2020-09-20T06:25:52,934 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-09-20T06:25:53,612 Created temporary directory: /tmp/pip-ephem-wheel-cache-grr3k192
2020-09-20T06:25:53,617 Created temporary directory: /tmp/pip-req-tracker-w6rys41v
2020-09-20T06:25:53,618 Initialized build tracking at /tmp/pip-req-tracker-w6rys41v
2020-09-20T06:25:53,619 Created build tracker: /tmp/pip-req-tracker-w6rys41v
2020-09-20T06:25:53,619 Entered build tracker: /tmp/pip-req-tracker-w6rys41v
2020-09-20T06:25:53,620 Created temporary directory: /tmp/pip-wheel-3z4hwb_y
2020-09-20T06:25:53,637 1 location(s) to search for versions of gcap:
2020-09-20T06:25:53,637 * https://pypi.org/simple/gcap/
2020-09-20T06:25:53,638 Fetching project page and analyzing links: https://pypi.org/simple/gcap/
2020-09-20T06:25:53,640 Getting page https://pypi.org/simple/gcap/
2020-09-20T06:25:53,644 Found index url https://pypi.org/simple
2020-09-20T06:25:53,902   Found link https://files.pythonhosted.org/packages/e8/e7/ede00776de0248bfa8e320a65be598e982524d468d919e20824d9acb2495/GCAP-1.0-20131218.tar.gz#sha256=ccb60e257032a3861285216d8b8cef41dca9c2d91b41c11955f417cb93a00846 (from https://pypi.org/simple/gcap/), version: 1.0-20131218
2020-09-20T06:25:53,903   Found link https://files.pythonhosted.org/packages/52/ca/5e48f7dede15967e2a081421d52b68044f8434b43f93251fff6b8d827d19/GCAP-1.1-20140805.tar.gz#sha256=597ca131738abffe9beea306c20dc0e982e02eca8848407bf334e2f73332f46a (from https://pypi.org/simple/gcap/), version: 1.1-20140805
2020-09-20T06:25:53,913 Given no hashes to check 1 links for project 'gcap': discarding no candidates
2020-09-20T06:25:53,915 Using version 1.1.post20140805 (newest of versions: 1.1.post20140805)
2020-09-20T06:25:53,926 Collecting gcap==1.1-20140805
2020-09-20T06:25:53,934   Created temporary directory: /tmp/pip-unpack-yw5qvr6w
2020-09-20T06:25:54,203   Downloading GCAP-1.1-20140805.tar.gz (24 kB)
2020-09-20T06:25:54,447   Added gcap==1.1-20140805 from https://files.pythonhosted.org/packages/52/ca/5e48f7dede15967e2a081421d52b68044f8434b43f93251fff6b8d827d19/GCAP-1.1-20140805.tar.gz#sha256=597ca131738abffe9beea306c20dc0e982e02eca8848407bf334e2f73332f46a to build tracker '/tmp/pip-req-tracker-w6rys41v'
2020-09-20T06:25:54,449     Running setup.py (path:/tmp/pip-wheel-3z4hwb_y/gcap/setup.py) egg_info for package gcap
2020-09-20T06:25:54,450     Created temporary directory: /tmp/pip-pip-egg-info-ud7j37vw
2020-09-20T06:25:54,451     Running command python setup.py egg_info
2020-09-20T06:25:56,540     running egg_info
2020-09-20T06:25:56,546     creating /tmp/pip-pip-egg-info-ud7j37vw/GCAP.egg-info
2020-09-20T06:25:56,549     writing dependency_links to /tmp/pip-pip-egg-info-ud7j37vw/GCAP.egg-info/dependency_links.txt
2020-09-20T06:25:56,553     writing requirements to /tmp/pip-pip-egg-info-ud7j37vw/GCAP.egg-info/requires.txt
2020-09-20T06:25:56,555     writing /tmp/pip-pip-egg-info-ud7j37vw/GCAP.egg-info/PKG-INFO
2020-09-20T06:25:56,560     writing top-level names to /tmp/pip-pip-egg-info-ud7j37vw/GCAP.egg-info/top_level.txt
2020-09-20T06:25:56,564     writing manifest file '/tmp/pip-pip-egg-info-ud7j37vw/GCAP.egg-info/SOURCES.txt'
