2020-09-20T07:12:31,557 Created temporary directory: /tmp/pip-ephem-wheel-cache-6vju0_ca
2020-09-20T07:12:31,559 Created temporary directory: /tmp/pip-req-tracker-1g9a1hsx
2020-09-20T07:12:31,560 Initialized build tracking at /tmp/pip-req-tracker-1g9a1hsx
2020-09-20T07:12:31,560 Created build tracker: /tmp/pip-req-tracker-1g9a1hsx
2020-09-20T07:12:31,560 Entered build tracker: /tmp/pip-req-tracker-1g9a1hsx
2020-09-20T07:12:31,561 Created temporary directory: /tmp/pip-wheel-4k44y7g2
2020-09-20T07:12:31,570 1 location(s) to search for versions of biom-format:
2020-09-20T07:12:31,570 * https://pypi.org/simple/biom-format/
2020-09-20T07:12:31,570 Fetching project page and analyzing links: https://pypi.org/simple/biom-format/
2020-09-20T07:12:31,571 Getting page https://pypi.org/simple/biom-format/
2020-09-20T07:12:31,572 Found index url https://pypi.org/simple
2020-09-20T07:12:31,667   Found link https://files.pythonhosted.org/packages/e8/a0/0b4947cd716f8923410be46d0473442e906e80fd605d1f900667224878a9/biom-format-1.2.0-dev.tar.gz#sha256=4ffddeb779a2f9d2859c01f2502ea1a40ee88cedc03306871f71eb60a2d55d9c (from https://pypi.org/simple/biom-format/), version: 1.2.0-dev
2020-09-20T07:12:31,667   Found link https://files.pythonhosted.org/packages/5d/a6/50855b83db9932d78ff10721d90f79725729040db8117ce2c5a1e50c3a75/biom-format-1.3.0.tar.gz#sha256=f8cfb8e6591480f18acd5cea60e234885a885502941d82457c7bde323f4f4c5e (from https://pypi.org/simple/biom-format/), version: 1.3.0
2020-09-20T07:12:31,667   Found link https://files.pythonhosted.org/packages/98/3b/4e80a9a5c4a3c6764aa8c0c994973e7df71eee02fc6b8cc6e1d06a64ab7e/biom-format-1.3.1.tar.gz#sha256=03e750728dc2625997aa62043adaf03643801ef34c1764213303e926766f4cef (from https://pypi.org/simple/biom-format/), version: 1.3.1
2020-09-20T07:12:31,668   Found link https://files.pythonhosted.org/packages/ab/62/b44f747c549c2cb3408462905461ae8d0975163c927b4ac4452321368815/biom-format-2.0.0.tar.gz#sha256=8267b32aa24e7115cbe354904f6ff2023c73a308f8c897d96cef28e4f8850f9c (from https://pypi.org/simple/biom-format/), version: 2.0.0
2020-09-20T07:12:31,668   Found link https://files.pythonhosted.org/packages/26/14/46ce3a0c94b4e5f03473b029be7df19341c525c92d310443ca1bd935c4c1/biom-format-2.0.1.tar.gz#sha256=e2e8a843e7a85b6f48381e8b24b2e0809b111507efe7e1b86e8a63cb1b60a97c (from https://pypi.org/simple/biom-format/), version: 2.0.1
2020-09-20T07:12:31,668   Found link https://files.pythonhosted.org/packages/bc/8e/c937b6997062dfc70cd6fc6f53b70703dcec400e39af2d43542349f7ace6/biom-format-2.1.tar.gz#sha256=dac3be021598783abeeec92fc4a5abb48d62908a3f68b3ef32e964c38a544bdd (from https://pypi.org/simple/biom-format/), version: 2.1
2020-09-20T07:12:31,669   Found link https://files.pythonhosted.org/packages/40/45/a7a64146c75f00cf9889753d39a0371adf2982ee3f1eb31c28efbb5a3529/biom-format-2.1.1.tar.gz#sha256=9ff3690e60659515b10bcf0a748ee623a2448c332a811050e63ac9ff8e9e6035 (from https://pypi.org/simple/biom-format/), version: 2.1.1
2020-09-20T07:12:31,669   Found link https://files.pythonhosted.org/packages/d9/de/65d8089e4aab975658f80c4975015fb5c761fe4c37868cc317733f33d0cd/biom-format-2.1.2.tar.gz#sha256=a8cd3087036202baf7a8f758f585f80c3fbcd161bf76b0a96c5f734115a4ef99 (from https://pypi.org/simple/biom-format/), version: 2.1.2
