2020-09-20T16:03:24,416 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-09-20T16:03:25,119 Created temporary directory: /tmp/pip-ephem-wheel-cache-0r04rdfo
2020-09-20T16:03:25,124 Created temporary directory: /tmp/pip-req-tracker-jl5oowx0
2020-09-20T16:03:25,125 Initialized build tracking at /tmp/pip-req-tracker-jl5oowx0
2020-09-20T16:03:25,126 Created build tracker: /tmp/pip-req-tracker-jl5oowx0
2020-09-20T16:03:25,126 Entered build tracker: /tmp/pip-req-tracker-jl5oowx0
2020-09-20T16:03:25,127 Created temporary directory: /tmp/pip-wheel-pfk88v21
2020-09-20T16:03:25,145 1 location(s) to search for versions of photon-ptm:
2020-09-20T16:03:25,145 * https://pypi.org/simple/photon-ptm/
2020-09-20T16:03:25,146 Fetching project page and analyzing links: https://pypi.org/simple/photon-ptm/
2020-09-20T16:03:25,148 Getting page https://pypi.org/simple/photon-ptm/
2020-09-20T16:03:25,152 Found index url https://pypi.org/simple
2020-09-20T16:03:25,396   Found link https://files.pythonhosted.org/packages/44/cf/99b2ba3a1532a224b1d2ca58df76cfe5744a4c3d3a10cf34c0bacdae80b0/photon_ptm-0.2.0.tar.gz#sha256=37323b9a6c782de66a11a7e980244e8f5b8f6f499a82970bebcb98e214027022 (from https://pypi.org/simple/photon-ptm/), version: 0.2.0
2020-09-20T16:03:25,397   Found link https://files.pythonhosted.org/packages/b2/cc/033880918ac5e59ca5bb2fea598ba1e85550990df30f370d59eed845804e/photon_ptm-0.2.1.tar.gz#sha256=80fe4807a9032cafcea4ca23944cbd17eb4ff15cf1804bb60b9e46d569cf2259 (from https://pypi.org/simple/photon-ptm/), version: 0.2.1
2020-09-20T16:03:25,398   Found link https://files.pythonhosted.org/packages/e5/9a/ed5a90fc79a4f1e6605715b1fbc14e245f7e616156e767e4fb23f24bcaf1/photon_ptm-0.2.2.tar.gz#sha256=1499710d5b85aacf0e9618a78de253c6836e3baa1714d5c90618b5111da9894f (from https://pypi.org/simple/photon-ptm/), version: 0.2.2
2020-09-20T16:03:25,399   Found link https://files.pythonhosted.org/packages/17/0c/5057a42906201cc00b94490c1b4a305b5745147b67e2ea1f2894e1509c8a/photon_ptm-0.2.3.tar.gz#sha256=6b6a374f66dc2d3d742134bab4b98334066eb14984a90bab9bbf3e066c805c97 (from https://pypi.org/simple/photon-ptm/), version: 0.2.3
2020-09-20T16:03:25,400   Found link https://files.pythonhosted.org/packages/c9/f9/f70f048cb9f62cb34d48ed8d1adaabe39424320b693bcce5a8db105829df/photon_ptm-0.2.4.tar.gz#sha256=72fcf8df33ccf1e27455387422d70883fd9cf1324fda3f1a46dc03b1de51c032 (from https://pypi.org/simple/photon-ptm/), version: 0.2.4
2020-09-20T16:03:25,401   Found link https://files.pythonhosted.org/packages/e0/e3/46802b8d193bc76c0a68a536dfe6f425aa64f67b10db79afbb6fab2fc5de/photon_ptm-0.2.5.tar.gz#sha256=7fd86dc30aa20be8d27ef3f9ce66fc8281c0c2b83d206fa892049df298ab92c3 (from https://pypi.org/simple/photon-ptm/), version: 0.2.5
2020-09-20T16:03:25,402   Found link https://files.pythonhosted.org/packages/a6/5c/c35cc366b3437cbf2578889f3fff385d926e7196606a18535835f91ada4a/photon_ptm-0.2.6.tar.gz#sha256=73faafd3e570605545c99a75b1d49a44d915e1442cce20e4a64d38a1e4272b0c (from https://pypi.org/simple/photon-ptm/), version: 0.2.6
2020-09-20T16:03:25,403   Found link https://files.pythonhosted.org/packages/8f/bf/d4bf8497043a39986f7d6b0a7cf58eb0b2402461a1dd70c093a1567bd156/photon_ptm-0.2.7.tar.gz#sha256=09d0790935994fb0da58735ef8cc6b3e71bf67ca019fd0fbf15f21bd9c547eca (from https://pypi.org/simple/photon-ptm/), version: 0.2.7
