2020-09-20T15:13:49,905 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-09-20T15:13:50,614 Created temporary directory: /tmp/pip-ephem-wheel-cache-1wu5pfcr
2020-09-20T15:13:50,619 Created temporary directory: /tmp/pip-req-tracker-4azlzqn9
2020-09-20T15:13:50,620 Initialized build tracking at /tmp/pip-req-tracker-4azlzqn9
2020-09-20T15:13:50,620 Created build tracker: /tmp/pip-req-tracker-4azlzqn9
2020-09-20T15:13:50,621 Entered build tracker: /tmp/pip-req-tracker-4azlzqn9
2020-09-20T15:13:50,622 Created temporary directory: /tmp/pip-wheel-k397goqo
2020-09-20T15:13:50,639 1 location(s) to search for versions of photon-ptm:
2020-09-20T15:13:50,639 * https://pypi.org/simple/photon-ptm/
2020-09-20T15:13:50,640 Fetching project page and analyzing links: https://pypi.org/simple/photon-ptm/
2020-09-20T15:13:50,642 Getting page https://pypi.org/simple/photon-ptm/
2020-09-20T15:13:50,646 Found index url https://pypi.org/simple
2020-09-20T15:13:50,884   Found link https://files.pythonhosted.org/packages/44/cf/99b2ba3a1532a224b1d2ca58df76cfe5744a4c3d3a10cf34c0bacdae80b0/photon_ptm-0.2.0.tar.gz#sha256=37323b9a6c782de66a11a7e980244e8f5b8f6f499a82970bebcb98e214027022 (from https://pypi.org/simple/photon-ptm/), version: 0.2.0
2020-09-20T15:13:50,885   Found link https://files.pythonhosted.org/packages/b2/cc/033880918ac5e59ca5bb2fea598ba1e85550990df30f370d59eed845804e/photon_ptm-0.2.1.tar.gz#sha256=80fe4807a9032cafcea4ca23944cbd17eb4ff15cf1804bb60b9e46d569cf2259 (from https://pypi.org/simple/photon-ptm/), version: 0.2.1
2020-09-20T15:13:50,886   Found link https://files.pythonhosted.org/packages/e5/9a/ed5a90fc79a4f1e6605715b1fbc14e245f7e616156e767e4fb23f24bcaf1/photon_ptm-0.2.2.tar.gz#sha256=1499710d5b85aacf0e9618a78de253c6836e3baa1714d5c90618b5111da9894f (from https://pypi.org/simple/photon-ptm/), version: 0.2.2
2020-09-20T15:13:50,887   Found link https://files.pythonhosted.org/packages/17/0c/5057a42906201cc00b94490c1b4a305b5745147b67e2ea1f2894e1509c8a/photon_ptm-0.2.3.tar.gz#sha256=6b6a374f66dc2d3d742134bab4b98334066eb14984a90bab9bbf3e066c805c97 (from https://pypi.org/simple/photon-ptm/), version: 0.2.3
2020-09-20T15:13:50,888   Found link https://files.pythonhosted.org/packages/c9/f9/f70f048cb9f62cb34d48ed8d1adaabe39424320b693bcce5a8db105829df/photon_ptm-0.2.4.tar.gz#sha256=72fcf8df33ccf1e27455387422d70883fd9cf1324fda3f1a46dc03b1de51c032 (from https://pypi.org/simple/photon-ptm/), version: 0.2.4
2020-09-20T15:13:50,889   Found link https://files.pythonhosted.org/packages/e0/e3/46802b8d193bc76c0a68a536dfe6f425aa64f67b10db79afbb6fab2fc5de/photon_ptm-0.2.5.tar.gz#sha256=7fd86dc30aa20be8d27ef3f9ce66fc8281c0c2b83d206fa892049df298ab92c3 (from https://pypi.org/simple/photon-ptm/), version: 0.2.5
2020-09-20T15:13:50,890   Found link https://files.pythonhosted.org/packages/a6/5c/c35cc366b3437cbf2578889f3fff385d926e7196606a18535835f91ada4a/photon_ptm-0.2.6.tar.gz#sha256=73faafd3e570605545c99a75b1d49a44d915e1442cce20e4a64d38a1e4272b0c (from https://pypi.org/simple/photon-ptm/), version: 0.2.6
2020-09-20T15:13:50,891   Found link https://files.pythonhosted.org/packages/8f/bf/d4bf8497043a39986f7d6b0a7cf58eb0b2402461a1dd70c093a1567bd156/photon_ptm-0.2.7.tar.gz#sha256=09d0790935994fb0da58735ef8cc6b3e71bf67ca019fd0fbf15f21bd9c547eca (from https://pypi.org/simple/photon-ptm/), version: 0.2.7
