2020-09-20T10:31:25,447 Created temporary directory: /tmp/pip-ephem-wheel-cache-quz70msf 2020-09-20T10:31:25,449 Created temporary directory: /tmp/pip-req-tracker-5pzf2gpz 2020-09-20T10:31:25,450 Initialized build tracking at /tmp/pip-req-tracker-5pzf2gpz 2020-09-20T10:31:25,450 Created build tracker: /tmp/pip-req-tracker-5pzf2gpz 2020-09-20T10:31:25,450 Entered build tracker: /tmp/pip-req-tracker-5pzf2gpz 2020-09-20T10:31:25,451 Created temporary directory: /tmp/pip-wheel-quj8e6cn 2020-09-20T10:31:25,459 1 location(s) to search for versions of umi-tools: 2020-09-20T10:31:25,459 * https://pypi.org/simple/umi-tools/ 2020-09-20T10:31:25,459 Fetching project page and analyzing links: https://pypi.org/simple/umi-tools/ 2020-09-20T10:31:25,460 Getting page https://pypi.org/simple/umi-tools/ 2020-09-20T10:31:25,461 Found index url https://pypi.org/simple 2020-09-20T10:31:25,562 Found link https://files.pythonhosted.org/packages/3a/bd/ae9ce2e2e9f99d2d5aa83210907b8fed0b93973fcd9bc0e91fa0fafc8072/umi_tools-0.0.1.tar.gz#sha256=30d47e9c6abcdf25d0ca19a4fc6320b96ed398b7a6a1ae83b60657f90d5e7824 (from https://pypi.org/simple/umi-tools/), version: 0.0.1 2020-09-20T10:31:25,562 Found link https://files.pythonhosted.org/packages/5c/3a/1048a682a3f8dc1863265fde106a645e79734d685fe0ef463388ec405f57/umi_tools-0.0.2.tar.gz#sha256=ef6a3881dad10825fbbcbd9fb139ebae2f59d059d54b2696a3bc6865d1b63c1e (from https://pypi.org/simple/umi-tools/), version: 0.0.2 2020-09-20T10:31:25,563 Found link https://files.pythonhosted.org/packages/ab/e8/3665959d2605e17762908631087bfe001f2da35744373250531d2b3005a9/umi_tools-0.0.3.tar.gz#sha256=8a7ca738a0568860d84683aa011515d6d1aa406a0a4cbdb56d53f3c7f79f4c5a (from https://pypi.org/simple/umi-tools/), version: 0.0.3 2020-09-20T10:31:25,563 Found link https://files.pythonhosted.org/packages/58/11/e65816e87bc3eeb16fdd744a1abb910ca6c220eba7480c79a4c469312b48/umi_tools-0.0.5.tar.gz#sha256=3f61d3df1f322b550d93bf90497e68c4c11bc9e06d38ec8e18ccc64b253ab3ab (from https://pypi.org/simple/umi-tools/), version: 0.0.5 2020-09-20T10:31:25,563 Found link https://files.pythonhosted.org/packages/24/21/b6071e74783bde8fc147c14b0113f5cc7bf524bd64e1af2824ace01e7c34/umi_tools-0.0.6.tar.gz#sha256=e05108bddd9b00419ea21c2c071afb2d257ba7a2e93be8ad6565d28378cff7d1 (from https://pypi.org/simple/umi-tools/), version: 0.0.6 2020-09-20T10:31:25,563 Found link https://files.pythonhosted.org/packages/48/d5/4bd188e4e5633d656fdfc5875dc6130fbd5f80b9aa0cb49c2f1ae2ca52f3/umi_tools-0.0.8.tar.gz#sha256=0e2dfa120c890d185f67e769702de9c07c02f7201bc45a6e2568e7392d6de58a (from https://pypi.org/simple/umi-tools/), version: 0.0.8 2020-09-20T10:31:25,564 Found link https://files.pythonhosted.org/packages/1c/93/693bd37063f222a307805752dd6adddc551bd66c942de27a995fe359c92d/umi_tools-0.0.11.tar.gz#sha256=266220aac02024a203b70d428b76cf8e681b69406e20393aabc1286fbc50b742 (from https://pypi.org/simple/umi-tools/), version: 0.0.11 2020-09-20T10:31:25,564 Found link https://files.pythonhosted.org/packages/f9/56/04f084fa84aacca9bb8c1f7334696421562e041541cb12f033c0bb789787/umi_tools-0.2.0.tar.gz#sha256=beaf4ba69844cb31944cead93d1cb64c226a01bb3e0354b63189a1476f3585dc (from https://pypi.org/simple/umi-tools/), version: 0.2.0 2020-09-20T10:31:25,564 