2020-09-20T15:18:05,470 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-09-20T15:18:06,144 Created temporary directory: /tmp/pip-ephem-wheel-cache-wd01zs4f
2020-09-20T15:18:06,149 Created temporary directory: /tmp/pip-req-tracker-z4cachy4
2020-09-20T15:18:06,149 Initialized build tracking at /tmp/pip-req-tracker-z4cachy4
2020-09-20T15:18:06,150 Created build tracker: /tmp/pip-req-tracker-z4cachy4
2020-09-20T15:18:06,150 Entered build tracker: /tmp/pip-req-tracker-z4cachy4
2020-09-20T15:18:06,152 Created temporary directory: /tmp/pip-wheel-8ao4x7yq
2020-09-20T15:18:06,169 1 location(s) to search for versions of photon-ptm:
2020-09-20T15:18:06,169 * https://pypi.org/simple/photon-ptm/
2020-09-20T15:18:06,169 Fetching project page and analyzing links: https://pypi.org/simple/photon-ptm/
2020-09-20T15:18:06,171 Getting page https://pypi.org/simple/photon-ptm/
2020-09-20T15:18:06,176 Found index url https://pypi.org/simple
2020-09-20T15:18:06,417   Found link https://files.pythonhosted.org/packages/44/cf/99b2ba3a1532a224b1d2ca58df76cfe5744a4c3d3a10cf34c0bacdae80b0/photon_ptm-0.2.0.tar.gz#sha256=37323b9a6c782de66a11a7e980244e8f5b8f6f499a82970bebcb98e214027022 (from https://pypi.org/simple/photon-ptm/), version: 0.2.0
2020-09-20T15:18:06,418   Found link https://files.pythonhosted.org/packages/b2/cc/033880918ac5e59ca5bb2fea598ba1e85550990df30f370d59eed845804e/photon_ptm-0.2.1.tar.gz#sha256=80fe4807a9032cafcea4ca23944cbd17eb4ff15cf1804bb60b9e46d569cf2259 (from https://pypi.org/simple/photon-ptm/), version: 0.2.1
2020-09-20T15:18:06,419   Found link https://files.pythonhosted.org/packages/e5/9a/ed5a90fc79a4f1e6605715b1fbc14e245f7e616156e767e4fb23f24bcaf1/photon_ptm-0.2.2.tar.gz#sha256=1499710d5b85aacf0e9618a78de253c6836e3baa1714d5c90618b5111da9894f (from https://pypi.org/simple/photon-ptm/), version: 0.2.2
2020-09-20T15:18:06,420   Found link https://files.pythonhosted.org/packages/17/0c/5057a42906201cc00b94490c1b4a305b5745147b67e2ea1f2894e1509c8a/photon_ptm-0.2.3.tar.gz#sha256=6b6a374f66dc2d3d742134bab4b98334066eb14984a90bab9bbf3e066c805c97 (from https://pypi.org/simple/photon-ptm/), version: 0.2.3
2020-09-20T15:18:06,421   Found link https://files.pythonhosted.org/packages/c9/f9/f70f048cb9f62cb34d48ed8d1adaabe39424320b693bcce5a8db105829df/photon_ptm-0.2.4.tar.gz#sha256=72fcf8df33ccf1e27455387422d70883fd9cf1324fda3f1a46dc03b1de51c032 (from https://pypi.org/simple/photon-ptm/), version: 0.2.4
2020-09-20T15:18:06,422   Found link https://files.pythonhosted.org/packages/e0/e3/46802b8d193bc76c0a68a536dfe6f425aa64f67b10db79afbb6fab2fc5de/photon_ptm-0.2.5.tar.gz#sha256=7fd86dc30aa20be8d27ef3f9ce66fc8281c0c2b83d206fa892049df298ab92c3 (from https://pypi.org/simple/photon-ptm/), version: 0.2.5
2020-09-20T15:18:06,422   Found link https://files.pythonhosted.org/packages/a6/5c/c35cc366b3437cbf2578889f3fff385d926e7196606a18535835f91ada4a/photon_ptm-0.2.6.tar.gz#sha256=73faafd3e570605545c99a75b1d49a44d915e1442cce20e4a64d38a1e4272b0c (from https://pypi.org/simple/photon-ptm/), version: 0.2.6
2020-09-20T15:18:06,423   Found link https://files.pythonhosted.org/packages/8f/bf/d4bf8497043a39986f7d6b0a7cf58eb0b2402461a1dd70c093a1567bd156/photon_ptm-0.2.7.tar.gz#sha256=09d0790935994fb0da58735ef8cc6b3e71bf67ca019fd0fbf15f21bd9c547eca (from https://pypi.org/simple/photon-ptm/), version: 0.2.7
