2020-09-20T06:41:47,369 Created temporary directory: /tmp/pip-ephem-wheel-cache-55b5r4ve
2020-09-20T06:41:47,371 Created temporary directory: /tmp/pip-req-tracker-h6ybs0ht
2020-09-20T06:41:47,372 Initialized build tracking at /tmp/pip-req-tracker-h6ybs0ht
2020-09-20T06:41:47,372 Created build tracker: /tmp/pip-req-tracker-h6ybs0ht
2020-09-20T06:41:47,372 Entered build tracker: /tmp/pip-req-tracker-h6ybs0ht
2020-09-20T06:41:47,373 Created temporary directory: /tmp/pip-wheel-fyjqwoql
2020-09-20T06:41:47,381 1 location(s) to search for versions of checkm-genome:
2020-09-20T06:41:47,381 * https://pypi.org/simple/checkm-genome/
2020-09-20T06:41:47,382 Fetching project page and analyzing links: https://pypi.org/simple/checkm-genome/
2020-09-20T06:41:47,382 Getting page https://pypi.org/simple/checkm-genome/
2020-09-20T06:41:47,384 Found index url https://pypi.org/simple
2020-09-20T06:41:47,481   Found link https://files.pythonhosted.org/packages/28/18/bfa95eace6e39c78c3d59e9409a6a6bf5d6b8eb02a84fe8f1587a604cccc/checkm-genome-0.9.0.tar.gz#sha256=afdff4dfeb2702dfed0e82a79f47b892ca2a163667d1a3a76941b71eb47f23ab (from https://pypi.org/simple/checkm-genome/), version: 0.9.0
2020-09-20T06:41:47,481   Found link https://files.pythonhosted.org/packages/41/31/d1cbd54a0356a8cfabe59a3d932dc5bfc25c8a62d21e8a6c95ef5ee84a5d/checkm-genome-0.9.1.tar.gz#sha256=7aab3ef510bd9f98643b0ee9d40b39af9317860309025f28b0265617de769156 (from https://pypi.org/simple/checkm-genome/), version: 0.9.1
2020-09-20T06:41:47,482   Found link https://files.pythonhosted.org/packages/af/c9/61e0998688374f8155107e3e81cf8920658b72e2e97df8595beaf6dad498/checkm-genome-0.9.2.tar.gz#sha256=bb967c1332aee95335f68cf18320624229aead5aba1bd3141c3b9ece3acc0227 (from https://pypi.org/simple/checkm-genome/), version: 0.9.2
2020-09-20T06:41:47,482   Found link https://files.pythonhosted.org/packages/ae/51/c5173a5940663f1a25311584f322ccfd22148097eea896f3fe96071292a6/checkm-genome-0.9.4.tar.gz#sha256=60a1f602de2c50143d4a94f5e292963ff30e670f9651dda1253872d05e36d207 (from https://pypi.org/simple/checkm-genome/), version: 0.9.4
2020-09-20T06:41:47,482   Found link https://files.pythonhosted.org/packages/5c/d0/884dcda6dc25ec5b1a0dfb781b67dbf4c9cfbe2ab3ef3935b3d4cbbcd0e3/checkm-genome-0.9.5.tar.gz#sha256=b14743620f849368c2e6de3023de89bec4a45762cd5d579cf4fcd7343ac2a886 (from https://pypi.org/simple/checkm-genome/), version: 0.9.5
2020-09-20T06:41:47,483   Found link https://files.pythonhosted.org/packages/ec/7d/8ffd56d3ea47b908b869e7556f3ed2211bbd0f299ddb8bd34ee34c7cdfb2/checkm-genome-0.9.6.tar.gz#sha256=e91379d5f3ee8eb07e78d2a9b1bb44d7261ba13bc7d4ea87c8aad244b4d34570 (from https://pypi.org/simple/checkm-genome/), version: 0.9.6
2020-09-20T06:41:47,483   Found link https://files.pythonhosted.org/packages/5f/2b/d0283c04c98b60afb23a8e4220f4c99bdb5a5a4fa08e928d1e16cefc8c65/checkm-genome-0.9.7.tar.gz#sha256=c8f62d837a42be69688cb9145974ac15030addb6454a5a2843061672e9081b34 (from https://pypi.org/simple/checkm-genome/), version: 0.9.7
2020-09-20T06:41:47,483   Found link https://files.pythonhosted.org/packages/d4/0b/6b2bbcea9bb373f458ece939f7d999bbeaf47f6562f7a5b459f5b3de0ef0/checkm-genome-1.0.1.tar.gz#sha256=df1bb4217ff7039f901ba38cc92cf7e57a0c63793842bfe4fe618c7bde5c7c63 (from https://pypi.org/simple/checkm-genome/), version: 1.0.1
2020-09-20T06:41:47,484   Found link https://files.pythonhosted.org/packages/de/22/74f9a5f3c6716fb5df55e4ffe32addf3bf972771ee68e41d8b50f65bc45f/checkm-genome-1.0.2.tar.gz#sha256=ef49d0a63fde68fdad74279aa204e8b65cd0a227dca876b2f5b1c261d3c96c39 (from https://pypi.org/simple/checkm-genome/), version: 1.0.2
2020-09-20T06:41:47,484   Found link https://files.pythonhosted.org/packages/0f/28/0c0e639dbdabf29808615ffe781675b8c8376ffc176e3ec9060c53ee99bd/checkm-genome-1.0.3.tar.gz#sha256=c6a6fcc43d4360a37c94d1ec7531179378e55f6dcbe8c045509ff576d15a1e1d (from https://pypi.org/simple/checkm-genome/), version: 1.0.3