Found link https://files.pythonhosted.org/packages/20/49/093781cda4bb1310fedf3fba3126f9e3b74a50f4fa268054b8981f8f0abc/umi_tools-0.2.1.tar.gz#sha256=4c548f2f3ba39b631873902d4afd4713b4a170afdc77a639c13b74209a3c66bd (from https://pypi.org/simple/umi-tools/), version: 0.2.1 2020-09-20T10:31:25,565 Found link https://files.pythonhosted.org/packages/50/bc/84b11f78a57a03326034d695b7c54509c47e17aef70ef930b15d3e4b7039/umi_tools-0.2.2.tar.gz#sha256=4160dcc4708dbaffcc4566508879f4855c07cbeb885d9e10868dae7be2eb4a2e (from https://pypi.org/simple/umi-tools/), version: 0.2.2 2020-09-20T10:31:25,565 Found link https://files.pythonhosted.org/packages/de/53/6fa261cfe6f5b3272795849a97ac53898f13849522d0f8fa7e4dd0696e15/umi_tools-0.2.3.tar.gz#sha256=4b35543afcc60e2bdd98c1c66ac0d96a3a3686b5c3729e74def1fa43b1934857 (from https://pypi.org/simple/umi-tools/), version: 0.2.3 2020-09-20T10:31:25,565 Found link https://files.pythonhosted.org/packages/db/d1/96fba739dcb00e04324d498f335c6063e83ddf1eb7932fdf2f4c402b9587/umi_tools-0.3.1.tar.gz#sha256=eb5abc3f067398a89d3f3df00a318599dd0aa7cdf0629fa92125dfbd2cd24787 (from https://pypi.org/simple/umi-tools/), version: 0.3.1 2020-09-20T10:31:25,566 Found link https://files.pythonhosted.org/packages/2f/da/4e7851fff6c95dc3476d11d45a84c4d2f2b762ff74f4744cf68c1ecbf5f7/umi_tools-0.3.3.tar.gz#sha256=7e6ac8a718a2b39b5eeb599efa928937b96d1ef3531cd11ca0acbf160f85dbe5 (from https://pypi.org/simple/umi-tools/), version: 0.3.3 2020-09-20T10:31:25,566 Found link https://files.pythonhosted.org/packages/4f/4b/97ed1d73743c5fb1cd5240f43995ff0e983022109830acca4ffdcbd854e2/umi_tools-0.3.4.tar.gz#sha256=ab628e384bd3ae38327a01082c1ea4dce29662828c5bcb831bfde32ea5733cb9 (from https://pypi.org/simple/umi-tools/), version: 0.3.4 2020-09-20T10:31:25,566 Found link https://files.pythonhosted.org/packages/78/72/b1648b56d37fff3c67c1bdfc30112a4d3d7a992af63800127cfffaa059dd/umi_tools-0.3.5.tar.gz#sha256=db3fa92fe5b658d51a71f51011f61c43e1dba840b7107f60a229fab87aef13ba (from https://pypi.org/simple/umi-tools/), version: 0.3.5 2020-09-20T10:31:25,567 Found link https://files.pythonhosted.org/packages/bb/71/f4a1716fcb27b1437bd378f93a5380632e50e8a4af828338fba29915ce19/umi_tools-0.3.6.tar.gz#sha256=6b382cdce61005de3c88fb933a797b9c503fdb787d2f798abbf84ba2489a5734 (from https://pypi.org/simple/umi-tools/), version: 0.3.6 2020-09-20T10:31:25,567 Found link https://files.pythonhosted.org/packages/7b/e5/1465ea3e67fe8c3c976878411b5cda21dc2fe35cbc1b6eb3d94b58fae79e/umi_tools-0.3.7.tar.gz#sha256=373a90f4bf387e53166e6c1a3a42e60e70a6257a22f12e73284e6d66c4eadc34 (from https://pypi.org/simple/umi-tools/), version: 0.3.7 2020-09-20T10:31:25,567 Found link https://files.pythonhosted.org/packages/98/93/5543380bcc95445c1f3dc00118afcdfb2dfdca9ebd6b42ca1916ebf77a14/umi_tools-0.4.0.tar.gz#sha256=1ca2309549d84daed3a8532284177c0275c019ba826cc3ad46cc5588bc7120bc (from https://pypi.org/simple/umi-tools/), version: 0.4.0 2020-09-20T10:31:25,567 Found link https://files.pythonhosted.org/packages/a6/bb/e1d3ac6c8f12d1684dc869ed4d7d565179cceaf2121271601bbdaf7ce392/umi_tools-0.4.1.tar.gz#sha256=448de9f0a8c11e7df010a06f3b403affea754fdf8bc4aa88b36714b111241455 (from https://pypi.org/simple/umi-tools/), version: 0.4.1 2020-09-20T10:31:25,568 