2020-09-20T15:18:06,424   Found link https://files.pythonhosted.org/packages/49/0b/68bed752a43fd97769e76617c976556b5678dba1a5483d543f3fba148ea1/photon_ptm-0.2.8.tar.gz#sha256=d0cf56ec8204921271db32b1191ca8aa83b231a36d31e6b93705a012a70c27f9 (from https://pypi.org/simple/photon-ptm/), version: 0.2.8
2020-09-20T15:18:06,425   Found link https://files.pythonhosted.org/packages/d3/d1/4ca6e77f2a70985409e46a11321fa3474240d520c64f2dc1fcf09dbab43c/photon_ptm-0.3.0.tar.gz#sha256=df96edc71350622ee5316da2da28e1832a4a8ed2cf03df4860ceaa9f4539fba3 (from https://pypi.org/simple/photon-ptm/), version: 0.3.0
2020-09-20T15:18:06,426   Found link https://files.pythonhosted.org/packages/10/d9/90af00c6f6982471ede984cdead4e7083a2e803dbc4ccecd7cd8703a5175/photon_ptm-0.3.1.tar.gz#sha256=ffbe2381bb1f84a52e6fa82a0cc0afce181ab93c28e4fc587080f4b1a60b0f13 (from https://pypi.org/simple/photon-ptm/), version: 0.3.1
2020-09-20T15:18:06,439 Given no hashes to check 1 links for project 'photon-ptm': discarding no candidates
2020-09-20T15:18:06,441 Using version 0.2.3 (newest of versions: 0.2.3)
2020-09-20T15:18:06,450 Collecting photon-ptm==0.2.3
2020-09-20T15:18:06,455   Created temporary directory: /tmp/pip-unpack-egf0ndd6
2020-09-20T15:18:06,546   Downloading photon_ptm-0.2.3.tar.gz (19 kB)
2020-09-20T15:18:06,753   Added photon-ptm==0.2.3 from https://files.pythonhosted.org/packages/17/0c/5057a42906201cc00b94490c1b4a305b5745147b67e2ea1f2894e1509c8a/photon_ptm-0.2.3.tar.gz#sha256=6b6a374f66dc2d3d742134bab4b98334066eb14984a90bab9bbf3e066c805c97 to build tracker '/tmp/pip-req-tracker-z4cachy4'
2020-09-20T15:18:06,756     Running setup.py (path:/tmp/pip-wheel-8ao4x7yq/photon-ptm/setup.py) egg_info for package photon-ptm
2020-09-20T15:18:06,759     Created temporary directory: /tmp/pip-pip-egg-info-pt75krs1
2020-09-20T15:18:06,760     Running command python setup.py egg_info
2020-09-20T15:18:09,117     running egg_info
2020-09-20T15:18:09,123     creating /tmp/pip-pip-egg-info-pt75krs1/photon_ptm.egg-info
2020-09-20T15:18:09,126     writing dependency_links to /tmp/pip-pip-egg-info-pt75krs1/photon_ptm.egg-info/dependency_links.txt
2020-09-20T15:18:09,129     writing requirements to /tmp/pip-pip-egg-info-pt75krs1/photon_ptm.egg-info/requires.txt
2020-09-20T15:18:09,132     writing top-level names to /tmp/pip-pip-egg-info-pt75krs1/photon_ptm.egg-info/top_level.txt
2020-09-20T15:18:09,134     writing /tmp/pip-pip-egg-info-pt75krs1/photon_ptm.egg-info/PKG-INFO
2020-09-20T15:18:09,143     writing manifest file '/tmp/pip-pip-egg-info-pt75krs1/photon_ptm.egg-info/SOURCES.txt'
2020-09-20T15:18:09,526     reading manifest file '/tmp/pip-pip-egg-info-pt75krs1/photon_ptm.egg-info/SOURCES.txt'
2020-09-20T15:18:09,529     reading manifest template 'MANIFEST.in'
2020-09-20T15:18:09,537     writing manifest file '/tmp/pip-pip-egg-info-pt75krs1/photon_ptm.egg-info/SOURCES.txt'
2020-09-20T15:18:09,675   Source in /tmp/pip-wheel-8ao4x7yq/photon-ptm has version 0.2.3, which satisfies requirement photon-ptm==0.2.3 from https://files.pythonhosted.org/packages/17/0c/5057a42906201cc00b94490c1b4a305b5745147b67e2ea1f2894e1509c8a/photon_ptm-0.2.3.tar.gz#sha256=6b6a374f66dc2d3d742134bab4b98334066eb14984a90bab9bbf3e066c805c97
