2020-09-20T17:40:04,574 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-09-20T17:40:05,264 Created temporary directory: /tmp/pip-ephem-wheel-cache-jfgx9_xo
2020-09-20T17:40:05,269 Created temporary directory: /tmp/pip-req-tracker-s643qbvd
2020-09-20T17:40:05,269 Initialized build tracking at /tmp/pip-req-tracker-s643qbvd
2020-09-20T17:40:05,270 Created build tracker: /tmp/pip-req-tracker-s643qbvd
2020-09-20T17:40:05,270 Entered build tracker: /tmp/pip-req-tracker-s643qbvd
2020-09-20T17:40:05,272 Created temporary directory: /tmp/pip-wheel-e45r91td
2020-09-20T17:40:05,289 1 location(s) to search for versions of photon-ptm:
2020-09-20T17:40:05,289 * https://pypi.org/simple/photon-ptm/
2020-09-20T17:40:05,289 Fetching project page and analyzing links: https://pypi.org/simple/photon-ptm/
2020-09-20T17:40:05,291 Getting page https://pypi.org/simple/photon-ptm/
2020-09-20T17:40:05,296 Found index url https://pypi.org/simple
2020-09-20T17:40:05,534   Found link https://files.pythonhosted.org/packages/44/cf/99b2ba3a1532a224b1d2ca58df76cfe5744a4c3d3a10cf34c0bacdae80b0/photon_ptm-0.2.0.tar.gz#sha256=37323b9a6c782de66a11a7e980244e8f5b8f6f499a82970bebcb98e214027022 (from https://pypi.org/simple/photon-ptm/), version: 0.2.0
2020-09-20T17:40:05,535   Found link https://files.pythonhosted.org/packages/b2/cc/033880918ac5e59ca5bb2fea598ba1e85550990df30f370d59eed845804e/photon_ptm-0.2.1.tar.gz#sha256=80fe4807a9032cafcea4ca23944cbd17eb4ff15cf1804bb60b9e46d569cf2259 (from https://pypi.org/simple/photon-ptm/), version: 0.2.1
2020-09-20T17:40:05,536   Found link https://files.pythonhosted.org/packages/e5/9a/ed5a90fc79a4f1e6605715b1fbc14e245f7e616156e767e4fb23f24bcaf1/photon_ptm-0.2.2.tar.gz#sha256=1499710d5b85aacf0e9618a78de253c6836e3baa1714d5c90618b5111da9894f (from https://pypi.org/simple/photon-ptm/), version: 0.2.2
2020-09-20T17:40:05,537   Found link https://files.pythonhosted.org/packages/17/0c/5057a42906201cc00b94490c1b4a305b5745147b67e2ea1f2894e1509c8a/photon_ptm-0.2.3.tar.gz#sha256=6b6a374f66dc2d3d742134bab4b98334066eb14984a90bab9bbf3e066c805c97 (from https://pypi.org/simple/photon-ptm/), version: 0.2.3
2020-09-20T17:40:05,538   Found link https://files.pythonhosted.org/packages/c9/f9/f70f048cb9f62cb34d48ed8d1adaabe39424320b693bcce5a8db105829df/photon_ptm-0.2.4.tar.gz#sha256=72fcf8df33ccf1e27455387422d70883fd9cf1324fda3f1a46dc03b1de51c032 (from https://pypi.org/simple/photon-ptm/), version: 0.2.4
2020-09-20T17:40:05,538   Found link https://files.pythonhosted.org/packages/e0/e3/46802b8d193bc76c0a68a536dfe6f425aa64f67b10db79afbb6fab2fc5de/photon_ptm-0.2.5.tar.gz#sha256=7fd86dc30aa20be8d27ef3f9ce66fc8281c0c2b83d206fa892049df298ab92c3 (from https://pypi.org/simple/photon-ptm/), version: 0.2.5
2020-09-20T17:40:05,539   Found link https://files.pythonhosted.org/packages/a6/5c/c35cc366b3437cbf2578889f3fff385d926e7196606a18535835f91ada4a/photon_ptm-0.2.6.tar.gz#sha256=73faafd3e570605545c99a75b1d49a44d915e1442cce20e4a64d38a1e4272b0c (from https://pypi.org/simple/photon-ptm/), version: 0.2.6
2020-09-20T17:40:05,540   Found link https://files.pythonhosted.org/packages/8f/bf/d4bf8497043a39986f7d6b0a7cf58eb0b2402461a1dd70c093a1567bd156/photon_ptm-0.2.7.tar.gz#sha256=09d0790935994fb0da58735ef8cc6b3e71bf67ca019fd0fbf15f21bd9c547eca (from https://pypi.org/simple/photon-ptm/), version: 0.2.7