2020-09-20T07:12:31,669   Found link https://files.pythonhosted.org/packages/9d/ed/1ff2ee2d16aa3edd66e8f07f11321eb9b9cd478307d87674c633ba9b081a/biom-format-2.1.3.tar.gz#sha256=ce2634f0c8f19561daae2bf4729424ec5222092f41257e1aafe9b7afc8d30909 (from https://pypi.org/simple/biom-format/), version: 2.1.3
2020-09-20T07:12:31,670   Found link https://files.pythonhosted.org/packages/2e/8e/f8575e51764697c485f7e81dfc31ff72d8b2c4b50e88c23094be65814451/biom-format-2.1.4.tar.gz#sha256=36b465394b8765df24b9f0c0707a2ebbf367f88f1ed47d794f011930a1d4ba15 (from https://pypi.org/simple/biom-format/), version: 2.1.4
2020-09-20T07:12:31,670   Found link https://files.pythonhosted.org/packages/e8/74/9b7e50c29ba548cd53eb97fb9cc1f05a2cf53aa179a64f36e93282b84f79/biom-format-2.1.5.tar.gz#sha256=aac0a0c8dfb06cb40e31c52dcfecf43ac7395c8032f2390e49936fce6574e374 (from https://pypi.org/simple/biom-format/), version: 2.1.5
2020-09-20T07:12:31,670   Found link https://files.pythonhosted.org/packages/46/a6/fccc2f5db587d7d896b52054aa5a9f0f7fd8fb6ad23ab9a02934d4cb1739/biom-format-2.1.6.tar.gz#sha256=8eefc275a85cc937f6d6f408d91b7b45eae854cd5d1cbda411a3af51f5b49b0d (from https://pypi.org/simple/biom-format/), version: 2.1.6
2020-09-20T07:12:31,674   Skipping link: none of the wheel's tags match: cp27-cp27m-macosx_10_7_x86_64: https://files.pythonhosted.org/packages/c2/10/ed278d6263ad222b5327f127f07afaadff7dc7ae8482592b9c05500e976d/biom_format-2.1.6-cp27-cp27m-macosx_10_7_x86_64.whl#sha256=83babb4b52c61008b0e09064289e9e022d66ab7b18a76176e81996bd6f14e8e2 (from https://pypi.org/simple/biom-format/)
2020-09-20T07:12:31,674   Found link https://files.pythonhosted.org/packages/25/92/ca4688a006b784bcc1f118c4a53e9aadc78d78abf8ff58ee11d29ac950a4/biom-format-2.1.7.tar.gz#sha256=b47e54282ef13cddffdb00aea9183a87175a2372c91a915259086a3f444c42f4 (from https://pypi.org/simple/biom-format/), version: 2.1.7
2020-09-20T07:12:31,675   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_7_x86_64: https://files.pythonhosted.org/packages/d1/84/0521b9203bb525c2d6a06905be950f29ca98e60a12dca71dfd18bffe7d92/biom_format-2.1.7-cp36-cp36m-macosx_10_7_x86_64.whl#sha256=3f0dc659893037280529f2b9d444cdc4439e2a280e6acfeb3ebc4080aedf63ef (from https://pypi.org/simple/biom-format/)
2020-09-20T07:12:31,675   Found link https://files.pythonhosted.org/packages/c1/c6/3b4284680b390a6c0a39de2fddddfe19a28d1bdceb5951713c483c147f44/biom-format-2.1.8-1.tar.gz#sha256=3711de5807e5b29d944cd2713a16f26b6148eefd5b831ccad6a10c06cbd42649 (from https://pypi.org/simple/biom-format/), version: 2.1.8-1
2020-09-20T07:12:31,678 Given no hashes to check 1 links for project 'biom-format': discarding no candidates
2020-09-20T07:12:31,678 Using version 2.1.1 (newest of versions: 2.1.1)
2020-09-20T07:12:31,682 Collecting biom-format==2.1.1
2020-09-20T07:12:31,683   Created temporary directory: /tmp/pip-unpack-1sg6bw1j
2020-09-20T07:12:31,723   Downloading biom-format-2.1.1.tar.gz (966 kB)
2020-09-20T07:12:33,166   Added biom-format==2.1.1 from https://files.pythonhosted.org/packages/40/45/a7a64146c75f00cf9889753d39a0371adf2982ee3f1eb31c28efbb5a3529/biom-format-2.1.1.tar.gz#sha256=9ff3690e60659515b10bcf0a748ee623a2448c332a811050e63ac9ff8e9e6035 to build tracker '/tmp/pip-req-tracker-1g9a1hsx'
2020-09-20T07:12:33,167     Running setup.py (path:/tmp/pip-wheel-4k44y7g2/biom-format/setup.py) egg_info for package biom-format
2020-09-20T07:12:33,168     Created temporary directory: /tmp/pip-pip-egg-info-ppmeytoz
2020-09-20T07:12:33,168     Running command python setup.py egg_info
