2020-09-20T16:18:18,460 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-09-20T16:18:19,117 Created temporary directory: /tmp/pip-ephem-wheel-cache-l49dd2ld
2020-09-20T16:18:19,121 Created temporary directory: /tmp/pip-req-tracker-e6g2oc8_
2020-09-20T16:18:19,122 Initialized build tracking at /tmp/pip-req-tracker-e6g2oc8_
2020-09-20T16:18:19,123 Created build tracker: /tmp/pip-req-tracker-e6g2oc8_
2020-09-20T16:18:19,123 Entered build tracker: /tmp/pip-req-tracker-e6g2oc8_
2020-09-20T16:18:19,124 Created temporary directory: /tmp/pip-wheel-s_mvned6
2020-09-20T16:18:19,141 1 location(s) to search for versions of photon-ptm:
2020-09-20T16:18:19,141 * https://pypi.org/simple/photon-ptm/
2020-09-20T16:18:19,142 Fetching project page and analyzing links: https://pypi.org/simple/photon-ptm/
2020-09-20T16:18:19,144 Getting page https://pypi.org/simple/photon-ptm/
2020-09-20T16:18:19,148 Found index url https://pypi.org/simple
2020-09-20T16:18:19,393   Found link https://files.pythonhosted.org/packages/44/cf/99b2ba3a1532a224b1d2ca58df76cfe5744a4c3d3a10cf34c0bacdae80b0/photon_ptm-0.2.0.tar.gz#sha256=37323b9a6c782de66a11a7e980244e8f5b8f6f499a82970bebcb98e214027022 (from https://pypi.org/simple/photon-ptm/), version: 0.2.0
2020-09-20T16:18:19,394   Found link https://files.pythonhosted.org/packages/b2/cc/033880918ac5e59ca5bb2fea598ba1e85550990df30f370d59eed845804e/photon_ptm-0.2.1.tar.gz#sha256=80fe4807a9032cafcea4ca23944cbd17eb4ff15cf1804bb60b9e46d569cf2259 (from https://pypi.org/simple/photon-ptm/), version: 0.2.1
2020-09-20T16:18:19,395   Found link https://files.pythonhosted.org/packages/e5/9a/ed5a90fc79a4f1e6605715b1fbc14e245f7e616156e767e4fb23f24bcaf1/photon_ptm-0.2.2.tar.gz#sha256=1499710d5b85aacf0e9618a78de253c6836e3baa1714d5c90618b5111da9894f (from https://pypi.org/simple/photon-ptm/), version: 0.2.2
2020-09-20T16:18:19,396   Found link https://files.pythonhosted.org/packages/17/0c/5057a42906201cc00b94490c1b4a305b5745147b67e2ea1f2894e1509c8a/photon_ptm-0.2.3.tar.gz#sha256=6b6a374f66dc2d3d742134bab4b98334066eb14984a90bab9bbf3e066c805c97 (from https://pypi.org/simple/photon-ptm/), version: 0.2.3
2020-09-20T16:18:19,397   Found link https://files.pythonhosted.org/packages/c9/f9/f70f048cb9f62cb34d48ed8d1adaabe39424320b693bcce5a8db105829df/photon_ptm-0.2.4.tar.gz#sha256=72fcf8df33ccf1e27455387422d70883fd9cf1324fda3f1a46dc03b1de51c032 (from https://pypi.org/simple/photon-ptm/), version: 0.2.4
2020-09-20T16:18:19,398   Found link https://files.pythonhosted.org/packages/e0/e3/46802b8d193bc76c0a68a536dfe6f425aa64f67b10db79afbb6fab2fc5de/photon_ptm-0.2.5.tar.gz#sha256=7fd86dc30aa20be8d27ef3f9ce66fc8281c0c2b83d206fa892049df298ab92c3 (from https://pypi.org/simple/photon-ptm/), version: 0.2.5
2020-09-20T16:18:19,398   Found link https://files.pythonhosted.org/packages/a6/5c/c35cc366b3437cbf2578889f3fff385d926e7196606a18535835f91ada4a/photon_ptm-0.2.6.tar.gz#sha256=73faafd3e570605545c99a75b1d49a44d915e1442cce20e4a64d38a1e4272b0c (from https://pypi.org/simple/photon-ptm/), version: 0.2.6
2020-09-20T16:18:19,399   Found link https://files.pythonhosted.org/packages/8f/bf/d4bf8497043a39986f7d6b0a7cf58eb0b2402461a1dd70c093a1567bd156/photon_ptm-0.2.7.tar.gz#sha256=09d0790935994fb0da58735ef8cc6b3e71bf67ca019fd0fbf15f21bd9c547eca (from https://pypi.org/simple/photon-ptm/), version: 0.2.7