2020-09-20T17:40:05,541   Found link https://files.pythonhosted.org/packages/49/0b/68bed752a43fd97769e76617c976556b5678dba1a5483d543f3fba148ea1/photon_ptm-0.2.8.tar.gz#sha256=d0cf56ec8204921271db32b1191ca8aa83b231a36d31e6b93705a012a70c27f9 (from https://pypi.org/simple/photon-ptm/), version: 0.2.8
2020-09-20T17:40:05,542   Found link https://files.pythonhosted.org/packages/d3/d1/4ca6e77f2a70985409e46a11321fa3474240d520c64f2dc1fcf09dbab43c/photon_ptm-0.3.0.tar.gz#sha256=df96edc71350622ee5316da2da28e1832a4a8ed2cf03df4860ceaa9f4539fba3 (from https://pypi.org/simple/photon-ptm/), version: 0.3.0
2020-09-20T17:40:05,542   Found link https://files.pythonhosted.org/packages/10/d9/90af00c6f6982471ede984cdead4e7083a2e803dbc4ccecd7cd8703a5175/photon_ptm-0.3.1.tar.gz#sha256=ffbe2381bb1f84a52e6fa82a0cc0afce181ab93c28e4fc587080f4b1a60b0f13 (from https://pypi.org/simple/photon-ptm/), version: 0.3.1
2020-09-20T17:40:05,556 Given no hashes to check 1 links for project 'photon-ptm': discarding no candidates
2020-09-20T17:40:05,557 Using version 0.2.6 (newest of versions: 0.2.6)
2020-09-20T17:40:05,566 Collecting photon-ptm==0.2.6
2020-09-20T17:40:05,571   Created temporary directory: /tmp/pip-unpack-tzoglpnn
2020-09-20T17:40:05,660   Downloading photon_ptm-0.2.6.tar.gz (20 kB)
2020-09-20T17:40:05,863   Added photon-ptm==0.2.6 from https://files.pythonhosted.org/packages/a6/5c/c35cc366b3437cbf2578889f3fff385d926e7196606a18535835f91ada4a/photon_ptm-0.2.6.tar.gz#sha256=73faafd3e570605545c99a75b1d49a44d915e1442cce20e4a64d38a1e4272b0c to build tracker '/tmp/pip-req-tracker-s643qbvd'
2020-09-20T17:40:05,866     Running setup.py (path:/tmp/pip-wheel-e45r91td/photon-ptm/setup.py) egg_info for package photon-ptm
2020-09-20T17:40:05,868     Created temporary directory: /tmp/pip-pip-egg-info-eooh1h87
2020-09-20T17:40:05,870     Running command python setup.py egg_info
2020-09-20T17:40:08,070     running egg_info
2020-09-20T17:40:08,076     creating /tmp/pip-pip-egg-info-eooh1h87/photon_ptm.egg-info
2020-09-20T17:40:08,078     writing top-level names to /tmp/pip-pip-egg-info-eooh1h87/photon_ptm.egg-info/top_level.txt
2020-09-20T17:40:08,081     writing /tmp/pip-pip-egg-info-eooh1h87/photon_ptm.egg-info/PKG-INFO
2020-09-20T17:40:08,087     writing dependency_links to /tmp/pip-pip-egg-info-eooh1h87/photon_ptm.egg-info/dependency_links.txt
2020-09-20T17:40:08,089     writing requirements to /tmp/pip-pip-egg-info-eooh1h87/photon_ptm.egg-info/requires.txt
2020-09-20T17:40:08,096     writing manifest file '/tmp/pip-pip-egg-info-eooh1h87/photon_ptm.egg-info/SOURCES.txt'
2020-09-20T17:40:08,458     reading manifest file '/tmp/pip-pip-egg-info-eooh1h87/photon_ptm.egg-info/SOURCES.txt'
2020-09-20T17:40:08,461     reading manifest template 'MANIFEST.in'
2020-09-20T17:40:08,469     writing manifest file '/tmp/pip-pip-egg-info-eooh1h87/photon_ptm.egg-info/SOURCES.txt'
2020-09-20T17:40:08,604   Source in /tmp/pip-wheel-e45r91td/photon-ptm has version 0.2.6, which satisfies requirement photon-ptm==0.2.6 from https://files.pythonhosted.org/packages/a6/5c/c35cc366b3437cbf2578889f3fff385d926e7196606a18535835f91ada4a/photon_ptm-0.2.6.tar.gz#sha256=73faafd3e570605545c99a75b1d49a44d915e1442cce20e4a64d38a1e4272b0c