2020-09-20T15:13:50,891   Found link https://files.pythonhosted.org/packages/49/0b/68bed752a43fd97769e76617c976556b5678dba1a5483d543f3fba148ea1/photon_ptm-0.2.8.tar.gz#sha256=d0cf56ec8204921271db32b1191ca8aa83b231a36d31e6b93705a012a70c27f9 (from https://pypi.org/simple/photon-ptm/), version: 0.2.8
2020-09-20T15:13:50,892   Found link https://files.pythonhosted.org/packages/d3/d1/4ca6e77f2a70985409e46a11321fa3474240d520c64f2dc1fcf09dbab43c/photon_ptm-0.3.0.tar.gz#sha256=df96edc71350622ee5316da2da28e1832a4a8ed2cf03df4860ceaa9f4539fba3 (from https://pypi.org/simple/photon-ptm/), version: 0.3.0
2020-09-20T15:13:50,893   Found link https://files.pythonhosted.org/packages/10/d9/90af00c6f6982471ede984cdead4e7083a2e803dbc4ccecd7cd8703a5175/photon_ptm-0.3.1.tar.gz#sha256=ffbe2381bb1f84a52e6fa82a0cc0afce181ab93c28e4fc587080f4b1a60b0f13 (from https://pypi.org/simple/photon-ptm/), version: 0.3.1
2020-09-20T15:13:50,906 Given no hashes to check 1 links for project 'photon-ptm': discarding no candidates
2020-09-20T15:13:50,908 Using version 0.2.1 (newest of versions: 0.2.1)
2020-09-20T15:13:50,916 Collecting photon-ptm==0.2.1
2020-09-20T15:13:50,921   Created temporary directory: /tmp/pip-unpack-hwn3thil
2020-09-20T15:13:51,013   Downloading photon_ptm-0.2.1.tar.gz (21 kB)
2020-09-20T15:13:51,222   Added photon-ptm==0.2.1 from https://files.pythonhosted.org/packages/b2/cc/033880918ac5e59ca5bb2fea598ba1e85550990df30f370d59eed845804e/photon_ptm-0.2.1.tar.gz#sha256=80fe4807a9032cafcea4ca23944cbd17eb4ff15cf1804bb60b9e46d569cf2259 to build tracker '/tmp/pip-req-tracker-4azlzqn9'
2020-09-20T15:13:51,225     Running setup.py (path:/tmp/pip-wheel-k397goqo/photon-ptm/setup.py) egg_info for package photon-ptm
2020-09-20T15:13:51,228     Created temporary directory: /tmp/pip-pip-egg-info-ljb3pa5d
2020-09-20T15:13:51,229     Running command python setup.py egg_info
2020-09-20T15:13:53,416     running egg_info
2020-09-20T15:13:53,422     creating /tmp/pip-pip-egg-info-ljb3pa5d/photon_ptm.egg-info
2020-09-20T15:13:53,425     writing dependency_links to /tmp/pip-pip-egg-info-ljb3pa5d/photon_ptm.egg-info/dependency_links.txt
2020-09-20T15:13:53,428     writing requirements to /tmp/pip-pip-egg-info-ljb3pa5d/photon_ptm.egg-info/requires.txt
2020-09-20T15:13:53,430     writing /tmp/pip-pip-egg-info-ljb3pa5d/photon_ptm.egg-info/PKG-INFO
2020-09-20T15:13:53,437     writing top-level names to /tmp/pip-pip-egg-info-ljb3pa5d/photon_ptm.egg-info/top_level.txt
2020-09-20T15:13:53,441     writing manifest file '/tmp/pip-pip-egg-info-ljb3pa5d/photon_ptm.egg-info/SOURCES.txt'
2020-09-20T15:13:53,803     reading manifest file '/tmp/pip-pip-egg-info-ljb3pa5d/photon_ptm.egg-info/SOURCES.txt'
2020-09-20T15:13:53,807     reading manifest template 'MANIFEST.in'
2020-09-20T15:13:53,814     writing manifest file '/tmp/pip-pip-egg-info-ljb3pa5d/photon_ptm.egg-info/SOURCES.txt'
2020-09-20T15:13:53,949   Source in /tmp/pip-wheel-k397goqo/photon-ptm has version 0.2.1, which satisfies requirement photon-ptm==0.2.1 from https://files.pythonhosted.org/packages/b2/cc/033880918ac5e59ca5bb2fea598ba1e85550990df30f370d59eed845804e/photon_ptm-0.2.1.tar.gz#sha256=80fe4807a9032cafcea4ca23944cbd17eb4ff15cf1804bb60b9e46d569cf2259