2020-09-20T16:03:25,403   Found link https://files.pythonhosted.org/packages/49/0b/68bed752a43fd97769e76617c976556b5678dba1a5483d543f3fba148ea1/photon_ptm-0.2.8.tar.gz#sha256=d0cf56ec8204921271db32b1191ca8aa83b231a36d31e6b93705a012a70c27f9 (from https://pypi.org/simple/photon-ptm/), version: 0.2.8
2020-09-20T16:03:25,404   Found link https://files.pythonhosted.org/packages/d3/d1/4ca6e77f2a70985409e46a11321fa3474240d520c64f2dc1fcf09dbab43c/photon_ptm-0.3.0.tar.gz#sha256=df96edc71350622ee5316da2da28e1832a4a8ed2cf03df4860ceaa9f4539fba3 (from https://pypi.org/simple/photon-ptm/), version: 0.3.0
2020-09-20T16:03:25,405   Found link https://files.pythonhosted.org/packages/10/d9/90af00c6f6982471ede984cdead4e7083a2e803dbc4ccecd7cd8703a5175/photon_ptm-0.3.1.tar.gz#sha256=ffbe2381bb1f84a52e6fa82a0cc0afce181ab93c28e4fc587080f4b1a60b0f13 (from https://pypi.org/simple/photon-ptm/), version: 0.3.1
2020-09-20T16:03:25,419 Given no hashes to check 1 links for project 'photon-ptm': discarding no candidates
2020-09-20T16:03:25,420 Using version 0.2.4 (newest of versions: 0.2.4)
2020-09-20T16:03:25,429 Collecting photon-ptm==0.2.4
2020-09-20T16:03:25,434   Created temporary directory: /tmp/pip-unpack-rtbawikv
2020-09-20T16:03:25,526   Downloading photon_ptm-0.2.4.tar.gz (19 kB)
2020-09-20T16:03:25,769   Added photon-ptm==0.2.4 from https://files.pythonhosted.org/packages/c9/f9/f70f048cb9f62cb34d48ed8d1adaabe39424320b693bcce5a8db105829df/photon_ptm-0.2.4.tar.gz#sha256=72fcf8df33ccf1e27455387422d70883fd9cf1324fda3f1a46dc03b1de51c032 to build tracker '/tmp/pip-req-tracker-jl5oowx0'
2020-09-20T16:03:25,771     Running setup.py (path:/tmp/pip-wheel-pfk88v21/photon-ptm/setup.py) egg_info for package photon-ptm
2020-09-20T16:03:25,773     Created temporary directory: /tmp/pip-pip-egg-info-f7z3trq9
2020-09-20T16:03:25,773     Running command python setup.py egg_info
2020-09-20T16:03:27,917     running egg_info
2020-09-20T16:03:27,924     creating /tmp/pip-pip-egg-info-f7z3trq9/photon_ptm.egg-info
2020-09-20T16:03:27,928     writing top-level names to /tmp/pip-pip-egg-info-f7z3trq9/photon_ptm.egg-info/top_level.txt
2020-09-20T16:03:27,931     writing dependency_links to /tmp/pip-pip-egg-info-f7z3trq9/photon_ptm.egg-info/dependency_links.txt
2020-09-20T16:03:27,934     writing /tmp/pip-pip-egg-info-f7z3trq9/photon_ptm.egg-info/PKG-INFO
2020-09-20T16:03:27,940     writing requirements to /tmp/pip-pip-egg-info-f7z3trq9/photon_ptm.egg-info/requires.txt
2020-09-20T16:03:27,944     writing manifest file '/tmp/pip-pip-egg-info-f7z3trq9/photon_ptm.egg-info/SOURCES.txt'
2020-09-20T16:03:28,297     reading manifest file '/tmp/pip-pip-egg-info-f7z3trq9/photon_ptm.egg-info/SOURCES.txt'
2020-09-20T16:03:28,301     reading manifest template 'MANIFEST.in'
2020-09-20T16:03:28,309     writing manifest file '/tmp/pip-pip-egg-info-f7z3trq9/photon_ptm.egg-info/SOURCES.txt'
2020-09-20T16:03:28,445   Source in /tmp/pip-wheel-pfk88v21/photon-ptm has version 0.2.4, which satisfies requirement photon-ptm==0.2.4 from https://files.pythonhosted.org/packages/c9/f9/f70f048cb9f62cb34d48ed8d1adaabe39424320b693bcce5a8db105829df/photon_ptm-0.2.4.tar.gz#sha256=72fcf8df33ccf1e27455387422d70883fd9cf1324fda3f1a46dc03b1de51c032