2020-09-20T15:18:09,677   Removed photon-ptm==0.2.3 from https://files.pythonhosted.org/packages/17/0c/5057a42906201cc00b94490c1b4a305b5745147b67e2ea1f2894e1509c8a/photon_ptm-0.2.3.tar.gz#sha256=6b6a374f66dc2d3d742134bab4b98334066eb14984a90bab9bbf3e066c805c97 from build tracker '/tmp/pip-req-tracker-z4cachy4'
2020-09-20T15:18:09,682 Building wheels for collected packages: photon-ptm
2020-09-20T15:18:09,691   Created temporary directory: /tmp/pip-wheel-rclyqr_9
2020-09-20T15:18:09,692   Building wheel for photon-ptm (setup.py): started
2020-09-20T15:18:09,693   Destination directory: /tmp/pip-wheel-rclyqr_9
2020-09-20T15:18:09,694   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-8ao4x7yq/photon-ptm/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-8ao4x7yq/photon-ptm/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-rclyqr_9
2020-09-20T15:18:11,914   running bdist_wheel
2020-09-20T15:18:11,928   running build
2020-09-20T15:18:11,929   running build_py
2020-09-20T15:18:12,264   creating build
2020-09-20T15:18:12,265   creating build/lib
2020-09-20T15:18:12,266   creating build/lib/phos
2020-09-20T15:18:12,269   copying phos/version.py -> build/lib/phos
2020-09-20T15:18:12,273   copying phos/app.py -> build/lib/phos
2020-09-20T15:18:12,278   copying phos/__init__.py -> build/lib/phos
2020-09-20T15:18:12,282   copying phos/defaults.py -> build/lib/phos
2020-09-20T15:18:12,288   copying phos/pipeline.py -> build/lib/phos
2020-09-20T15:18:12,297   creating build/lib/phos/algo
2020-09-20T15:18:12,300   copying phos/algo/anat.py -> build/lib/phos/algo
2020-09-20T15:18:12,307   copying phos/algo/subnetwork.py -> build/lib/phos/algo
2020-09-20T15:18:12,313   copying phos/algo/__init__.py -> build/lib/phos/algo
2020-09-20T15:18:12,318   copying phos/algo/activity.py -> build/lib/phos/algo
2020-09-20T15:18:12,324   copying phos/algo/logistic_regression.py -> build/lib/phos/algo
2020-09-20T15:18:12,330   copying phos/algo/functional_sites.py -> build/lib/phos/algo
2020-09-20T15:18:12,362   creating build/lib/phos/util
2020-09-20T15:18:12,365   copying phos/util/mapping.py -> build/lib/phos/util
2020-09-20T15:18:12,371   copying phos/util/io.py -> build/lib/phos/util
2020-09-20T15:18:12,377   copying phos/util/__init__.py -> build/lib/phos/util
2020-09-20T15:18:12,385   creating build/lib/phos/data
2020-09-20T15:18:12,387   copying phos/data/read.py -> build/lib/phos/data
2020-09-20T15:18:12,393   copying phos/data/__init__.py -> build/lib/phos/data
2020-09-20T15:18:12,397   copying phos/data/silac.py -> build/lib/phos/data
2020-09-20T15:18:12,402   copying phos/data/network.py -> build/lib/phos/data
2020-09-20T15:18:12,406   copying phos/data/functional_sites.py -> build/lib/phos/data
2020-09-20T15:18:12,426   installing to build/bdist.linux-armv7l/wheel
2020-09-20T15:18:12,427   running install
2020-09-20T15:18:12,430   running install_lib
2020-09-20T15:18:12,440   creating build/bdist.linux-armv7l
2020-09-20T15:18:12,440   creating build/bdist.linux-armv7l/wheel
2020-09-20T15:18:12,444   creating build/bdist.linux-armv7l/wheel/phos