2020-09-20T07:12:34,648     running egg_info
2020-09-20T07:12:34,650     creating /tmp/pip-pip-egg-info-ppmeytoz/biom_format.egg-info
2020-09-20T07:12:34,651     writing /tmp/pip-pip-egg-info-ppmeytoz/biom_format.egg-info/PKG-INFO
2020-09-20T07:12:34,653     writing dependency_links to /tmp/pip-pip-egg-info-ppmeytoz/biom_format.egg-info/dependency_links.txt
2020-09-20T07:12:34,655     writing requirements to /tmp/pip-pip-egg-info-ppmeytoz/biom_format.egg-info/requires.txt
2020-09-20T07:12:34,656     writing top-level names to /tmp/pip-pip-egg-info-ppmeytoz/biom_format.egg-info/top_level.txt
2020-09-20T07:12:34,657     writing manifest file '/tmp/pip-pip-egg-info-ppmeytoz/biom_format.egg-info/SOURCES.txt'
2020-09-20T07:12:35,007     reading manifest file '/tmp/pip-pip-egg-info-ppmeytoz/biom_format.egg-info/SOURCES.txt'
2020-09-20T07:12:35,009     reading manifest template 'MANIFEST.in'
2020-09-20T07:12:35,058     no previously-included directories found matching 'docs/_build'
2020-09-20T07:12:35,060     warning: no previously-included files matching '*.pyc' found anywhere in distribution
2020-09-20T07:12:35,062     warning: no previously-included files matching '*.pyo' found anywhere in distribution
2020-09-20T07:12:35,063     warning: no previously-included files matching '.git' found anywhere in distribution
2020-09-20T07:12:35,082     writing manifest file '/tmp/pip-pip-egg-info-ppmeytoz/biom_format.egg-info/SOURCES.txt'
2020-09-20T07:12:35,183   Source in /tmp/pip-wheel-4k44y7g2/biom-format has version 2.1.1, which satisfies requirement biom-format==2.1.1 from https://files.pythonhosted.org/packages/40/45/a7a64146c75f00cf9889753d39a0371adf2982ee3f1eb31c28efbb5a3529/biom-format-2.1.1.tar.gz#sha256=9ff3690e60659515b10bcf0a748ee623a2448c332a811050e63ac9ff8e9e6035
2020-09-20T07:12:35,184   Removed biom-format==2.1.1 from https://files.pythonhosted.org/packages/40/45/a7a64146c75f00cf9889753d39a0371adf2982ee3f1eb31c28efbb5a3529/biom-format-2.1.1.tar.gz#sha256=9ff3690e60659515b10bcf0a748ee623a2448c332a811050e63ac9ff8e9e6035 from build tracker '/tmp/pip-req-tracker-1g9a1hsx'
2020-09-20T07:12:35,186 Building wheels for collected packages: biom-format
2020-09-20T07:12:35,190   Created temporary directory: /tmp/pip-wheel-3u2ms98_
2020-09-20T07:12:35,191   Building wheel for biom-format (setup.py): started
2020-09-20T07:12:35,191   Destination directory: /tmp/pip-wheel-3u2ms98_
2020-09-20T07:12:35,191   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-4k44y7g2/biom-format/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-4k44y7g2/biom-format/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-3u2ms98_
2020-09-20T07:12:36,331   running bdist_wheel
2020-09-20T07:12:36,337   running build
2020-09-20T07:12:36,337   running build_py
2020-09-20T07:12:36,458   creating build
2020-09-20T07:12:36,458   creating build/lib.linux-armv7l-3.7
2020-09-20T07:12:36,459   creating build/lib.linux-armv7l-3.7/biom
2020-09-20T07:12:36,460   copying biom/err.py -> build/lib.linux-armv7l-3.7/biom
2020-09-20T07:12:41,533   copying biom/__init__.py -> build/lib.linux-armv7l-3.7/biom
2020-09-20T07:12:41,536   copying biom/table.py -> build/lib.linux-armv7l-3.7/biom
2020-09-20T07:12:41,547   copying biom/exception.py -> build/lib.linux-armv7l-3.7/biom
2020-09-20T07:12:41,550   copying biom/parse.py -> build/lib.linux-armv7l-3.7/biom
2020-09-20T07:12:41,555   copying biom/util.py -> build/lib.linux-armv7l-3.7/biom