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f7/67/83876d53fbb0424a65cc90155eebd8c1446bdccca6faa0cb8e5f11d9c79c/umi_tools-0.4.2-py2.7.egg#sha256=1557e6553d6706a4ebf222367e583463720bf6b81687b2d1010446e2a5e6b0c2 (from https://pypi.org/simple/umi-tools/) 2020-09-20T10:31:25,568 Found link https://files.pythonhosted.org/packages/c3/d3/de2fc623022381d124dc671c06519a47b78723824829774797f88c24fdc7/umi_tools-0.4.2.tar.gz#sha256=b1a72bf09a83034f1a8579aa3c212af92ff29658da4576f2e189df98ead273e0 (from https://pypi.org/simple/umi-tools/), version: 0.4.2 2020-09-20T10:31:25,568 Found link https://files.pythonhosted.org/packages/e3/b0/5b6755c8aa4a19d68e3d92941ab2c57b5a31d571abbbd77c1f0ece903a2a/umi_tools-0.4.3.tar.gz#sha256=69bea4125591df11a44c8d95f6c9ede29f4b0e09f016d45b0ace5f5c5a278ff7 (from https://pypi.org/simple/umi-tools/), version: 0.4.3 2020-09-20T10:31:25,569 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/29/8d/8496556a99da30880e4022ce53bc65b1f623114ed6117a293b93a2ac74bb/umi_tools-0.4.4-py2.7.egg#sha256=bb80f84beb345e7c3312285cc305a05efc7078ffc6b24fc79042b2047294f0fa (from https://pypi.org/simple/umi-tools/) 2020-09-20T10:31:25,569 Found link https://files.pythonhosted.org/packages/a6/65/21321eb0798952ddbeab0d74c3d97b3be51aa12cbb2d332e538c16453653/umi_tools-0.4.4.tar.gz#sha256=feb1903c515f3d5a081ea4b3a74ab2d4904b687d7fc1858e0bf2d8b60a413586 (from https://pypi.org/simple/umi-tools/), version: 0.4.4 2020-09-20T10:31:25,569 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/00/bf/0299f34b13680d9de2ffa1ef789fdbd2a8b3d6c7de679b22cc272d5f67ab/umi_tools-0.5.0-py2.7-macosx-10.6-x86_64.egg#sha256=1da8c045981346bc9df85cfc260f6939238123d6fc22118b30b41f3124739bf0 (from https://pypi.org/simple/umi-tools/) 2020-09-20T10:31:25,569 Found link https://files.pythonhosted.org/packages/60/27/6a0eb9b5e6bafc69fc401e6dcc5e42e3d08b00fca37600cc5c1b2f55f333/umi_tools-0.5.0.tar.gz#sha256=a535a0a67d30c98fa2d29f8aa5f3b40cd94c2058073a7541be08383964672912 (from https://pypi.org/simple/umi-tools/), version: 0.5.0 2020-09-20T10:31:25,570 Found link https://files.pythonhosted.org/packages/64/68/edc4934b241a1e0d106f646586413728c05c80f0c3ff36f03ad0c07c60bb/umi_tools-0.5.1.tar.gz#sha256=d4102dbcbf2d8a67e243f07211590186345a90747c384cce36a614e394dc35dc (from https://pypi.org/simple/umi-tools/), version: 0.5.1 2020-09-20T10:31:25,570 Found link https://files.pythonhosted.org/packages/a0/73/36fde8678ceaaf9d4d5d09274641e592b82b369b73bad39feec7a7b07f26/umi_tools-0.5.2.tar.gz#sha256=5e6278a05f76a53315ef9f4a87fc149b847aa15b2e9ecd1bfd298835d47d43b9 (from https://pypi.org/simple/umi-tools/), version: 0.5.2 2020-09-20T10:31:25,570 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/1e/c7/f79ad7db46c3cffe82f7b6e0418763781d6492e9a2e7ecbeffcdce5a6d48/umi_tools-0.5.3-py3.6-macosx-10.7-x86_64.egg#sha256=840bbada205a1850c0f4e25b81496016b7c0fd50b1e12ad00c5de6e36603b6a5 (from https://pypi.org/simple/umi-tools/) 2020-09-20T10:31:25,571 Found link https://files.pythonhosted.org/packages/35/17/1537f6f6c3d192bb916fe6cf569d3c1036ecca9c99f253767c1dec744228/umi_tools-0.5.3.tar.gz#sha256=106bd606bcfb41b8c949b33f9dd59d56f374013fa7ad89609e845200de560758 (from https://pypi.org/simple/umi-tools/), version: 0.5.3 2020-09-20T10:31:25,571 