2020-09-20T06:25:56,941     reading manifest file '/tmp/pip-pip-egg-info-ud7j37vw/GCAP.egg-info/SOURCES.txt'
2020-09-20T06:25:56,951     writing manifest file '/tmp/pip-pip-egg-info-ud7j37vw/GCAP.egg-info/SOURCES.txt'
2020-09-20T06:25:57,086   Source in /tmp/pip-wheel-3z4hwb_y/gcap has version 1.1.post20140805, which satisfies requirement gcap==1.1-20140805 from https://files.pythonhosted.org/packages/52/ca/5e48f7dede15967e2a081421d52b68044f8434b43f93251fff6b8d827d19/GCAP-1.1-20140805.tar.gz#sha256=597ca131738abffe9beea306c20dc0e982e02eca8848407bf334e2f73332f46a
2020-09-20T06:25:57,088   Removed gcap==1.1-20140805 from https://files.pythonhosted.org/packages/52/ca/5e48f7dede15967e2a081421d52b68044f8434b43f93251fff6b8d827d19/GCAP-1.1-20140805.tar.gz#sha256=597ca131738abffe9beea306c20dc0e982e02eca8848407bf334e2f73332f46a from build tracker '/tmp/pip-req-tracker-w6rys41v'
2020-09-20T06:25:57,092 Building wheels for collected packages: gcap
2020-09-20T06:25:57,101   Created temporary directory: /tmp/pip-wheel-ih2lqb4p
2020-09-20T06:25:57,102   Building wheel for gcap (setup.py): started
2020-09-20T06:25:57,103   Destination directory: /tmp/pip-wheel-ih2lqb4p
2020-09-20T06:25:57,104   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-3z4hwb_y/gcap/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-3z4hwb_y/gcap/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ih2lqb4p
2020-09-20T06:25:59,245   running bdist_wheel
2020-09-20T06:25:59,259   running build
2020-09-20T06:25:59,260   running build_py
2020-09-20T06:25:59,629   creating build
2020-09-20T06:25:59,630   creating build/lib
2020-09-20T06:25:59,631   creating build/lib/gcap
2020-09-20T06:25:59,634   copying gcap/__init__.py -> build/lib/gcap
2020-09-20T06:25:59,640   creating build/lib/gcap/funcs
2020-09-20T06:25:59,642   copying gcap/funcs/peaks_calling.py -> build/lib/gcap/funcs
2020-09-20T06:25:59,649   copying gcap/funcs/__init__.py -> build/lib/gcap/funcs
2020-09-20T06:25:59,652   copying gcap/funcs/dnase_stat.py -> build/lib/gcap/funcs
2020-09-20T06:25:59,657   copying gcap/funcs/json_collection.py -> build/lib/gcap/funcs
2020-09-20T06:25:59,663   copying gcap/funcs/helpers.py -> build/lib/gcap/funcs
2020-09-20T06:25:59,668   copying gcap/funcs/filter.py -> build/lib/gcap/funcs
2020-09-20T06:25:59,674   copying gcap/funcs/config.py -> build/lib/gcap/funcs
2020-09-20T06:25:59,680   copying gcap/funcs/mapping.py -> build/lib/gcap/funcs
2020-09-20T06:25:59,685   copying gcap/funcs/sequence_quality.py -> build/lib/gcap/funcs
2020-09-20T06:25:59,693   creating build/lib/samflow
2020-09-20T06:25:59,695   copying samflow/workflow.py -> build/lib/samflow
2020-09-20T06:25:59,701   copying samflow/__init__.py -> build/lib/samflow
2020-09-20T06:25:59,704   copying samflow/command.py -> build/lib/samflow
2020-09-20T06:25:59,710   copying samflow/helper.py -> build/lib/samflow
2020-09-20T06:25:59,717   creating build/lib/gcap/static
2020-09-20T06:25:59,719   copying gcap/static/gcap_template.tex -> build/lib/gcap/static
2020-09-20T06:25:59,727   copying gcap/static/gcap.conf.filled -> build/lib/gcap/static