2020-09-20T06:41:47,484   Found link https://files.pythonhosted.org/packages/fe/e1/7821a08e9c5462181f4768eff196ceeab5b6cfdf40b09874cd7d42bc733d/checkm-genome-1.0.4.tar.gz#sha256=e036c7ac934de3fae1207f9fae4113cb11c87842b9477e711eba860de22ae773 (from https://pypi.org/simple/checkm-genome/), version: 1.0.4
2020-09-20T06:41:47,485   Found link https://files.pythonhosted.org/packages/d0/17/9442a51f37f3bb6f112b3dc03a6aaaca3417ec5ade8208abbccec7906757/checkm-genome-1.0.5.tar.gz#sha256=e0a08d570b3c46bd6b3d808b153ce87edae10153eef605ba879b131f0001958d (from https://pypi.org/simple/checkm-genome/), version: 1.0.5
2020-09-20T06:41:47,485   Found link https://files.pythonhosted.org/packages/55/62/35b519866fff020ef0b213e0665dc4d43cb1bb588a6575dd3270d3708095/checkm-genome-1.0.7.tar.gz#sha256=8bf038258c5b3429bcbafc1ef666d4a9ad3eaec5784213e41b46c2bdf3b0d00b (from https://pypi.org/simple/checkm-genome/), version: 1.0.7
2020-09-20T06:41:47,485   Found link https://files.pythonhosted.org/packages/e7/d4/18407c20a8f220428e9b2b42c9c5768321060965d790e2861b1a3550ac21/checkm-genome-1.0.8.tar.gz#sha256=9235dcc510139e7cf6350fa08e19c089837230a6fa7e35cf4bd3fa7ae6248ec8 (from https://pypi.org/simple/checkm-genome/), version: 1.0.8
2020-09-20T06:41:47,486   Found link https://files.pythonhosted.org/packages/a1/22/c6ffe3f10d17857c3f7125c7c2f94c0231d764e831a55684e4698147c517/checkm-genome-1.0.10.tar.gz#sha256=7fdb06c803ac0933efbbc86a775a95445b3cb6bb7b09eae4f1ae7ec77cbfbaa1 (from https://pypi.org/simple/checkm-genome/), version: 1.0.10
2020-09-20T06:41:47,486   Found link https://files.pythonhosted.org/packages/da/37/38c9a10a61ed2657a798188c83674b813d90425c73091c0106b50ce18172/checkm-genome-1.0.11.tar.gz#sha256=e475d9817d12fa771dbccc80f47758b742fc67c25261dc8ca0c0dc898c2a5190 (from https://pypi.org/simple/checkm-genome/), version: 1.0.11
2020-09-20T06:41:47,486   Found link https://files.pythonhosted.org/packages/44/cb/d6017ffa33025403c1daba046223ee3d84ea5492e99107610b970219c73c/checkm-genome-1.0.12.tar.gz#sha256=21ff9694b2c1055cb9cfa7ebaa108d9e22389090de1f0d32b60f832c058435ae (from https://pypi.org/simple/checkm-genome/), version: 1.0.12
2020-09-20T06:41:47,487   Found link https://files.pythonhosted.org/packages/db/2f/fef9adff4fd6fd52431d307a3c1095e80076a67766e6f9bba4deb573f269/checkm-genome-1.0.13.tar.gz#sha256=ffb7e4966c0fac07c7e6e7db6f6eb5b48587fa83987f8a68efbaff2afb7da82e (from https://pypi.org/simple/checkm-genome/), version: 1.0.13
2020-09-20T06:41:47,487   Found link https://files.pythonhosted.org/packages/36/1c/2bb5b99f1757e98d5d416cf8dcf72dc4ab4869406660967fd348e8c6b708/checkm-genome-1.0.15.tar.gz#sha256=b442fda2b558e3300f3512a1da903bbc5e4e6acd1a788da81e2d263c41f24be1 (from https://pypi.org/simple/checkm-genome/), version: 1.0.15
2020-09-20T06:41:47,487   Found link https://files.pythonhosted.org/packages/4a/15/84fc69c6dbab4d3ca48e7a83951d74948d6eb7a6ef46dd221d16dd80927d/checkm-genome-1.0.16.tar.gz#sha256=df6ab9d048326030342c498f22641d864d274b2daab1ef766d2efd1f4fc7f501 (from https://pypi.org/simple/checkm-genome/), version: 1.0.16
2020-09-20T06:41:47,487   Found link https://files.pythonhosted.org/packages/9d/16/4bc442eeae8f320730360d75fc1f8a83ced15181efdd36611184293da840/checkm-genome-1.0.17.tar.gz#sha256=b322e0f1a88dd27df3eba3ac9619aec5c5c498c4539cb02a700d353ade96dfe3 (from https://pypi.org/simple/checkm-genome/), version: 1.0.17
2020-09-20T06:41:47,488   Found link https://files.pythonhosted.org/packages/51/f0/aa0f9b3a60b2dd10a8aaf7ece78b75095a7898269489278c2f0284f1fe94/checkm-genome-1.0.18.tar.gz#sha256=0dcf31eab5e340a0fff37d7a5091d46d9269b0708db8f789adcd7cbd2a09a2b7 (from https://pypi.org/simple/checkm-genome/), version: 1.0.18