Found link https://files.pythonhosted.org/packages/f4/c2/2065bef0d844e8ad8fe1286b831dbbd4b9cbcddff800757b2eb50caf2ecb/umi_tools-0.5.4.tar.gz#sha256=80e2f5f07d2d689cf8639920bcaef531eff8cdc3ef73f37cfef068b3e5400878 (from https://pypi.org/simple/umi-tools/), version: 0.5.4 2020-09-20T10:31:25,571 Found link https://files.pythonhosted.org/packages/21/6f/cc99924e913a91092fd08305fd91105a7cda03e4e0ad1cfd9efc7ecf6436/umi_tools-0.5.5.tar.gz#sha256=d9422bb69b876ccc20dac346054d6e5cb1f8f48613e76a55486a54bc9e8abccb (from https://pypi.org/simple/umi-tools/), version: 0.5.5 2020-09-20T10:31:25,575 Skipping link: none of the wheel's tags match: cp37-cp37m-macosx_10_7_x86_64: https://files.pythonhosted.org/packages/0a/c3/32c7a6e6b6f4c9be85c7545a86b886b925b76d1e082c20c2614f8a79119a/umi_tools-1.0.0-cp37-cp37m-macosx_10_7_x86_64.whl#sha256=6e3f126b7943a7d4df76a1e9fb3159a6fceb23e03e107683daa90a978c8cb701 (from https://pypi.org/simple/umi-tools/) 2020-09-20T10:31:25,575 Found link https://files.pythonhosted.org/packages/0d/cf/e5352a328c7276310623086104c02eff9ec420604cd9407c98e82afc1dda/umi_tools-1.0.0.tar.gz#sha256=8ac8b8c488613122d11c97c404b3e7894aa31915e258bd2ae40974b6c3dfc323 (from https://pypi.org/simple/umi-tools/), version: 1.0.0 2020-09-20T10:31:25,576 Found link https://files.pythonhosted.org/packages/34/33/eda746043b29b08bfbd12f9f570ded96e51fb5985a048d757b8b00b96306/umi_tools-1.0.1.tar.gz#sha256=f7bc88f7531613700bd617eff968526dfbe12280e87ee5fcdf9321117a73639f (from https://pypi.org/simple/umi-tools/), version: 1.0.1 2020-09-20T10:31:25,581 Given no hashes to check 1 links for project 'umi-tools': discarding no candidates 2020-09-20T10:31:25,582 Using version 0.2.2 (newest of versions: 0.2.2) 2020-09-20T10:31:25,585 Collecting umi-tools==0.2.2 2020-09-20T10:31:25,587 Created temporary directory: /tmp/pip-unpack-qb951idr 2020-09-20T10:31:25,626 Downloading umi_tools-0.2.2.tar.gz (40 kB) 2020-09-20T10:31:25,693 Added umi-tools==0.2.2 from https://files.pythonhosted.org/packages/50/bc/84b11f78a57a03326034d695b7c54509c47e17aef70ef930b15d3e4b7039/umi_tools-0.2.2.tar.gz#sha256=4160dcc4708dbaffcc4566508879f4855c07cbeb885d9e10868dae7be2eb4a2e to build tracker '/tmp/pip-req-tracker-5pzf2gpz' 2020-09-20T10:31:25,694 Running setup.py (path:/tmp/pip-wheel-quj8e6cn/umi-tools/setup.py) egg_info for package umi-tools 2020-09-20T10:31:25,695 Created temporary directory: /tmp/pip-pip-egg-info-3o249uth 2020-09-20T10:31:25,696 Running command python setup.py egg_info 2020-09-20T10:31:26,548 Traceback (most recent call last): 2020-09-20T10:31:26,548 File "/tmp/pip-wheel-quj8e6cn/umi-tools/setup.py", line 13, in 2020-09-20T10:31:26,549 import pysam 2020-09-20T10:31:26,549 ModuleNotFoundError: No module named 'pysam' 2020-09-20T10:31:26,550 During handling of the above exception, another exception occurred: 2020-09-20T10:31:26,551 Traceback (most recent call last): 2020-09-20T10:31:26,551 File "", line 1, in 2020-09-20T10:31:26,552 File "/tmp/pip-wheel-quj8e6cn/umi-tools/setup.py", line 16, in 2020-09-20T10:31:26,552 "UMI-tools requires pysam to " 2020-09-20T10:31:26,552 ImportError: UMI-tools requires pysam to be installed before running setup.py (pip install pysam) 2020-09-20T10:31:26,596 ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output. 