2020-09-20T06:25:59,733   creating build/lib/gcap/glue
2020-09-20T06:25:59,736   copying gcap/glue/narrowPeak.as -> build/lib/gcap/glue
2020-09-20T06:25:59,744   copying gcap/glue/broadPeak.as -> build/lib/gcap/glue
2020-09-20T06:25:59,756   running build_scripts
2020-09-20T06:25:59,758   creating build/scripts-3.5
2020-09-20T06:25:59,761   copying and adjusting gcap/GCAP -> build/scripts-3.5
2020-09-20T06:25:59,767   copying gcap/glue/dac_se_read_quality -> build/scripts-3.5
2020-09-20T06:25:59,773   copying gcap/glue/dac_pe_read_quality -> build/scripts-3.5
2020-09-20T06:25:59,779   copying gcap/glue/eap_run_bwa_se -> build/scripts-3.5
2020-09-20T06:25:59,786   copying gcap/glue/eap_run_bwa_pe -> build/scripts-3.5
2020-09-20T06:25:59,794   copying gcap/glue/dac_bam_se_post_filter -> build/scripts-3.5
2020-09-20T06:25:59,802   copying gcap/glue/dac_bam_pe_post_filter -> build/scripts-3.5
2020-09-20T06:25:59,810   copying gcap/glue/eap_dnase_stats -> build/scripts-3.5
2020-09-20T06:25:59,819   copying gcap/glue/eap_run_hotspot -> build/scripts-3.5
2020-09-20T06:25:59,827   copying and adjusting gcap/glue/hotspot.py -> build/scripts-3.5
2020-09-20T06:25:59,835   copying gcap/glue/dac_pbc -> build/scripts-3.5
2020-09-20T06:25:59,844   copying gcap/glue/dac_spot -> build/scripts-3.5
2020-09-20T06:25:59,853   copying gcap/glue/eap_narrowPeak_to_bigBed -> build/scripts-3.5
2020-09-20T06:25:59,862   copying gcap/glue/eap_broadPeak_to_bigBed -> build/scripts-3.5
2020-09-20T06:25:59,866   changing mode of build/scripts-3.5/GCAP from 644 to 755
2020-09-20T06:25:59,868   changing mode of build/scripts-3.5/dac_se_read_quality from 644 to 755
2020-09-20T06:25:59,869   changing mode of build/scripts-3.5/dac_pe_read_quality from 644 to 755
2020-09-20T06:25:59,870   changing mode of build/scripts-3.5/hotspot.py from 644 to 755
2020-09-20T06:25:59,880   installing to build/bdist.linux-armv7l/wheel
2020-09-20T06:25:59,881   running install
2020-09-20T06:25:59,885   running install_lib
2020-09-20T06:25:59,892   creating build/bdist.linux-armv7l
2020-09-20T06:25:59,893   creating build/bdist.linux-armv7l/wheel
2020-09-20T06:25:59,897   creating build/bdist.linux-armv7l/wheel/samflow
2020-09-20T06:25:59,899   copying build/lib/samflow/workflow.py -> build/bdist.linux-armv7l/wheel/samflow
2020-09-20T06:25:59,904   copying build/lib/samflow/__init__.py -> build/bdist.linux-armv7l/wheel/samflow
2020-09-20T06:25:59,909   copying build/lib/samflow/command.py -> build/bdist.linux-armv7l/wheel/samflow
2020-09-20T06:25:59,916   copying build/lib/samflow/helper.py -> build/bdist.linux-armv7l/wheel/samflow
2020-09-20T06:25:59,923   creating build/bdist.linux-armv7l/wheel/gcap
2020-09-20T06:25:59,925   copying build/lib/gcap/__init__.py -> build/bdist.linux-armv7l/wheel/gcap
2020-09-20T06:25:59,932   creating build/bdist.linux-armv7l/wheel/gcap/static
2020-09-20T06:25:59,934   copying build/lib/gcap/static/gcap_template.tex -> build/bdist.linux-armv7l/wheel/gcap/static
2020-09-20T06:25:59,942   copying build/lib/gcap/static/gcap.conf.filled -> build/bdist.linux-armv7l/wheel/gcap/static
2020-09-20T06:25:59,949   creating build/bdist.linux-armv7l/wheel/gcap/glue