2020-09-20T06:41:47,488   Found link https://files.pythonhosted.org/packages/07/29/f33ce1fdb2734cd9f44bb49b59a7b527794fad6e5cf3814c1d32eb41dcc1/checkm-genome-1.1.0.tar.gz#sha256=b1e6ac76fb94b68f601ab3c76fbdc2a506ca413e3c7232b347404408e4fe18d0 (from https://pypi.org/simple/checkm-genome/), version: 1.1.0
2020-09-20T06:41:47,488   Found link https://files.pythonhosted.org/packages/bd/60/1d695678bf00a952059946db6d1aaf753fee5f3c030cb97557e4f4b8d87c/checkm-genome-1.1.1.tar.gz#sha256=d0da6ff88bc74d6c1048eaddc594e35d582e83793de8ddf7ab7529ea4869224c (from https://pypi.org/simple/checkm-genome/), version: 1.1.1
2020-09-20T06:41:47,489   Found link https://files.pythonhosted.org/packages/3d/7d/4fdd6f38fb2af3c58e0e5feb6ec0b5c86d9571f0b2f3466e176d8829923d/checkm-genome-1.1.2.tar.gz#sha256=309c5bc4f4a895acf23c0e94fa856328d915da0d5f3aee84e5942a6ee1cc4db2 (from https://pypi.org/simple/checkm-genome/), version: 1.1.2
2020-09-20T06:41:47,489   Found link https://files.pythonhosted.org/packages/42/91/ad3bc30ca4fd15b831b7e637d59c7fbae6279077e5a4f563dca2713be2db/checkm-genome-1.1.3.tar.gz#sha256=7fda369783d3b7d6a7324ee33cc93ac3560fba509bf2139e920fa661e2b45644 (from https://pypi.org/simple/checkm-genome/), version: 1.1.3
2020-09-20T06:41:47,497 Given no hashes to check 1 links for project 'checkm-genome': discarding no candidates
2020-09-20T06:41:47,498 Using version 0.9.4 (newest of versions: 0.9.4)
2020-09-20T06:41:47,502 Collecting checkm-genome==0.9.4
2020-09-20T06:41:47,503   Created temporary directory: /tmp/pip-unpack-sqot_4hz
2020-09-20T06:41:47,542   Downloading checkm-genome-0.9.4.tar.gz (113 kB)
2020-09-20T06:41:47,732   Added checkm-genome==0.9.4 from https://files.pythonhosted.org/packages/ae/51/c5173a5940663f1a25311584f322ccfd22148097eea896f3fe96071292a6/checkm-genome-0.9.4.tar.gz#sha256=60a1f602de2c50143d4a94f5e292963ff30e670f9651dda1253872d05e36d207 to build tracker '/tmp/pip-req-tracker-h6ybs0ht'
2020-09-20T06:41:47,733     Running setup.py (path:/tmp/pip-wheel-fyjqwoql/checkm-genome/setup.py) egg_info for package checkm-genome
2020-09-20T06:41:47,734     Created temporary directory: /tmp/pip-pip-egg-info-4y7sog7c
2020-09-20T06:41:47,734     Running command python setup.py egg_info
2020-09-20T06:41:48,708     running egg_info
2020-09-20T06:41:48,710     creating /tmp/pip-pip-egg-info-4y7sog7c/checkm_genome.egg-info
2020-09-20T06:41:48,711     writing /tmp/pip-pip-egg-info-4y7sog7c/checkm_genome.egg-info/PKG-INFO
2020-09-20T06:41:48,713     writing dependency_links to /tmp/pip-pip-egg-info-4y7sog7c/checkm_genome.egg-info/dependency_links.txt
2020-09-20T06:41:48,715     writing requirements to /tmp/pip-pip-egg-info-4y7sog7c/checkm_genome.egg-info/requires.txt
2020-09-20T06:41:48,716     writing top-level names to /tmp/pip-pip-egg-info-4y7sog7c/checkm_genome.egg-info/top_level.txt
2020-09-20T06:41:48,718     writing manifest file '/tmp/pip-pip-egg-info-4y7sog7c/checkm_genome.egg-info/SOURCES.txt'
2020-09-20T06:41:48,864     reading manifest file '/tmp/pip-pip-egg-info-4y7sog7c/checkm_genome.egg-info/SOURCES.txt'
2020-09-20T06:41:48,869     writing manifest file '/tmp/pip-pip-egg-info-4y7sog7c/checkm_genome.egg-info/SOURCES.txt'
2020-09-20T06:41:48,949   Source in /tmp/pip-wheel-fyjqwoql/checkm-genome has version 0.9.4, which satisfies requirement checkm-genome==0.9.4 from https://files.pythonhosted.org/packages/ae/51/c5173a5940663f1a25311584f322ccfd22148097eea896f3fe96071292a6/checkm-genome-0.9.4.tar.gz#sha256=60a1f602de2c50143d4a94f5e292963ff30e670f9651dda1253872d05e36d207
2020-09-20T06:41:48,951   Removed checkm-genome==0.9.4 from https://files.pythonhosted.org/packages/ae/51/c5173a5940663f1a25311584f322ccfd22148097eea896f3fe96071292a6/checkm-genome-0.9.4.tar.gz#sha256=60a1f602de2c50143d4a94f5e292963ff30e670f9651dda1253872d05e36d207 from build tracker '/tmp/pip-req-tracker-h6ybs0ht'
2020-09-20T06:41:48,954 Building wheels for collected packages: checkm-genome