2020-09-20T16:18:19,400   Found link https://files.pythonhosted.org/packages/49/0b/68bed752a43fd97769e76617c976556b5678dba1a5483d543f3fba148ea1/photon_ptm-0.2.8.tar.gz#sha256=d0cf56ec8204921271db32b1191ca8aa83b231a36d31e6b93705a012a70c27f9 (from https://pypi.org/simple/photon-ptm/), version: 0.2.8
2020-09-20T16:18:19,401   Found link https://files.pythonhosted.org/packages/d3/d1/4ca6e77f2a70985409e46a11321fa3474240d520c64f2dc1fcf09dbab43c/photon_ptm-0.3.0.tar.gz#sha256=df96edc71350622ee5316da2da28e1832a4a8ed2cf03df4860ceaa9f4539fba3 (from https://pypi.org/simple/photon-ptm/), version: 0.3.0
2020-09-20T16:18:19,402   Found link https://files.pythonhosted.org/packages/10/d9/90af00c6f6982471ede984cdead4e7083a2e803dbc4ccecd7cd8703a5175/photon_ptm-0.3.1.tar.gz#sha256=ffbe2381bb1f84a52e6fa82a0cc0afce181ab93c28e4fc587080f4b1a60b0f13 (from https://pypi.org/simple/photon-ptm/), version: 0.3.1
2020-09-20T16:18:19,415 Given no hashes to check 1 links for project 'photon-ptm': discarding no candidates
2020-09-20T16:18:19,417 Using version 0.2.5 (newest of versions: 0.2.5)
2020-09-20T16:18:19,425 Collecting photon-ptm==0.2.5
2020-09-20T16:18:19,430   Created temporary directory: /tmp/pip-unpack-m0a51m6g
2020-09-20T16:18:19,520   Downloading photon_ptm-0.2.5.tar.gz (20 kB)
2020-09-20T16:18:19,708   Added photon-ptm==0.2.5 from https://files.pythonhosted.org/packages/e0/e3/46802b8d193bc76c0a68a536dfe6f425aa64f67b10db79afbb6fab2fc5de/photon_ptm-0.2.5.tar.gz#sha256=7fd86dc30aa20be8d27ef3f9ce66fc8281c0c2b83d206fa892049df298ab92c3 to build tracker '/tmp/pip-req-tracker-e6g2oc8_'
2020-09-20T16:18:19,710     Running setup.py (path:/tmp/pip-wheel-s_mvned6/photon-ptm/setup.py) egg_info for package photon-ptm
2020-09-20T16:18:19,712     Created temporary directory: /tmp/pip-pip-egg-info-s71rtsfc
2020-09-20T16:18:19,713     Running command python setup.py egg_info
2020-09-20T16:18:21,952     running egg_info
2020-09-20T16:18:21,958     creating /tmp/pip-pip-egg-info-s71rtsfc/photon_ptm.egg-info
2020-09-20T16:18:21,960     writing dependency_links to /tmp/pip-pip-egg-info-s71rtsfc/photon_ptm.egg-info/dependency_links.txt
2020-09-20T16:18:21,963     writing /tmp/pip-pip-egg-info-s71rtsfc/photon_ptm.egg-info/PKG-INFO
2020-09-20T16:18:21,970     writing top-level names to /tmp/pip-pip-egg-info-s71rtsfc/photon_ptm.egg-info/top_level.txt
2020-09-20T16:18:21,973     writing requirements to /tmp/pip-pip-egg-info-s71rtsfc/photon_ptm.egg-info/requires.txt
2020-09-20T16:18:21,977     writing manifest file '/tmp/pip-pip-egg-info-s71rtsfc/photon_ptm.egg-info/SOURCES.txt'
2020-09-20T16:18:22,337     reading manifest file '/tmp/pip-pip-egg-info-s71rtsfc/photon_ptm.egg-info/SOURCES.txt'
2020-09-20T16:18:22,341     reading manifest template 'MANIFEST.in'
2020-09-20T16:18:22,349     writing manifest file '/tmp/pip-pip-egg-info-s71rtsfc/photon_ptm.egg-info/SOURCES.txt'
2020-09-20T16:18:22,486   Source in /tmp/pip-wheel-s_mvned6/photon-ptm has version 0.2.5, which satisfies requirement photon-ptm==0.2.5 from https://files.pythonhosted.org/packages/e0/e3/46802b8d193bc76c0a68a536dfe6f425aa64f67b10db79afbb6fab2fc5de/photon_ptm-0.2.5.tar.gz#sha256=7fd86dc30aa20be8d27ef3f9ce66fc8281c0c2b83d206fa892049df298ab92c3
2020-09-20T16:18:22,488   Removed photon-ptm==0.2.5 from https://files.pythonhosted.org/packages/e0/e3/46802b8d193bc76c0a68a536dfe6f425aa64f67b10db79afbb6fab2fc5de/photon_ptm-0.2.5.tar.gz#sha256=7fd86dc30aa20be8d27ef3f9ce66fc8281c0c2b83d206fa892049df298ab92c3 from build tracker '/tmp/pip-req-tracker-e6g2oc8_'