2020-09-20T06:25:59,951   copying build/lib/gcap/glue/narrowPeak.as -> build/bdist.linux-armv7l/wheel/gcap/glue
2020-09-20T06:25:59,957   copying build/lib/gcap/glue/broadPeak.as -> build/bdist.linux-armv7l/wheel/gcap/glue
2020-09-20T06:25:59,965   creating build/bdist.linux-armv7l/wheel/gcap/funcs
2020-09-20T06:25:59,968   copying build/lib/gcap/funcs/peaks_calling.py -> build/bdist.linux-armv7l/wheel/gcap/funcs
2020-09-20T06:25:59,976   copying build/lib/gcap/funcs/__init__.py -> build/bdist.linux-armv7l/wheel/gcap/funcs
2020-09-20T06:25:59,981   copying build/lib/gcap/funcs/dnase_stat.py -> build/bdist.linux-armv7l/wheel/gcap/funcs
2020-09-20T06:25:59,987   copying build/lib/gcap/funcs/json_collection.py -> build/bdist.linux-armv7l/wheel/gcap/funcs
2020-09-20T06:25:59,995   copying build/lib/gcap/funcs/helpers.py -> build/bdist.linux-armv7l/wheel/gcap/funcs
2020-09-20T06:26:00,001   copying build/lib/gcap/funcs/filter.py -> build/bdist.linux-armv7l/wheel/gcap/funcs
2020-09-20T06:26:00,008   copying build/lib/gcap/funcs/config.py -> build/bdist.linux-armv7l/wheel/gcap/funcs
2020-09-20T06:26:00,015   copying build/lib/gcap/funcs/mapping.py -> build/bdist.linux-armv7l/wheel/gcap/funcs
2020-09-20T06:26:00,022   copying build/lib/gcap/funcs/sequence_quality.py -> build/bdist.linux-armv7l/wheel/gcap/funcs
2020-09-20T06:26:00,027   running install_egg_info
2020-09-20T06:26:00,079   running egg_info
2020-09-20T06:26:00,080   writing top-level names to GCAP.egg-info/top_level.txt
2020-09-20T06:26:00,082   writing GCAP.egg-info/PKG-INFO
2020-09-20T06:26:00,086   writing dependency_links to GCAP.egg-info/dependency_links.txt
2020-09-20T06:26:00,090   writing requirements to GCAP.egg-info/requires.txt
2020-09-20T06:26:00,104   reading manifest file 'GCAP.egg-info/SOURCES.txt'
2020-09-20T06:26:00,117   writing manifest file 'GCAP.egg-info/SOURCES.txt'
2020-09-20T06:26:00,121   Copying GCAP.egg-info to build/bdist.linux-armv7l/wheel/GCAP-1.1.post20140805-py3.5.egg-info
2020-09-20T06:26:00,144   running install_scripts
2020-09-20T06:26:00,288   creating build/bdist.linux-armv7l/wheel/GCAP-1.1.data
2020-09-20T06:26:00,289   creating build/bdist.linux-armv7l/wheel/GCAP-1.1.data/scripts
2020-09-20T06:26:00,292   copying build/scripts-3.5/dac_pbc -> build/bdist.linux-armv7l/wheel/GCAP-1.1.data/scripts
2020-09-20T06:26:00,297   copying build/scripts-3.5/hotspot.py -> build/bdist.linux-armv7l/wheel/GCAP-1.1.data/scripts
2020-09-20T06:26:00,302   copying build/scripts-3.5/eap_narrowPeak_to_bigBed -> build/bdist.linux-armv7l/wheel/GCAP-1.1.data/scripts
2020-09-20T06:26:00,307   copying build/scripts-3.5/GCAP -> build/bdist.linux-armv7l/wheel/GCAP-1.1.data/scripts
2020-09-20T06:26:00,312   copying build/scripts-3.5/eap_run_bwa_se -> build/bdist.linux-armv7l/wheel/GCAP-1.1.data/scripts
2020-09-20T06:26:00,342   copying build/scripts-3.5/dac_pe_read_quality -> build/bdist.linux-armv7l/wheel/GCAP-1.1.data/scripts
2020-09-20T06:26:00,347   copying build/scripts-3.5/dac_bam_pe_post_filter -> build/bdist.linux-armv7l/wheel/GCAP-1.1.data/scripts