2020-09-20T06:41:48,962   Created temporary directory: /tmp/pip-wheel-qkflc4yw
2020-09-20T06:41:48,963   Building wheel for checkm-genome (setup.py): started
2020-09-20T06:41:48,963   Destination directory: /tmp/pip-wheel-qkflc4yw
2020-09-20T06:41:48,964   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-fyjqwoql/checkm-genome/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-fyjqwoql/checkm-genome/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-qkflc4yw
2020-09-20T06:41:49,918   running bdist_wheel
2020-09-20T06:41:49,924   running build
2020-09-20T06:41:49,924   running build_py
2020-09-20T06:41:50,085   creating build
2020-09-20T06:41:50,086   creating build/lib
2020-09-20T06:41:50,087   creating build/lib/checkm
2020-09-20T06:41:50,088   copying checkm/profile.py -> build/lib/checkm
2020-09-20T06:41:50,090   copying checkm/__init__.py -> build/lib/checkm
2020-09-20T06:41:50,092   copying checkm/main.py -> build/lib/checkm
2020-09-20T06:41:50,095   copying checkm/binComparer.py -> build/lib/checkm
2020-09-20T06:41:50,097   copying checkm/markerGeneFinder.py -> build/lib/checkm
2020-09-20T06:41:50,099   copying checkm/markerSets.py -> build/lib/checkm
2020-09-20T06:41:50,102   copying checkm/defaultValues.py -> build/lib/checkm
2020-09-20T06:41:50,103   copying checkm/timeKeeper.py -> build/lib/checkm
2020-09-20T06:41:50,105   copying checkm/merger.py -> build/lib/checkm
2020-09-20T06:41:50,108   copying checkm/hmmerModelParser.py -> build/lib/checkm
2020-09-20T06:41:50,111   copying checkm/prodigal.py -> build/lib/checkm
2020-09-20T06:41:50,113   copying checkm/treeParser.py -> build/lib/checkm
2020-09-20T06:41:50,117   copying checkm/taxonParser.py -> build/lib/checkm
2020-09-20T06:41:50,119   copying checkm/coverage.py -> build/lib/checkm
2020-09-20T06:41:50,122   copying checkm/binStatistics.py -> build/lib/checkm
2020-09-20T06:41:50,124   copying checkm/pplacer.py -> build/lib/checkm
2020-09-20T06:41:50,127   copying checkm/ssuFinder.py -> build/lib/checkm
2020-09-20T06:41:50,129   copying checkm/unbinned.py -> build/lib/checkm
2020-09-20T06:41:50,132   copying checkm/uniqueMarkers.py -> build/lib/checkm
2020-09-20T06:41:50,134   copying checkm/coverageWindows.py -> build/lib/checkm
2020-09-20T06:41:50,137   copying checkm/resultsParser.py -> build/lib/checkm
2020-09-20T06:41:50,140   copying checkm/prettytable.py -> build/lib/checkm
2020-09-20T06:41:50,144   copying checkm/genomicSignatures.py -> build/lib/checkm
2020-09-20T06:41:50,147   copying checkm/checkmData.py -> build/lib/checkm
2020-09-20T06:41:50,150   copying checkm/binTools.py -> build/lib/checkm
2020-09-20T06:41:50,153   copying checkm/common.py -> build/lib/checkm
2020-09-20T06:41:50,157   copying checkm/hmmerAligner.py -> build/lib/checkm
2020-09-20T06:41:50,161   copying checkm/PCA.py -> build/lib/checkm
2020-09-20T06:41:50,164   copying checkm/hmmer.py -> build/lib/checkm
2020-09-20T06:41:50,167   copying checkm/aminoAcidIdentity.py -> build/lib/checkm
2020-09-20T06:41:50,172   creating build/lib/checkm/plot
2020-09-20T06:41:50,173   copying checkm/plot/tetraDistPlots.py -> build/lib/checkm/plot
2020-09-20T06:41:50,176   copying checkm/plot/__init__.py -> build/lib/checkm/plot
2020-09-20T06:41:50,178   copying checkm/plot/nxPlot.py -> build/lib/checkm/plot
2020-09-20T06:41:50,180   copying checkm/plot/cumulativeLengthPlot.py -> build/lib/checkm/plot
2020-09-20T06:41:50,183   copying checkm/plot/lengthHistogram.py -> build/lib/checkm/plot
2020-09-20T06:41:50,185   copying checkm/plot/binQAPlot.py -> build/lib/checkm/plot
2020-09-20T06:41:50,188   copying checkm/plot/distributionPlots.py -> build/lib/checkm/plot
2020-09-20T06:41:50,190   copying checkm/plot/parallelCoordPlot.py -> build/lib/checkm/plot
2020-09-20T06:41:50,193   copying checkm/plot/AbstractPlot.py -> build/lib/checkm/plot