2020-09-20T16:03:28,447   Removed photon-ptm==0.2.4 from https://files.pythonhosted.org/packages/c9/f9/f70f048cb9f62cb34d48ed8d1adaabe39424320b693bcce5a8db105829df/photon_ptm-0.2.4.tar.gz#sha256=72fcf8df33ccf1e27455387422d70883fd9cf1324fda3f1a46dc03b1de51c032 from build tracker '/tmp/pip-req-tracker-jl5oowx0'
2020-09-20T16:03:28,453 Building wheels for collected packages: photon-ptm
2020-09-20T16:03:28,462   Created temporary directory: /tmp/pip-wheel-w0ipqa21
2020-09-20T16:03:28,463   Building wheel for photon-ptm (setup.py): started
2020-09-20T16:03:28,464   Destination directory: /tmp/pip-wheel-w0ipqa21
2020-09-20T16:03:28,465   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-pfk88v21/photon-ptm/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-pfk88v21/photon-ptm/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-w0ipqa21
2020-09-20T16:03:30,642   running bdist_wheel
2020-09-20T16:03:30,657   running build
2020-09-20T16:03:30,658   running build_py
2020-09-20T16:03:30,991   creating build
2020-09-20T16:03:30,992   creating build/lib
2020-09-20T16:03:30,994   creating build/lib/phos
2020-09-20T16:03:30,998   copying phos/defaults.py -> build/lib/phos
2020-09-20T16:03:31,004   copying phos/pipeline.py -> build/lib/phos
2020-09-20T16:03:31,009   copying phos/version.py -> build/lib/phos
2020-09-20T16:03:31,013   copying phos/app.py -> build/lib/phos
2020-09-20T16:03:31,019   copying phos/__init__.py -> build/lib/phos
2020-09-20T16:03:31,027   creating build/lib/phos/data
2020-09-20T16:03:31,030   copying phos/data/network.py -> build/lib/phos/data
2020-09-20T16:03:31,036   copying phos/data/silac.py -> build/lib/phos/data
2020-09-20T16:03:31,042   copying phos/data/functional_sites.py -> build/lib/phos/data
2020-09-20T16:03:31,048   copying phos/data/read.py -> build/lib/phos/data
2020-09-20T16:03:31,053   copying phos/data/__init__.py -> build/lib/phos/data
2020-09-20T16:03:31,062   creating build/lib/phos/algo
2020-09-20T16:03:31,065   copying phos/algo/anat.py -> build/lib/phos/algo
2020-09-20T16:03:31,073   copying phos/algo/functional_sites.py -> build/lib/phos/algo
2020-09-20T16:03:31,079   copying phos/algo/logistic_regression.py -> build/lib/phos/algo
2020-09-20T16:03:31,085   copying phos/algo/subnetwork.py -> build/lib/phos/algo
2020-09-20T16:03:31,092   copying phos/algo/activity.py -> build/lib/phos/algo
2020-09-20T16:03:31,097   copying phos/algo/__init__.py -> build/lib/phos/algo
2020-09-20T16:03:31,104   creating build/lib/phos/util
2020-09-20T16:03:31,107   copying phos/util/io.py -> build/lib/phos/util
2020-09-20T16:03:31,114   copying phos/util/mapping.py -> build/lib/phos/util
2020-09-20T16:03:31,119   copying phos/util/__init__.py -> build/lib/phos/util
2020-09-20T16:03:31,142   installing to build/bdist.linux-armv7l/wheel
2020-09-20T16:03:31,143   running install
2020-09-20T16:03:31,145   running install_lib
2020-09-20T16:03:31,152   creating build/bdist.linux-armv7l
2020-09-20T16:03:31,153   creating build/bdist.linux-armv7l/wheel
2020-09-20T16:03:31,157   creating build/bdist.linux-armv7l/wheel/phos