2020-09-20T07:12:41,559   creating build/lib.linux-armv7l-3.7/biom/commands
2020-09-20T07:12:41,560   copying biom/commands/metadata_adder.py -> build/lib.linux-armv7l-3.7/biom/commands
2020-09-20T07:12:41,564   copying biom/commands/table_subsetter.py -> build/lib.linux-armv7l-3.7/biom/commands
2020-09-20T07:12:41,567   copying biom/commands/table_converter.py -> build/lib.linux-armv7l-3.7/biom/commands
2020-09-20T07:12:41,570   copying biom/commands/table_validator.py -> build/lib.linux-armv7l-3.7/biom/commands
2020-09-20T07:12:41,574   copying biom/commands/__init__.py -> build/lib.linux-armv7l-3.7/biom/commands
2020-09-20T07:12:41,576   copying biom/commands/installation_informer.py -> build/lib.linux-armv7l-3.7/biom/commands
2020-09-20T07:12:41,579   copying biom/commands/table_normalizer.py -> build/lib.linux-armv7l-3.7/biom/commands
2020-09-20T07:12:41,581   copying biom/commands/table_summarizer.py -> build/lib.linux-armv7l-3.7/biom/commands
2020-09-20T07:12:41,585   creating build/lib.linux-armv7l-3.7/biom/interfaces
2020-09-20T07:12:41,586   copying biom/interfaces/__init__.py -> build/lib.linux-armv7l-3.7/biom/interfaces
2020-09-20T07:12:41,589   creating build/lib.linux-armv7l-3.7/biom/interfaces/optparse
2020-09-20T07:12:41,590   copying biom/interfaces/optparse/__init__.py -> build/lib.linux-armv7l-3.7/biom/interfaces/optparse
2020-09-20T07:12:41,592   copying biom/interfaces/optparse/output_handler.py -> build/lib.linux-armv7l-3.7/biom/interfaces/optparse
2020-09-20T07:12:41,595   copying biom/interfaces/optparse/input_handler.py -> build/lib.linux-armv7l-3.7/biom/interfaces/optparse
2020-09-20T07:12:41,598   creating build/lib.linux-armv7l-3.7/biom/interfaces/optparse/config
2020-09-20T07:12:41,600   copying biom/interfaces/optparse/config/subset_table.py -> build/lib.linux-armv7l-3.7/biom/interfaces/optparse/config
2020-09-20T07:12:41,602   copying biom/interfaces/optparse/config/__init__.py -> build/lib.linux-armv7l-3.7/biom/interfaces/optparse/config
2020-09-20T07:12:41,604   copying biom/interfaces/optparse/config/summarize_table.py -> build/lib.linux-armv7l-3.7/biom/interfaces/optparse/config
2020-09-20T07:12:41,607   copying biom/interfaces/optparse/config/add_metadata.py -> build/lib.linux-armv7l-3.7/biom/interfaces/optparse/config
2020-09-20T07:12:41,610   copying biom/interfaces/optparse/config/validate_table.py -> build/lib.linux-armv7l-3.7/biom/interfaces/optparse/config
2020-09-20T07:12:41,612   copying biom/interfaces/optparse/config/show_install_info.py -> build/lib.linux-armv7l-3.7/biom/interfaces/optparse/config
2020-09-20T07:12:41,615   copying biom/interfaces/optparse/config/normalize_table.py -> build/lib.linux-armv7l-3.7/biom/interfaces/optparse/config
2020-09-20T07:12:41,617   copying biom/interfaces/optparse/config/convert.py -> build/lib.linux-armv7l-3.7/biom/interfaces/optparse/config
2020-09-20T07:12:41,620   creating build/lib.linux-armv7l-3.7/biom/interfaces/html
2020-09-20T07:12:41,621   copying biom/interfaces/html/__init__.py -> build/lib.linux-armv7l-3.7/biom/interfaces/html
2020-09-20T07:12:41,624   copying biom/interfaces/html/output_handler.py -> build/lib.linux-armv7l-3.7/biom/interfaces/html
2020-09-20T07:12:41,626   copying biom/interfaces/html/input_handler.py -> build/lib.linux-armv7l-3.7/biom/interfaces/html
2020-09-20T07:12:41,629   creating build/lib.linux-armv7l-3.7/biom/interfaces/html/config