2020-09-20T06:41:50,195   copying checkm/plot/markerGenePosPlot.py -> build/lib/checkm/plot
2020-09-20T06:41:50,198   copying checkm/plot/codingDensityPlots.py -> build/lib/checkm/plot
2020-09-20T06:41:50,201   copying checkm/plot/gcPlots.py -> build/lib/checkm/plot
2020-09-20T06:41:50,203   copying checkm/plot/pcaPlot.py -> build/lib/checkm/plot
2020-09-20T06:41:50,206   copying checkm/plot/gcBiasPlots.py -> build/lib/checkm/plot
2020-09-20T06:41:50,209   creating build/lib/checkm/test
2020-09-20T06:41:50,210   copying checkm/test/__init__.py -> build/lib/checkm/test
2020-09-20T06:41:50,212   copying checkm/test/test_binStatistics.py -> build/lib/checkm/test
2020-09-20T06:41:50,214   copying checkm/test/test_markerSets.py -> build/lib/checkm/test
2020-09-20T06:41:50,217   copying checkm/test/test_ecoli.py -> build/lib/checkm/test
2020-09-20T06:41:50,220   copying checkm/test/test_aminoAcidIdentity.py -> build/lib/checkm/test
2020-09-20T06:41:50,222   copying checkm/test/test_taxonomyUtils.py -> build/lib/checkm/test
2020-09-20T06:41:50,224   copying checkm/test/test_seqUtils.py -> build/lib/checkm/test
2020-09-20T06:41:50,227   copying checkm/test/test_genomicSignatures.py -> build/lib/checkm/test
2020-09-20T06:41:50,230   creating build/lib/checkm/util
2020-09-20T06:41:50,230   copying checkm/util/__init__.py -> build/lib/checkm/util
2020-09-20T06:41:50,232   copying checkm/util/img.py -> build/lib/checkm/util
2020-09-20T06:41:50,234   copying checkm/util/seqUtils.py -> build/lib/checkm/util
2020-09-20T06:41:50,236   copying checkm/util/pfam.py -> build/lib/checkm/util
2020-09-20T06:41:50,239   copying checkm/util/taxonomyUtils.py -> build/lib/checkm/util
2020-09-20T06:41:50,241   copying checkm/DATA_CONFIG -> build/lib/checkm
2020-09-20T06:41:50,247   running build_scripts
2020-09-20T06:41:50,247   creating build/scripts-3.7
2020-09-20T06:41:50,248   copying and adjusting bin/checkm -> build/scripts-3.7
2020-09-20T06:41:50,252   changing mode of build/scripts-3.7/checkm from 644 to 755
2020-09-20T06:41:50,255   installing to build/bdist.linux-armv7l/wheel
2020-09-20T06:41:50,255   running install
2020-09-20T06:41:50,256   running install_lib
2020-09-20T06:41:50,260   creating build/bdist.linux-armv7l
2020-09-20T06:41:50,260   creating build/bdist.linux-armv7l/wheel
2020-09-20T06:41:50,263   creating build/bdist.linux-armv7l/wheel/checkm
2020-09-20T06:41:50,264   copying build/lib/checkm/profile.py -> build/bdist.linux-armv7l/wheel/checkm
2020-09-20T06:41:50,266   copying build/lib/checkm/__init__.py -> build/bdist.linux-armv7l/wheel/checkm
2020-09-20T06:41:50,268   copying build/lib/checkm/main.py -> build/bdist.linux-armv7l/wheel/checkm
2020-09-20T06:41:50,271   copying build/lib/checkm/binComparer.py -> build/bdist.linux-armv7l/wheel/checkm
2020-09-20T06:41:50,274   copying build/lib/checkm/markerGeneFinder.py -> build/bdist.linux-armv7l/wheel/checkm
2020-09-20T06:41:50,276   copying build/lib/checkm/markerSets.py -> build/bdist.linux-armv7l/wheel/checkm
2020-09-20T06:41:50,279   copying build/lib/checkm/defaultValues.py -> build/bdist.linux-armv7l/wheel/checkm
2020-09-20T06:41:50,281   copying build/lib/checkm/timeKeeper.py -> build/bdist.linux-armv7l/wheel/checkm
2020-09-20T06:41:50,283   copying build/lib/checkm/merger.py -> build/bdist.linux-armv7l/wheel/checkm
2020-09-20T06:41:50,285   copying build/lib/checkm/hmmerModelParser.py -> build/bdist.linux-armv7l/wheel/checkm
2020-09-20T06:41:50,288   creating build/bdist.linux-armv7l/wheel/checkm/plot
2020-09-20T06:41:50,289   copying build/lib/checkm/plot/tetraDistPlots.py -> build/bdist.linux-armv7l/wheel/checkm/plot
2020-09-20T06:41:50,292   copying build/lib/checkm/plot/__init__.py -> build/bdist.linux-armv7l/wheel/checkm/plot