2020-09-20T10:31:26,597 Exception information: 2020-09-20T10:31:26,597 Traceback (most recent call last): 2020-09-20T10:31:26,597 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/base_command.py", line 228, in _main 2020-09-20T10:31:26,597 status = self.run(options, args) 2020-09-20T10:31:26,597 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/req_command.py", line 182, in wrapper 2020-09-20T10:31:26,597 return func(self, options, args) 2020-09-20T10:31:26,597 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/commands/wheel.py", line 156, in run 2020-09-20T10:31:26,597 reqs, check_supported_wheels=True 2020-09-20T10:31:26,597 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolution/legacy/resolver.py", line 183, in resolve 2020-09-20T10:31:26,597 discovered_reqs.extend(self._resolve_one(requirement_set, req)) 2020-09-20T10:31:26,597 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolution/legacy/resolver.py", line 388, in _resolve_one 2020-09-20T10:31:26,597 abstract_dist = self._get_abstract_dist_for(req_to_install) 2020-09-20T10:31:26,597 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolution/legacy/resolver.py", line 340, in _get_abstract_dist_for 2020-09-20T10:31:26,597 abstract_dist = self.preparer.prepare_linked_requirement(req) 2020-09-20T10:31:26,597 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/operations/prepare.py", line 483, in prepare_linked_requirement 2020-09-20T10:31:26,597 req, self.req_tracker, self.finder, self.build_isolation, 2020-09-20T10:31:26,597 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/operations/prepare.py", line 91, in _get_prepared_distribution 2020-09-20T10:31:26,597 abstract_dist.prepare_distribution_metadata(finder, build_isolation) 2020-09-20T10:31:26,597 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/distributions/sdist.py", line 40, in prepare_distribution_metadata 2020-09-20T10:31:26,597 self.req.prepare_metadata() 2020-09-20T10:31:26,597 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/req/req_install.py", line 555, in prepare_metadata 2020-09-20T10:31:26,597 self.metadata_directory = self._generate_metadata() 2020-09-20T10:31:26,597 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/req/req_install.py", line 535, in _generate_metadata 2020-09-20T10:31:26,597 details=self.name or "from {}".format(self.link) 2020-09-20T10:31:26,597 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 73, in generate_metadata 2020-09-20T10:31:26,597 command_desc='python setup.py egg_info', 2020-09-20T10:31:26,597 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/utils/subprocess.py", line 242, in call_subprocess 2020-09-20T10:31:26,597 raise InstallationError(exc_msg) 2020-09-20T10:31:26,597 pip._internal.exceptions.InstallationError: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output. 2020-09-20T10:31:26,604 Removed umi-tools==0.2.2 from https://files.pythonhosted.org/packages/50/bc/84b11f78a57a03326034d695b7c54509c47e17aef70ef930b15d3e4b7039/umi_tools-0.2.2.tar.gz#sha256=4160dcc4708dbaffcc4566508879f4855c07cbeb885d9e10868dae7be2eb4a2e from build tracker '/tmp/pip-req-tracker-5pzf2gpz' 2020-09-20T10:31:26,605 Removed build tracker: '/tmp/pip-req-tracker-5pzf2gpz'