2020-09-20T07:12:41,630   copying biom/interfaces/html/config/__init__.py -> build/lib.linux-armv7l-3.7/biom/interfaces/html/config
2020-09-20T07:12:41,633   copying biom/interfaces/html/config/summarize_table.py -> build/lib.linux-armv7l-3.7/biom/interfaces/html/config
2020-09-20T07:12:41,635   copying biom/interfaces/html/config/add_metadata.py -> build/lib.linux-armv7l-3.7/biom/interfaces/html/config
2020-09-20T07:12:41,638   copying biom/interfaces/html/config/validate_table.py -> build/lib.linux-armv7l-3.7/biom/interfaces/html/config
2020-09-20T07:12:41,640   copying biom/interfaces/html/config/show_install_info.py -> build/lib.linux-armv7l-3.7/biom/interfaces/html/config
2020-09-20T07:12:41,643   copying biom/interfaces/html/config/normalize_table.py -> build/lib.linux-armv7l-3.7/biom/interfaces/html/config
2020-09-20T07:12:41,645   copying biom/interfaces/html/config/convert.py -> build/lib.linux-armv7l-3.7/biom/interfaces/html/config
2020-09-20T07:12:41,653   running build_ext
2020-09-20T07:12:41,890   building 'biom._filter' extension
2020-09-20T07:12:41,891   creating build/temp.linux-armv7l-3.7
2020-09-20T07:12:41,891   creating build/temp.linux-armv7l-3.7/biom
2020-09-20T07:12:41,892   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c biom/_filter.c -o build/temp.linux-armv7l-3.7/biom/_filter.o
2020-09-20T07:12:42,258   In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2020-09-20T07:12:42,258                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2020-09-20T07:12:42,258                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2020-09-20T07:12:42,258                    from biom/_filter.c:346:
2020-09-20T07:12:42,258   /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2020-09-20T07:12:42,259    #warning "Using deprecated NumPy API, disable it with " \
2020-09-20T07:12:42,259     ^~~~~~~
2020-09-20T07:12:42,578   In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21,
2020-09-20T07:12:42,578                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2020-09-20T07:12:42,579                    from biom/_filter.c:346:
2020-09-20T07:12:42,579   /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
2020-09-20T07:12:42,579    _import_array(void)
2020-09-20T07:12:42,579    ^~~~~~~~~~~~~
2020-09-20T07:12:47,633   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/biom/_filter.o -o build/lib.linux-armv7l-3.7/biom/_filter.cpython-37m-arm-linux-gnueabihf.so
2020-09-20T07:12:47,774   building 'biom._transform' extension
2020-09-20T07:12:47,774   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c biom/_transform.c -o build/temp.linux-armv7l-3.7/biom/_transform.o
2020-09-20T07:12:48,145   In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2020-09-20T07:12:48,146                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2020-09-20T07:12:48,146                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2020-09-20T07:12:48,146                    from biom/_transform.c:346:
2020-09-20T07:12:48,146   /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2020-09-20T07:12:48,147    #warning "Using deprecated NumPy API, disable it with " \
2020-09-20T07:12:48,147     ^~~~~~~
2020-09-20T07:12:48,364   In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21,
2020-09-20T07:12:48,364                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2020-09-20T07:12:48,364                    from biom/_transform.c:346:
2020-09-20T07:12:48,364   /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
2020-09-20T07:12:48,365    _import_array(void)
2020-09-20T07:12:48,365    ^~~~~~~~~~~~~
2020-09-20T07:12:50,018   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/biom/_transform.o -o build/lib.linux-armv7l-3.7/biom/_transform.cpython-37m-arm-linux-gnueabihf.so
2020-09-20T07:12:50,170   building 'biom._subsample' extension
2020-09-20T07:12:50,171   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c biom/_subsample.c -o build/temp.linux-armv7l-3.7/biom/_subsample.o
2020-09-20T07:12:50,500   In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2020-09-20T07:12:50,500                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2020-09-20T07:12:50,500                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2020-09-20T07:12:50,500                    from biom/_subsample.c:346:
2020-09-20T07:12:50,500   /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2020-09-20T07:12:50,501    #warning "Using deprecated NumPy API, disable it with " \
2020-09-20T07:12:50,501     ^~~~~~~
2020-09-20T07:12:50,735   In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21,
2020-09-20T07:12:50,735                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2020-09-20T07:12:50,736                    from biom/_subsample.c:346:
2020-09-20T07:12:50,736   /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
2020-09-20T07:12:50,736    _import_array(void)
2020-09-20T07:12:50,736    ^~~~~~~~~~~~~
2020-09-20T07:12:54,406   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/biom/_subsample.o -o build/lib.linux-armv7l-3.7/biom/_subsample.cpython-37m-arm-linux-gnueabihf.so
2020-09-20T07:12:54,535   running build_scripts
2020-09-20T07:12:54,535   creating build/scripts-3.7
2020-09-20T07:12:54,537   copying scripts/biom -> build/scripts-3.7
2020-09-20T07:12:54,542   copying scripts/serve-biom -> build/scripts-3.7
2020-09-20T07:12:54,545   Traceback (most recent call last):
2020-09-20T07:12:54,545     File "/usr/lib/python3.7/tokenize.py", line 385, in find_cookie
2020-09-20T07:12:54,546       line_string = line.decode('utf-8')
2020-09-20T07:12:54,546   UnicodeDecodeError: 'utf-8' codec can't decode byte 0x89 in position 0: invalid start byte

2020-09-20T07:12:54,547   During handling of the above exception, another exception occurred:

2020-09-20T07:12:54,548   Traceback (most recent call last):
2020-09-20T07:12:54,548     File "<string>", line 1, in <module>
2020-09-20T07:12:54,548     File "/tmp/pip-wheel-4k44y7g2/biom-format/setup.py", line 110, in <module>
2020-09-20T07:12:54,549       classifiers=classifiers
2020-09-20T07:12:54,549     File "/usr/local/lib/python3.7/dist-packages/setuptools/__init__.py", line 153, in setup
2020-09-20T07:12:54,549       return distutils.core.setup(**attrs)
2020-09-20T07:12:54,549     File "/usr/lib/python3.7/distutils/core.py", line 148, in setup
2020-09-20T07:12:54,550       dist.run_commands()
2020-09-20T07:12:54,550     File "/usr/lib/python3.7/distutils/dist.py", line 966, in run_commands
2020-09-20T07:12:54,550       self.run_command(cmd)
2020-09-20T07:12:54,551     File "/usr/lib/python3.7/distutils/dist.py", line 985, in run_command
2020-09-20T07:12:54,552       cmd_obj.run()
2020-09-20T07:12:54,553     File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 188, in run