2020-09-20T06:41:50,294   copying build/lib/checkm/plot/nxPlot.py -> build/bdist.linux-armv7l/wheel/checkm/plot
2020-09-20T06:41:50,297   copying build/lib/checkm/plot/cumulativeLengthPlot.py -> build/bdist.linux-armv7l/wheel/checkm/plot
2020-09-20T06:41:50,299   copying build/lib/checkm/plot/lengthHistogram.py -> build/bdist.linux-armv7l/wheel/checkm/plot
2020-09-20T06:41:50,302   copying build/lib/checkm/plot/binQAPlot.py -> build/bdist.linux-armv7l/wheel/checkm/plot
2020-09-20T06:41:50,305   copying build/lib/checkm/plot/distributionPlots.py -> build/bdist.linux-armv7l/wheel/checkm/plot
2020-09-20T06:41:50,307   copying build/lib/checkm/plot/parallelCoordPlot.py -> build/bdist.linux-armv7l/wheel/checkm/plot
2020-09-20T06:41:50,310   copying build/lib/checkm/plot/AbstractPlot.py -> build/bdist.linux-armv7l/wheel/checkm/plot
2020-09-20T06:41:50,312   copying build/lib/checkm/plot/markerGenePosPlot.py -> build/bdist.linux-armv7l/wheel/checkm/plot
2020-09-20T06:41:50,315   copying build/lib/checkm/plot/codingDensityPlots.py -> build/bdist.linux-armv7l/wheel/checkm/plot
2020-09-20T06:41:50,318   copying build/lib/checkm/plot/gcPlots.py -> build/bdist.linux-armv7l/wheel/checkm/plot
2020-09-20T06:41:50,321   copying build/lib/checkm/plot/pcaPlot.py -> build/bdist.linux-armv7l/wheel/checkm/plot
2020-09-20T06:41:50,323   copying build/lib/checkm/plot/gcBiasPlots.py -> build/bdist.linux-armv7l/wheel/checkm/plot
2020-09-20T06:41:50,326   copying build/lib/checkm/DATA_CONFIG -> build/bdist.linux-armv7l/wheel/checkm
2020-09-20T06:41:50,329   creating build/bdist.linux-armv7l/wheel/checkm/test
2020-09-20T06:41:50,330   copying build/lib/checkm/test/__init__.py -> build/bdist.linux-armv7l/wheel/checkm/test
2020-09-20T06:41:50,332   copying build/lib/checkm/test/test_binStatistics.py -> build/bdist.linux-armv7l/wheel/checkm/test
2020-09-20T06:41:50,335   copying build/lib/checkm/test/test_markerSets.py -> build/bdist.linux-armv7l/wheel/checkm/test
2020-09-20T06:41:50,337   copying build/lib/checkm/test/test_ecoli.py -> build/bdist.linux-armv7l/wheel/checkm/test
2020-09-20T06:41:50,340   copying build/lib/checkm/test/test_aminoAcidIdentity.py -> build/bdist.linux-armv7l/wheel/checkm/test
2020-09-20T06:41:50,343   copying build/lib/checkm/test/test_taxonomyUtils.py -> build/bdist.linux-armv7l/wheel/checkm/test
2020-09-20T06:41:50,345   copying build/lib/checkm/test/test_seqUtils.py -> build/bdist.linux-armv7l/wheel/checkm/test
2020-09-20T06:41:50,348   copying build/lib/checkm/test/test_genomicSignatures.py -> build/bdist.linux-armv7l/wheel/checkm/test
2020-09-20T06:41:50,350   copying build/lib/checkm/prodigal.py -> build/bdist.linux-armv7l/wheel/checkm
2020-09-20T06:41:50,352   copying build/lib/checkm/treeParser.py -> build/bdist.linux-armv7l/wheel/checkm
2020-09-20T06:41:50,357   copying build/lib/checkm/taxonParser.py -> build/bdist.linux-armv7l/wheel/checkm
2020-09-20T06:41:50,359   copying build/lib/checkm/coverage.py -> build/bdist.linux-armv7l/wheel/checkm
2020-09-20T06:41:50,362   copying build/lib/checkm/binStatistics.py -> build/bdist.linux-armv7l/wheel/checkm
2020-09-20T06:41:50,365   copying build/lib/checkm/pplacer.py -> build/bdist.linux-armv7l/wheel/checkm
2020-09-20T06:41:50,368   copying build/lib/checkm/ssuFinder.py -> build/bdist.linux-armv7l/wheel/checkm
2020-09-20T06:41:50,371   copying build/lib/checkm/unbinned.py -> build/bdist.linux-armv7l/wheel/checkm
2020-09-20T06:41:50,373   copying build/lib/checkm/uniqueMarkers.py -> build/bdist.linux-armv7l/wheel/checkm
2020-09-20T06:41:50,375   copying build/lib/checkm/coverageWindows.py -> build/bdist.linux-armv7l/wheel/checkm
2020-09-20T06:41:50,377   copying build/lib/checkm/resultsParser.py -> build/bdist.linux-armv7l/wheel/checkm
2020-09-20T06:41:50,381   copying build/lib/checkm/prettytable.py -> build/bdist.linux-armv7l/wheel/checkm