2020-09-20T15:13:53,951   Removed photon-ptm==0.2.1 from https://files.pythonhosted.org/packages/b2/cc/033880918ac5e59ca5bb2fea598ba1e85550990df30f370d59eed845804e/photon_ptm-0.2.1.tar.gz#sha256=80fe4807a9032cafcea4ca23944cbd17eb4ff15cf1804bb60b9e46d569cf2259 from build tracker '/tmp/pip-req-tracker-4azlzqn9'
2020-09-20T15:13:53,957 Building wheels for collected packages: photon-ptm
2020-09-20T15:13:53,966   Created temporary directory: /tmp/pip-wheel-2mllzyt1
2020-09-20T15:13:53,967   Building wheel for photon-ptm (setup.py): started
2020-09-20T15:13:53,968   Destination directory: /tmp/pip-wheel-2mllzyt1
2020-09-20T15:13:53,968   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-k397goqo/photon-ptm/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-k397goqo/photon-ptm/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-2mllzyt1
2020-09-20T15:13:56,182   running bdist_wheel
2020-09-20T15:13:56,198   running build
2020-09-20T15:13:56,199   running build_py
2020-09-20T15:13:56,538   creating build
2020-09-20T15:13:56,539   creating build/lib
2020-09-20T15:13:56,540   creating build/lib/phos
2020-09-20T15:13:56,543   copying phos/version.py -> build/lib/phos
2020-09-20T15:13:56,547   copying phos/defaults.py -> build/lib/phos
2020-09-20T15:13:56,551   copying phos/__init__.py -> build/lib/phos
2020-09-20T15:13:56,555   copying phos/app.py -> build/lib/phos
2020-09-20T15:13:56,560   copying phos/pipeline.py -> build/lib/phos
2020-09-20T15:13:56,566   creating build/lib/phos/util
2020-09-20T15:13:56,568   copying phos/util/mapping.py -> build/lib/phos/util
2020-09-20T15:13:56,575   copying phos/util/io.py -> build/lib/phos/util
2020-09-20T15:13:56,580   copying phos/util/__init__.py -> build/lib/phos/util
2020-09-20T15:13:56,588   creating build/lib/phos/data
2020-09-20T15:13:56,590   copying phos/data/network.py -> build/lib/phos/data
2020-09-20T15:13:56,594   copying phos/data/__init__.py -> build/lib/phos/data
2020-09-20T15:13:56,599   copying phos/data/silac.py -> build/lib/phos/data
2020-09-20T15:13:56,603   copying phos/data/read.py -> build/lib/phos/data
2020-09-20T15:13:56,607   copying phos/data/functional_sites.py -> build/lib/phos/data
2020-09-20T15:13:56,616   creating build/lib/phos/algo
2020-09-20T15:13:56,618   copying phos/algo/anat.py -> build/lib/phos/algo
2020-09-20T15:13:56,625   copying phos/algo/__init__.py -> build/lib/phos/algo
2020-09-20T15:13:56,630   copying phos/algo/subnetwork.py -> build/lib/phos/algo
2020-09-20T15:13:56,635   copying phos/algo/logistic_regression.py -> build/lib/phos/algo
2020-09-20T15:13:56,639   copying phos/algo/functional_sites.py -> build/lib/phos/algo
2020-09-20T15:13:56,643   copying phos/algo/activity.py -> build/lib/phos/algo
2020-09-20T15:13:56,666   installing to build/bdist.linux-armv7l/wheel
2020-09-20T15:13:56,667   running install
2020-09-20T15:13:56,671   running install_lib
2020-09-20T15:13:56,679   creating build/bdist.linux-armv7l
2020-09-20T15:13:56,680   creating build/bdist.linux-armv7l/wheel
2020-09-20T15:13:56,683   creating build/bdist.linux-armv7l/wheel/phos