2020-09-20T16:18:22,494 Building wheels for collected packages: photon-ptm
2020-09-20T16:18:22,504   Created temporary directory: /tmp/pip-wheel-9nk95op7
2020-09-20T16:18:22,505   Building wheel for photon-ptm (setup.py): started
2020-09-20T16:18:22,505   Destination directory: /tmp/pip-wheel-9nk95op7
2020-09-20T16:18:22,506   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-s_mvned6/photon-ptm/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-s_mvned6/photon-ptm/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-9nk95op7
2020-09-20T16:18:24,695   running bdist_wheel
2020-09-20T16:18:24,710   running build
2020-09-20T16:18:24,711   running build_py
2020-09-20T16:18:25,055   creating build
2020-09-20T16:18:25,056   creating build/lib
2020-09-20T16:18:25,058   creating build/lib/phos
2020-09-20T16:18:25,061   copying phos/version.py -> build/lib/phos
2020-09-20T16:18:25,065   copying phos/defaults.py -> build/lib/phos
2020-09-20T16:18:25,069   copying phos/__init__.py -> build/lib/phos
2020-09-20T16:18:25,074   copying phos/app.py -> build/lib/phos
2020-09-20T16:18:25,080   copying phos/pipeline.py -> build/lib/phos
2020-09-20T16:18:25,088   creating build/lib/phos/util
2020-09-20T16:18:25,092   copying phos/util/fdr.py -> build/lib/phos/util
2020-09-20T16:18:25,098   copying phos/util/mapping.py -> build/lib/phos/util
2020-09-20T16:18:25,103   copying phos/util/io.py -> build/lib/phos/util
2020-09-20T16:18:25,107   copying phos/util/__init__.py -> build/lib/phos/util
2020-09-20T16:18:25,112   creating build/lib/phos/data
2020-09-20T16:18:25,115   copying phos/data/network.py -> build/lib/phos/data
2020-09-20T16:18:25,120   copying phos/data/__init__.py -> build/lib/phos/data
2020-09-20T16:18:25,126   copying phos/data/silac.py -> build/lib/phos/data
2020-09-20T16:18:25,132   copying phos/data/read.py -> build/lib/phos/data
2020-09-20T16:18:25,138   copying phos/data/functional_sites.py -> build/lib/phos/data
2020-09-20T16:18:25,145   creating build/lib/phos/algo
2020-09-20T16:18:25,147   copying phos/algo/anat.py -> build/lib/phos/algo
2020-09-20T16:18:25,153   copying phos/algo/__init__.py -> build/lib/phos/algo
2020-09-20T16:18:25,156   copying phos/algo/subnetwork.py -> build/lib/phos/algo
2020-09-20T16:18:25,163   copying phos/algo/logistic_regression.py -> build/lib/phos/algo
2020-09-20T16:18:25,169   copying phos/algo/functional_sites.py -> build/lib/phos/algo
2020-09-20T16:18:25,175   copying phos/algo/activity.py -> build/lib/phos/algo
2020-09-20T16:18:25,193   installing to build/bdist.linux-armv7l/wheel
2020-09-20T16:18:25,194   running install
2020-09-20T16:18:25,195   running install_lib
2020-09-20T16:18:25,204   creating build/bdist.linux-armv7l
2020-09-20T16:18:25,204   creating build/bdist.linux-armv7l/wheel
2020-09-20T16:18:25,208   creating build/bdist.linux-armv7l/wheel/phos
