-20T06:02:47,377   creating build/bdist.linux-armv7l/wheel
2020-09-20T06:02:47,381   creating build/bdist.linux-armv7l/wheel/bioscons
2020-09-20T06:02:47,383   copying build/lib/bioscons/raxml.py -> build/bdist.linux-armv7l/wheel/bioscons
2020-09-20T06:02:47,388   copying build/lib/bioscons/utils.py -> build/bdist.linux-armv7l/wheel/bioscons
2020-09-20T06:02:47,393   copying build/lib/bioscons/r_lang.py -> build/bdist.linux-armv7l/wheel/bioscons
2020-09-20T06:02:47,397   copying build/lib/bioscons/fast.py -> build/bdist.linux-armv7l/wheel/bioscons
2020-09-20T06:02:47,402   copying build/lib/bioscons/refpkg.py -> build/bdist.linux-armv7l/wheel/bioscons
2020-09-20T06:02:47,407   copying build/lib/bioscons/pplacer.py -> build/bdist.linux-armv7l/wheel/bioscons
2020-09-20T06:02:47,414   copying build/lib/bioscons/__init__.py -> build/bdist.linux-armv7l/wheel/bioscons
2020-09-20T06:02:47,419   copying build/lib/bioscons/fileutils.py -> build/bdist.linux-armv7l/wheel/bioscons
2020-09-20T06:02:47,425   copying build/lib/bioscons/infernal.py -> build/bdist.linux-armv7l/wheel/bioscons
2020-09-20T06:02:47,431   copying build/lib/bioscons/builders.py -> build/bdist.linux-armv7l/wheel/bioscons
2020-09-20T06:02:47,435   copying build/lib/bioscons/slurm.py -> build/bdist.linux-armv7l/wheel/bioscons
2020-09-20T06:02:47,441   creating build/bdist.linux-armv7l/wheel/tests
2020-09-20T06:02:47,444   copying build/lib/tests/test_fileutils.py -> build/bdist.linux-armv7l/wheel/tests
2020-09-20T06:02:47,450   copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests
2020-09-20T06:02:47,454   running install_egg_info
2020-09-20T06:02:47,501   running egg_info
2020-09-20T06:02:47,502   writing top-level names to bioscons.egg-info/top_level.txt
2020-09-20T06:02:47,504   writing bioscons.egg-info/PKG-INFO
2020-09-20T06:02:47,509   writing dependency_links to bioscons.egg-info/dependency_links.txt
2020-09-20T06:02:47,522   reading manifest file 'bioscons.egg-info/SOURCES.txt'
2020-09-20T06:02:47,526   reading manifest template 'MANIFEST.in'
2020-09-20T06:02:47,529   warning: no previously-included files matching '*.so' found anywhere in distribution
2020-09-20T06:02:47,530   warning: no previously-included files matching '*.pyd' found anywhere in distribution
2020-09-20T06:02:47,531   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2020-09-20T06:02:47,533   warning: no previously-included files matching '.git*' found anywhere in distribution
2020-09-20T06:02:47,534   warning: no previously-included files matching '.DS_Store' found anywhere in distribution
2020-09-20T06:02:47,536   warning: no previously-included files matching '*.png' found anywhere in distribution
2020-09-20T06:02:47,542   writing manifest file 'bioscons.egg-info/SOURCES.txt'
2020-09-20T06:02:47,545   Copying bioscons.egg-info to build/bdist.linux-armv7l/wheel/bioscons-0.7.1-py3.5.egg-info
2020-09-20T06:02:47,567   running install_scripts
2020-09-20T06:02:47,706   creating build/bdist.linux-armv7l/wheel/bioscons-0.7.1.data
2020-09-20T06:02:47,706   creating build/bdist.linux-armv7l/wheel/bioscons-0.7.1.data/scripts
2020-09-20T06:02:47,709   copying build/scripts-3.5/distribute_setup.py -> build/bdist.linux-armv7l/wheel/bioscons-0.7.1.data/scripts
2020-09-20T06:02:47,716   changing mode of build/bdist.linux-armv7l/wheel/bioscons-0.7.1.data/scripts/distribute_setup.py to 755
2020-09-20T06:02:47,754   creating build/bdist.linux-armv7l/wheel/bioscons-0.7.1.dist-info/WHEEL
2020-09-20T06:02:48,026   Building wheel for bioscons (setup.py): finished with status 'done'
2020-09-20T06:02:48,031   Created wheel for bioscons: filename=bioscons-0.7.1-py3-none-any.whl size=24805 sha256=6acba62977930da316687d6b4c989298c013faf4eb33f90983a63b71a31e6207
2020-09-20T06:02:48,032   Stored in directory: /tmp/pip-ephem-wheel-cache-30jt2wsi/wheels/f1/7e/33/e763d763947564516b5f717ffbd32ce20d0809ffc43d187f59
2020-09-20T06:02:48,036 Successfully built bioscons
2020-09-20T06:02:48,046 Removed build tracker: '/tmp/pip-req-tracker-9xyoiug2'