2020-09-20T15:13:56,687   creating build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T15:13:56,689   copying build/lib/phos/util/mapping.py -> build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T15:13:56,695   copying build/lib/phos/util/io.py -> build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T15:13:56,701   copying build/lib/phos/util/__init__.py -> build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T15:13:56,708   creating build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T15:13:56,711   copying build/lib/phos/data/network.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T15:13:56,717   copying build/lib/phos/data/__init__.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T15:13:56,723   copying build/lib/phos/data/silac.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T15:13:56,728   copying build/lib/phos/data/read.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T15:13:56,734   copying build/lib/phos/data/functional_sites.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T15:13:56,740   copying build/lib/phos/version.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T15:13:56,746   copying build/lib/phos/defaults.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T15:13:56,752   copying build/lib/phos/__init__.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T15:13:56,757   copying build/lib/phos/app.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T15:13:56,765   creating build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T15:13:56,767   copying build/lib/phos/algo/anat.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T15:13:56,775   copying build/lib/phos/algo/__init__.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T15:13:56,780   copying build/lib/phos/algo/subnetwork.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T15:13:56,786   copying build/lib/phos/algo/logistic_regression.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T15:13:56,792   copying build/lib/phos/algo/functional_sites.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T15:13:56,798   copying build/lib/phos/algo/activity.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T15:13:56,804   copying build/lib/phos/pipeline.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T15:13:56,810   running install_egg_info
2020-09-20T15:13:56,866   running egg_info
2020-09-20T15:13:56,867   writing photon_ptm.egg-info/PKG-INFO
2020-09-20T15:13:56,873   writing dependency_links to photon_ptm.egg-info/dependency_links.txt
2020-09-20T15:13:56,876   writing requirements to photon_ptm.egg-info/requires.txt
2020-09-20T15:13:56,878   writing top-level names to photon_ptm.egg-info/top_level.txt
2020-09-20T15:13:56,892   reading manifest file 'photon_ptm.egg-info/SOURCES.txt'
2020-09-20T15:13:56,896   reading manifest template 'MANIFEST.in'
2020-09-20T15:13:56,904   writing manifest file 'photon_ptm.egg-info/SOURCES.txt'
2020-09-20T15:13:56,908   Copying photon_ptm.egg-info to build/bdist.linux-armv7l/wheel/photon_ptm-0.2.1-py3.5.egg-info
2020-09-20T15:13:56,935   running install_scripts
2020-09-20T15:13:57,152   creating build/bdist.linux-armv7l/wheel/photon_ptm-0.2.1.dist-info/WHEEL
2020-09-20T15:13:57,438   Building wheel for photon-ptm (setup.py): finished with status 'done'
2020-09-20T15:13:57,443   Created wheel for photon-ptm: filename=photon_ptm-0.2.1-py3-none-any.whl size=28327 sha256=251db34d7b217d19b7735e886869f062f7c404efe88386adb2a24dcc26860687
2020-09-20T15:13:57,444   Stored in directory: /tmp/pip-ephem-wheel-cache-1wu5pfcr/wheels/91/55/6d/7a0708742fadb374451f879eae06fddede391e1fe50230b1a1
2020-09-20T15:13:57,448 Successfully built photon-ptm
2020-09-20T15:13:57,459 Removed build tracker: '/tmp/pip-req-tracker-4azlzqn9'