2020-09-20T17:40:08,606   Removed photon-ptm==0.2.6 from https://files.pythonhosted.org/packages/a6/5c/c35cc366b3437cbf2578889f3fff385d926e7196606a18535835f91ada4a/photon_ptm-0.2.6.tar.gz#sha256=73faafd3e570605545c99a75b1d49a44d915e1442cce20e4a64d38a1e4272b0c from build tracker '/tmp/pip-req-tracker-s643qbvd'
2020-09-20T17:40:08,612 Building wheels for collected packages: photon-ptm
2020-09-20T17:40:08,622   Created temporary directory: /tmp/pip-wheel-rn2jb6e1
2020-09-20T17:40:08,623   Building wheel for photon-ptm (setup.py): started
2020-09-20T17:40:08,624   Destination directory: /tmp/pip-wheel-rn2jb6e1
2020-09-20T17:40:08,624   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-e45r91td/photon-ptm/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-e45r91td/photon-ptm/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-rn2jb6e1
2020-09-20T17:40:10,881   running bdist_wheel
2020-09-20T17:40:10,895   running build
2020-09-20T17:40:10,896   running build_py
2020-09-20T17:40:11,255   creating build
2020-09-20T17:40:11,256   creating build/lib
2020-09-20T17:40:11,258   creating build/lib/phos
2020-09-20T17:40:11,261   copying phos/__init__.py -> build/lib/phos
2020-09-20T17:40:11,267   copying phos/pipeline.py -> build/lib/phos
2020-09-20T17:40:11,273   copying phos/app.py -> build/lib/phos
2020-09-20T17:40:11,278   copying phos/version.py -> build/lib/phos
2020-09-20T17:40:11,282   copying phos/defaults.py -> build/lib/phos
2020-09-20T17:40:11,287   creating build/lib/phos/util
2020-09-20T17:40:11,289   copying phos/util/__init__.py -> build/lib/phos/util
2020-09-20T17:40:11,294   copying phos/util/mapping.py -> build/lib/phos/util
2020-09-20T17:40:11,298   copying phos/util/fdr.py -> build/lib/phos/util
2020-09-20T17:40:11,303   copying phos/util/io.py -> build/lib/phos/util
2020-09-20T17:40:11,308   creating build/lib/phos/data
2020-09-20T17:40:11,310   copying phos/data/__init__.py -> build/lib/phos/data
2020-09-20T17:40:11,315   copying phos/data/read.py -> build/lib/phos/data
2020-09-20T17:40:11,319   copying phos/data/network.py -> build/lib/phos/data
2020-09-20T17:40:11,323   copying phos/data/functional_sites.py -> build/lib/phos/data
2020-09-20T17:40:11,328   copying phos/data/silac.py -> build/lib/phos/data
2020-09-20T17:40:11,335   creating build/lib/phos/algo
2020-09-20T17:40:11,337   copying phos/algo/__init__.py -> build/lib/phos/algo
2020-09-20T17:40:11,343   copying phos/algo/activity.py -> build/lib/phos/algo
2020-09-20T17:40:11,349   copying phos/algo/subnetwork.py -> build/lib/phos/algo
2020-09-20T17:40:11,355   copying phos/algo/anat.py -> build/lib/phos/algo
2020-09-20T17:40:11,360   copying phos/algo/logistic_regression.py -> build/lib/phos/algo
2020-09-20T17:40:11,365   copying phos/algo/functional_sites.py -> build/lib/phos/algo
2020-09-20T17:40:11,380   installing to build/bdist.linux-armv7l/wheel
2020-09-20T17:40:11,381   running install
2020-09-20T17:40:11,383   running install_lib
2020-09-20T17:40:11,391   creating build/bdist.linux-armv7l
2020-09-20T17:40:11,392   creating build/bdist.linux-armv7l/wheel
2020-09-20T17:40:11,396   creating build/bdist.linux-armv7l/wheel/phos