2020-09-20T16:03:31,159   copying build/lib/phos/defaults.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T16:03:31,165   creating build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T16:03:31,167   copying build/lib/phos/data/network.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T16:03:31,172   copying build/lib/phos/data/silac.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T16:03:31,176   copying build/lib/phos/data/functional_sites.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T16:03:31,181   copying build/lib/phos/data/read.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T16:03:31,186   copying build/lib/phos/data/__init__.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T16:03:31,193   creating build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T16:03:31,196   copying build/lib/phos/algo/anat.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T16:03:31,203   copying build/lib/phos/algo/functional_sites.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T16:03:31,209   copying build/lib/phos/algo/logistic_regression.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T16:03:31,215   copying build/lib/phos/algo/subnetwork.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T16:03:31,222   copying build/lib/phos/algo/activity.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T16:03:31,228   copying build/lib/phos/algo/__init__.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T16:03:31,232   copying build/lib/phos/pipeline.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T16:03:31,240   creating build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T16:03:31,243   copying build/lib/phos/util/io.py -> build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T16:03:31,249   copying build/lib/phos/util/mapping.py -> build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T16:03:31,255   copying build/lib/phos/util/__init__.py -> build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T16:03:31,260   copying build/lib/phos/version.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T16:03:31,266   copying build/lib/phos/app.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T16:03:31,272   copying build/lib/phos/__init__.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T16:03:31,277   running install_egg_info
2020-09-20T16:03:31,323   running egg_info
2020-09-20T16:03:31,324   writing photon_ptm.egg-info/PKG-INFO
2020-09-20T16:03:31,330   writing dependency_links to photon_ptm.egg-info/dependency_links.txt
2020-09-20T16:03:31,333   writing top-level names to photon_ptm.egg-info/top_level.txt
2020-09-20T16:03:31,335   writing requirements to photon_ptm.egg-info/requires.txt
2020-09-20T16:03:31,348   reading manifest file 'photon_ptm.egg-info/SOURCES.txt'
2020-09-20T16:03:31,353   reading manifest template 'MANIFEST.in'
2020-09-20T16:03:31,361   writing manifest file 'photon_ptm.egg-info/SOURCES.txt'
2020-09-20T16:03:31,365   Copying photon_ptm.egg-info to build/bdist.linux-armv7l/wheel/photon_ptm-0.2.4-py3.5.egg-info
2020-09-20T16:03:31,392   running install_scripts
2020-09-20T16:03:31,622   creating build/bdist.linux-armv7l/wheel/photon_ptm-0.2.4.dist-info/WHEEL
2020-09-20T16:03:31,910   Building wheel for photon-ptm (setup.py): finished with status 'done'
2020-09-20T16:03:31,915   Created wheel for photon-ptm: filename=photon_ptm-0.2.4-py3-none-any.whl size=29098 sha256=abf501b2a6ab385867c92c58ac1789bcdb1592c20532faf78899471e9cc6986f
2020-09-20T16:03:31,916   Stored in directory: /tmp/pip-ephem-wheel-cache-0r04rdfo/wheels/85/09/d3/e479f9f5fdd7f5b4848c4b3f9a32960e7d6a4c22eb6cf97d84
2020-09-20T16:03:31,920 Successfully built photon-ptm
2020-09-20T16:03:31,931 Removed build tracker: '/tmp/pip-req-tracker-jl5oowx0'