2020-09-20T06:26:00,353   copying build/scripts-3.5/eap_dnase_stats -> build/bdist.linux-armv7l/wheel/GCAP-1.1.data/scripts
2020-09-20T06:26:00,359   copying build/scripts-3.5/dac_se_read_quality -> build/bdist.linux-armv7l/wheel/GCAP-1.1.data/scripts
2020-09-20T06:26:00,364   copying build/scripts-3.5/dac_spot -> build/bdist.linux-armv7l/wheel/GCAP-1.1.data/scripts
2020-09-20T06:26:00,370   copying build/scripts-3.5/eap_run_hotspot -> build/bdist.linux-armv7l/wheel/GCAP-1.1.data/scripts
2020-09-20T06:26:00,376   copying build/scripts-3.5/eap_broadPeak_to_bigBed -> build/bdist.linux-armv7l/wheel/GCAP-1.1.data/scripts
2020-09-20T06:26:00,381   copying build/scripts-3.5/dac_bam_se_post_filter -> build/bdist.linux-armv7l/wheel/GCAP-1.1.data/scripts
2020-09-20T06:26:00,387   copying build/scripts-3.5/eap_run_bwa_pe -> build/bdist.linux-armv7l/wheel/GCAP-1.1.data/scripts
2020-09-20T06:26:00,391   changing mode of build/bdist.linux-armv7l/wheel/GCAP-1.1.data/scripts/dac_pbc to 755
2020-09-20T06:26:00,393   changing mode of build/bdist.linux-armv7l/wheel/GCAP-1.1.data/scripts/hotspot.py to 755
2020-09-20T06:26:00,394   changing mode of build/bdist.linux-armv7l/wheel/GCAP-1.1.data/scripts/eap_narrowPeak_to_bigBed to 755
2020-09-20T06:26:00,395   changing mode of build/bdist.linux-armv7l/wheel/GCAP-1.1.data/scripts/GCAP to 755
2020-09-20T06:26:00,397   changing mode of build/bdist.linux-armv7l/wheel/GCAP-1.1.data/scripts/eap_run_bwa_se to 755
2020-09-20T06:26:00,398   changing mode of build/bdist.linux-armv7l/wheel/GCAP-1.1.data/scripts/dac_pe_read_quality to 755
2020-09-20T06:26:00,399   changing mode of build/bdist.linux-armv7l/wheel/GCAP-1.1.data/scripts/dac_bam_pe_post_filter to 755
2020-09-20T06:26:00,401   changing mode of build/bdist.linux-armv7l/wheel/GCAP-1.1.data/scripts/eap_dnase_stats to 755
2020-09-20T06:26:00,402   changing mode of build/bdist.linux-armv7l/wheel/GCAP-1.1.data/scripts/dac_se_read_quality to 755
2020-09-20T06:26:00,403   changing mode of build/bdist.linux-armv7l/wheel/GCAP-1.1.data/scripts/dac_spot to 755
2020-09-20T06:26:00,404   changing mode of build/bdist.linux-armv7l/wheel/GCAP-1.1.data/scripts/eap_run_hotspot to 755
2020-09-20T06:26:00,405   changing mode of build/bdist.linux-armv7l/wheel/GCAP-1.1.data/scripts/eap_broadPeak_to_bigBed to 755
2020-09-20T06:26:00,407   changing mode of build/bdist.linux-armv7l/wheel/GCAP-1.1.data/scripts/dac_bam_se_post_filter to 755
2020-09-20T06:26:00,408   changing mode of build/bdist.linux-armv7l/wheel/GCAP-1.1.data/scripts/eap_run_bwa_pe to 755
2020-09-20T06:26:00,460   creating build/bdist.linux-armv7l/wheel/GCAP-1.1.post20140805.dist-info/WHEEL
2020-09-20T06:26:00,821   Building wheel for gcap (setup.py): finished with status 'done'
2020-09-20T06:26:00,826   Created wheel for gcap: filename=GCAP-1.1.post20140805-py3-none-any.whl size=34363 sha256=7a555c3ca62cea65d8c49b2fe145ea88ba56308fa81634da56069b08e678ac50
2020-09-20T06:26:00,827   Stored in directory: /tmp/pip-ephem-wheel-cache-grr3k192/wheels/f2/d9/c7/8cc01fd164ba195e9392cd2b093b04cf6d83059e4201215d1a
2020-09-20T06:26:00,831 Successfully built gcap
2020-09-20T06:26:00,843 Removed build tracker: '/tmp/pip-req-tracker-w6rys41v'