2020-09-20T06:41:50,385   copying build/lib/checkm/genomicSignatures.py -> build/bdist.linux-armv7l/wheel/checkm
2020-09-20T06:41:50,387   copying build/lib/checkm/checkmData.py -> build/bdist.linux-armv7l/wheel/checkm
2020-09-20T06:41:50,389   copying build/lib/checkm/binTools.py -> build/bdist.linux-armv7l/wheel/checkm
2020-09-20T06:41:50,391   copying build/lib/checkm/common.py -> build/bdist.linux-armv7l/wheel/checkm
2020-09-20T06:41:50,393   copying build/lib/checkm/hmmerAligner.py -> build/bdist.linux-armv7l/wheel/checkm
2020-09-20T06:41:50,397   creating build/bdist.linux-armv7l/wheel/checkm/util
2020-09-20T06:41:50,397   copying build/lib/checkm/util/__init__.py -> build/bdist.linux-armv7l/wheel/checkm/util
2020-09-20T06:41:50,399   copying build/lib/checkm/util/img.py -> build/bdist.linux-armv7l/wheel/checkm/util
2020-09-20T06:41:50,402   copying build/lib/checkm/util/seqUtils.py -> build/bdist.linux-armv7l/wheel/checkm/util
2020-09-20T06:41:50,404   copying build/lib/checkm/util/pfam.py -> build/bdist.linux-armv7l/wheel/checkm/util
2020-09-20T06:41:50,406   copying build/lib/checkm/util/taxonomyUtils.py -> build/bdist.linux-armv7l/wheel/checkm/util
2020-09-20T06:41:50,408   copying build/lib/checkm/PCA.py -> build/bdist.linux-armv7l/wheel/checkm
2020-09-20T06:41:50,410   copying build/lib/checkm/hmmer.py -> build/bdist.linux-armv7l/wheel/checkm
2020-09-20T06:41:50,412   copying build/lib/checkm/aminoAcidIdentity.py -> build/bdist.linux-armv7l/wheel/checkm
2020-09-20T06:41:50,414   running install_egg_info
2020-09-20T06:41:50,438   running egg_info
2020-09-20T06:41:50,439   creating checkm_genome.egg-info
2020-09-20T06:41:50,440   writing checkm_genome.egg-info/PKG-INFO
2020-09-20T06:41:50,442   writing dependency_links to checkm_genome.egg-info/dependency_links.txt
2020-09-20T06:41:50,444   writing requirements to checkm_genome.egg-info/requires.txt
2020-09-20T06:41:50,445   writing top-level names to checkm_genome.egg-info/top_level.txt
2020-09-20T06:41:50,447   writing manifest file 'checkm_genome.egg-info/SOURCES.txt'
2020-09-20T06:41:50,454   reading manifest file 'checkm_genome.egg-info/SOURCES.txt'
2020-09-20T06:41:50,459   writing manifest file 'checkm_genome.egg-info/SOURCES.txt'
2020-09-20T06:41:50,461   Copying checkm_genome.egg-info to build/bdist.linux-armv7l/wheel/checkm_genome-0.9.4-py3.7.egg-info
2020-09-20T06:41:50,473   running install_scripts
2020-09-20T06:41:50,527   creating build/bdist.linux-armv7l/wheel/checkm_genome-0.9.4.data
2020-09-20T06:41:50,527   creating build/bdist.linux-armv7l/wheel/checkm_genome-0.9.4.data/scripts
2020-09-20T06:41:50,528   copying build/scripts-3.7/checkm -> build/bdist.linux-armv7l/wheel/checkm_genome-0.9.4.data/scripts
2020-09-20T06:41:50,532   changing mode of build/bdist.linux-armv7l/wheel/checkm_genome-0.9.4.data/scripts/checkm to 755
2020-09-20T06:41:50,556   adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
2020-09-20T06:41:50,563   creating build/bdist.linux-armv7l/wheel/checkm_genome-0.9.4.dist-info/WHEEL
2020-09-20T06:41:50,566   creating '/tmp/pip-wheel-qkflc4yw/checkm_genome-0.9.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-09-20T06:41:50,569   adding 'checkm/DATA_CONFIG'
2020-09-20T06:41:50,571   adding 'checkm/PCA.py'
2020-09-20T06:41:50,572   adding 'checkm/__init__.py'
2020-09-20T06:41:50,573   adding 'checkm/aminoAcidIdentity.py'
2020-09-20T06:41:50,575   adding 'checkm/binComparer.py'
2020-09-20T06:41:50,577   adding 'checkm/binStatistics.py'
2020-09-20T06:41:50,579   adding 'checkm/binTools.py'
2020-09-20T06:41:50,582   adding 'checkm/checkmData.py'
2020-09-20T06:41:50,584   adding 'checkm/common.py'
2020-09-20T06:41:50,587   adding 'checkm/coverage.py'
2020-09-20T06:41:50,589   adding 'checkm/coverageWindows.py'
2020-09-20T06:41:50,591   adding 'checkm/defaultValues.py'
2020-09-20T06:41:50,593   adding 'checkm/genomicSignatures.py'