2020-09-20T16:18:25,212   creating build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T16:18:25,214   copying build/lib/phos/util/fdr.py -> build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T16:18:25,219   copying build/lib/phos/util/mapping.py -> build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T16:18:25,224   copying build/lib/phos/util/io.py -> build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T16:18:25,230   copying build/lib/phos/util/__init__.py -> build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T16:18:25,238   creating build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T16:18:25,240   copying build/lib/phos/data/network.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T16:18:25,246   copying build/lib/phos/data/__init__.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T16:18:25,250   copying build/lib/phos/data/silac.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T16:18:25,255   copying build/lib/phos/data/read.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T16:18:25,259   copying build/lib/phos/data/functional_sites.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T16:18:25,264   copying build/lib/phos/version.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T16:18:25,270   copying build/lib/phos/defaults.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T16:18:25,275   copying build/lib/phos/__init__.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T16:18:25,281   copying build/lib/phos/app.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T16:18:25,288   creating build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T16:18:25,290   copying build/lib/phos/algo/anat.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T16:18:25,296   copying build/lib/phos/algo/__init__.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T16:18:25,299   copying build/lib/phos/algo/subnetwork.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T16:18:25,305   copying build/lib/phos/algo/logistic_regression.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T16:18:25,311   copying build/lib/phos/algo/functional_sites.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T16:18:25,317   copying build/lib/phos/algo/activity.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T16:18:25,324   copying build/lib/phos/pipeline.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T16:18:25,329   running install_egg_info
2020-09-20T16:18:25,374   running egg_info
2020-09-20T16:18:25,377   writing dependency_links to photon_ptm.egg-info/dependency_links.txt
2020-09-20T16:18:25,380   writing requirements to photon_ptm.egg-info/requires.txt
2020-09-20T16:18:25,382   writing top-level names to photon_ptm.egg-info/top_level.txt
2020-09-20T16:18:25,385   writing photon_ptm.egg-info/PKG-INFO
2020-09-20T16:18:25,401   reading manifest file 'photon_ptm.egg-info/SOURCES.txt'
2020-09-20T16:18:25,406   reading manifest template 'MANIFEST.in'
2020-09-20T16:18:25,415   writing manifest file 'photon_ptm.egg-info/SOURCES.txt'
2020-09-20T16:18:25,419   Copying photon_ptm.egg-info to build/bdist.linux-armv7l/wheel/photon_ptm-0.2.5-py3.5.egg-info
2020-09-20T16:18:25,448   running install_scripts
2020-09-20T16:18:25,716   creating build/bdist.linux-armv7l/wheel/photon_ptm-0.2.5.dist-info/WHEEL
2020-09-20T16:18:26,000   Building wheel for photon-ptm (setup.py): finished with status 'done'
2020-09-20T16:18:26,005   Created wheel for photon-ptm: filename=photon_ptm-0.2.5-py3-none-any.whl size=29579 sha256=d833aeba788ed71f5bd275931321916db85bbaf68c0794e430e61f9e23b44abb
2020-09-20T16:18:26,006   Stored in directory: /tmp/pip-ephem-wheel-cache-l49dd2ld/wheels/f1/93/2e/33f5c1d8eab5458c733dd414d9c81325b2f5de29537f705cc2
2020-09-20T16:18:26,010 Successfully built photon-ptm
2020-09-20T16:18:26,021 Removed build tracker: '/tmp/pip-req-tracker-e6g2oc8_'