2020-09-20T15:18:12,446   copying build/lib/phos/version.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T15:18:12,452   creating build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T15:18:12,453   copying build/lib/phos/algo/anat.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T15:18:12,460   copying build/lib/phos/algo/subnetwork.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T15:18:12,467   copying build/lib/phos/algo/__init__.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T15:18:12,471   copying build/lib/phos/algo/activity.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T15:18:12,477   copying build/lib/phos/algo/logistic_regression.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T15:18:12,483   copying build/lib/phos/algo/functional_sites.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T15:18:12,489   copying build/lib/phos/app.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T15:18:12,495   copying build/lib/phos/__init__.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T15:18:12,500   copying build/lib/phos/defaults.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T15:18:12,507   creating build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T15:18:12,510   copying build/lib/phos/util/mapping.py -> build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T15:18:12,516   copying build/lib/phos/util/io.py -> build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T15:18:12,523   copying build/lib/phos/util/__init__.py -> build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T15:18:12,530   creating build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T15:18:12,533   copying build/lib/phos/data/read.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T15:18:12,539   copying build/lib/phos/data/__init__.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T15:18:12,544   copying build/lib/phos/data/silac.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T15:18:12,550   copying build/lib/phos/data/network.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T15:18:12,556   copying build/lib/phos/data/functional_sites.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T15:18:12,561   copying build/lib/phos/pipeline.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T15:18:12,567   running install_egg_info
2020-09-20T15:18:12,617   running egg_info
2020-09-20T15:18:12,619   writing dependency_links to photon_ptm.egg-info/dependency_links.txt
2020-09-20T15:18:12,622   writing top-level names to photon_ptm.egg-info/top_level.txt
2020-09-20T15:18:12,625   writing requirements to photon_ptm.egg-info/requires.txt
2020-09-20T15:18:12,627   writing photon_ptm.egg-info/PKG-INFO
2020-09-20T15:18:12,643   reading manifest file 'photon_ptm.egg-info/SOURCES.txt'
2020-09-20T15:18:12,647   reading manifest template 'MANIFEST.in'
2020-09-20T15:18:12,656   writing manifest file 'photon_ptm.egg-info/SOURCES.txt'
2020-09-20T15:18:12,659   Copying photon_ptm.egg-info to build/bdist.linux-armv7l/wheel/photon_ptm-0.2.3-py3.5.egg-info
2020-09-20T15:18:12,685   running install_scripts
2020-09-20T15:18:12,924   creating build/bdist.linux-armv7l/wheel/photon_ptm-0.2.3.dist-info/WHEEL
2020-09-20T15:18:13,209   Building wheel for photon-ptm (setup.py): finished with status 'done'
2020-09-20T15:18:13,213   Created wheel for photon-ptm: filename=photon_ptm-0.2.3-py3-none-any.whl size=28771 sha256=61a269d688254b61b8ef2804307f44c074dd6adadd04b3c758887f364f9ba563
2020-09-20T15:18:13,214   Stored in directory: /tmp/pip-ephem-wheel-cache-wd01zs4f/wheels/33/e0/dd/572ef9ca5959577d457902921addc9c950f1422f85b739d93a
2020-09-20T15:18:13,218 Successfully built photon-ptm
2020-09-20T15:18:13,230 Removed build tracker: '/tmp/pip-req-tracker-z4cachy4'