2020-09-20T06:41:50,595   adding 'checkm/hmmer.py'
2020-09-20T06:41:50,599   adding 'checkm/hmmerAligner.py'
2020-09-20T06:41:50,601   adding 'checkm/hmmerModelParser.py'
2020-09-20T06:41:50,605   adding 'checkm/main.py'
2020-09-20T06:41:50,607   adding 'checkm/markerGeneFinder.py'
2020-09-20T06:41:50,609   adding 'checkm/markerSets.py'
2020-09-20T06:41:50,611   adding 'checkm/merger.py'
2020-09-20T06:41:50,612   adding 'checkm/pplacer.py'
2020-09-20T06:41:50,618   adding 'checkm/prettytable.py'
2020-09-20T06:41:50,620   adding 'checkm/prodigal.py'
2020-09-20T06:41:50,622   adding 'checkm/profile.py'
2020-09-20T06:41:50,625   adding 'checkm/resultsParser.py'
2020-09-20T06:41:50,628   adding 'checkm/ssuFinder.py'
2020-09-20T06:41:50,629   adding 'checkm/taxonParser.py'
2020-09-20T06:41:50,630   adding 'checkm/timeKeeper.py'
2020-09-20T06:41:50,634   adding 'checkm/treeParser.py'
2020-09-20T06:41:50,635   adding 'checkm/unbinned.py'
2020-09-20T06:41:50,637   adding 'checkm/uniqueMarkers.py'
2020-09-20T06:41:50,639   adding 'checkm/plot/AbstractPlot.py'
2020-09-20T06:41:50,640   adding 'checkm/plot/__init__.py'
2020-09-20T06:41:50,642   adding 'checkm/plot/binQAPlot.py'
2020-09-20T06:41:50,643   adding 'checkm/plot/codingDensityPlots.py'
2020-09-20T06:41:50,645   adding 'checkm/plot/cumulativeLengthPlot.py'
2020-09-20T06:41:50,646   adding 'checkm/plot/distributionPlots.py'
2020-09-20T06:41:50,648   adding 'checkm/plot/gcBiasPlots.py'
2020-09-20T06:41:50,649   adding 'checkm/plot/gcPlots.py'
2020-09-20T06:41:50,651   adding 'checkm/plot/lengthHistogram.py'
2020-09-20T06:41:50,652   adding 'checkm/plot/markerGenePosPlot.py'
2020-09-20T06:41:50,654   adding 'checkm/plot/nxPlot.py'
2020-09-20T06:41:50,655   adding 'checkm/plot/parallelCoordPlot.py'
2020-09-20T06:41:50,657   adding 'checkm/plot/pcaPlot.py'
2020-09-20T06:41:50,658   adding 'checkm/plot/tetraDistPlots.py'
2020-09-20T06:41:50,660   adding 'checkm/test/__init__.py'
2020-09-20T06:41:50,661   adding 'checkm/test/test_aminoAcidIdentity.py'
2020-09-20T06:41:50,663   adding 'checkm/test/test_binStatistics.py'
2020-09-20T06:41:50,664   adding 'checkm/test/test_ecoli.py'
2020-09-20T06:41:50,666   adding 'checkm/test/test_genomicSignatures.py'
2020-09-20T06:41:50,667   adding 'checkm/test/test_markerSets.py'
2020-09-20T06:41:50,669   adding 'checkm/test/test_seqUtils.py'
2020-09-20T06:41:50,670   adding 'checkm/test/test_taxonomyUtils.py'
2020-09-20T06:41:50,671   adding 'checkm/util/__init__.py'
2020-09-20T06:41:50,674   adding 'checkm/util/img.py'
2020-09-20T06:41:50,676   adding 'checkm/util/pfam.py'
2020-09-20T06:41:50,677   adding 'checkm/util/seqUtils.py'
2020-09-20T06:41:50,679   adding 'checkm/util/taxonomyUtils.py'
2020-09-20T06:41:50,684   adding 'checkm_genome-0.9.4.data/scripts/checkm'
2020-09-20T06:41:50,691   adding 'checkm_genome-0.9.4.dist-info/LICENSE.txt'
2020-09-20T06:41:50,693   adding 'checkm_genome-0.9.4.dist-info/METADATA'
2020-09-20T06:41:50,693   adding 'checkm_genome-0.9.4.dist-info/WHEEL'
2020-09-20T06:41:50,694   adding 'checkm_genome-0.9.4.dist-info/top_level.txt'
2020-09-20T06:41:50,695   adding 'checkm_genome-0.9.4.dist-info/RECORD'
2020-09-20T06:41:50,701   removing build/bdist.linux-armv7l/wheel
2020-09-20T06:41:50,793   Building wheel for checkm-genome (setup.py): finished with status 'done'
2020-09-20T06:41:50,797   Created wheel for checkm-genome: filename=checkm_genome-0.9.4-py3-none-any.whl size=157186 sha256=3756f82037a7836255e1f78b5acdfffdcccde5e0e41493bbfdd85f90e0b6a84e
2020-09-20T06:41:50,797   Stored in directory: /tmp/pip-ephem-wheel-cache-55b5r4ve/wheels/fc/b7/35/b6097305b18115efb8848dda38a7545ede3d2c0a04de0dc29d
2020-09-20T06:41:50,799 Successfully built checkm-genome
2020-09-20T06:41:50,809 Removed build tracker: '/tmp/pip-req-tracker-h6ybs0ht'