2020-09-20T07:12:54,553       self.run_command('build')
2020-09-20T07:12:54,553     File "/usr/lib/python3.7/distutils/cmd.py", line 313, in run_command
2020-09-20T07:12:54,554       self.distribution.run_command(command)
2020-09-20T07:12:54,554     File "/usr/lib/python3.7/distutils/dist.py", line 985, in run_command
2020-09-20T07:12:54,556       cmd_obj.run()
2020-09-20T07:12:54,556     File "/usr/lib/python3.7/distutils/command/build.py", line 135, in run
2020-09-20T07:12:54,556       self.run_command(cmd_name)
2020-09-20T07:12:54,557     File "/usr/lib/python3.7/distutils/cmd.py", line 313, in run_command
2020-09-20T07:12:54,557       self.distribution.run_command(command)
2020-09-20T07:12:54,557     File "/usr/lib/python3.7/distutils/dist.py", line 985, in run_command
2020-09-20T07:12:54,559       cmd_obj.run()
2020-09-20T07:12:54,559     File "/usr/lib/python3.7/distutils/command/build_scripts.py", line 50, in run
2020-09-20T07:12:54,559       self.copy_scripts()
2020-09-20T07:12:54,560     File "/usr/lib/python3.7/distutils/command/build_scripts.py", line 82, in copy_scripts
2020-09-20T07:12:54,560       encoding, lines = tokenize.detect_encoding(f.readline)
2020-09-20T07:12:54,560     File "/usr/lib/python3.7/tokenize.py", line 426, in detect_encoding
2020-09-20T07:12:54,561       encoding = find_cookie(first)
2020-09-20T07:12:54,562     File "/usr/lib/python3.7/tokenize.py", line 390, in find_cookie
2020-09-20T07:12:54,562       raise SyntaxError(msg)
2020-09-20T07:12:54,562   SyntaxError: invalid or missing encoding declaration for 'scripts/foo'
2020-09-20T07:12:54,668   Building wheel for biom-format (setup.py): finished with status 'error'
2020-09-20T07:12:54,669   ERROR: Failed building wheel for biom-format
2020-09-20T07:12:54,670   Running setup.py clean for biom-format
2020-09-20T07:12:54,670   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-4k44y7g2/biom-format/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-4k44y7g2/biom-format/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2020-09-20T07:12:55,804   running clean
2020-09-20T07:12:55,806   removing 'build/temp.linux-armv7l-3.7' (and everything under it)
2020-09-20T07:12:55,810   removing 'build/lib.linux-armv7l-3.7' (and everything under it)
2020-09-20T07:12:55,828   'build/bdist.linux-armv7l' does not exist -- can't clean it
2020-09-20T07:12:55,828   removing 'build/scripts-3.7' (and everything under it)
2020-09-20T07:12:55,830   removing 'build'
2020-09-20T07:12:55,916 Failed to build biom-format
2020-09-20T07:12:55,916 ERROR: Failed to build one or more wheels
2020-09-20T07:12:55,917 Exception information:
2020-09-20T07:12:55,917 Traceback (most recent call last):
2020-09-20T07:12:55,917   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/base_command.py", line 228, in _main
2020-09-20T07:12:55,917     status = self.run(options, args)
2020-09-20T07:12:55,917   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/req_command.py", line 182, in wrapper
2020-09-20T07:12:55,917     return func(self, options, args)
2020-09-20T07:12:55,917   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/commands/wheel.py", line 185, in run
2020-09-20T07:12:55,917     "Failed to build one or more wheels"
2020-09-20T07:12:55,917 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2020-09-20T07:12:55,921 Removed build tracker: '/tmp/pip-req-tracker-1g9a1hsx'