2020-09-20T17:40:11,398   copying build/lib/phos/__init__.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T17:40:11,402   copying build/lib/phos/pipeline.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T17:40:11,408   creating build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T17:40:11,410   copying build/lib/phos/util/__init__.py -> build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T17:40:11,416   copying build/lib/phos/util/mapping.py -> build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T17:40:11,422   copying build/lib/phos/util/fdr.py -> build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T17:40:11,428   copying build/lib/phos/util/io.py -> build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T17:40:11,435   copying build/lib/phos/app.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T17:40:11,440   copying build/lib/phos/version.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T17:40:11,446   creating build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T17:40:11,448   copying build/lib/phos/data/__init__.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T17:40:11,452   copying build/lib/phos/data/read.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T17:40:11,458   copying build/lib/phos/data/network.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T17:40:11,464   copying build/lib/phos/data/functional_sites.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T17:40:11,470   copying build/lib/phos/data/silac.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T17:40:11,477   creating build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T17:40:11,479   copying build/lib/phos/algo/__init__.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T17:40:11,483   copying build/lib/phos/algo/activity.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T17:40:11,487   copying build/lib/phos/algo/subnetwork.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T17:40:11,492   copying build/lib/phos/algo/anat.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T17:40:11,499   copying build/lib/phos/algo/logistic_regression.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T17:40:11,505   copying build/lib/phos/algo/functional_sites.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T17:40:11,511   copying build/lib/phos/defaults.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T17:40:11,516   running install_egg_info
2020-09-20T17:40:11,562   running egg_info
2020-09-20T17:40:11,563   writing dependency_links to photon_ptm.egg-info/dependency_links.txt
2020-09-20T17:40:11,567   writing top-level names to photon_ptm.egg-info/top_level.txt
2020-09-20T17:40:11,569   writing requirements to photon_ptm.egg-info/requires.txt
2020-09-20T17:40:11,572   writing photon_ptm.egg-info/PKG-INFO
2020-09-20T17:40:11,589   reading manifest file 'photon_ptm.egg-info/SOURCES.txt'
2020-09-20T17:40:11,594   reading manifest template 'MANIFEST.in'
2020-09-20T17:40:11,603   writing manifest file 'photon_ptm.egg-info/SOURCES.txt'
2020-09-20T17:40:11,607   Copying photon_ptm.egg-info to build/bdist.linux-armv7l/wheel/photon_ptm-0.2.6-py3.5.egg-info
2020-09-20T17:40:11,638   running install_scripts
2020-09-20T17:40:11,869   creating build/bdist.linux-armv7l/wheel/photon_ptm-0.2.6.dist-info/WHEEL
2020-09-20T17:40:12,156   Building wheel for photon-ptm (setup.py): finished with status 'done'
2020-09-20T17:40:12,160   Created wheel for photon-ptm: filename=photon_ptm-0.2.6-py3-none-any.whl size=29808 sha256=c814e9f318bfbd98290f594c014e2fa30510653c2ed15a002c544dc8430c6508
2020-09-20T17:40:12,161   Stored in directory: /tmp/pip-ephem-wheel-cache-jfgx9_xo/wheels/5f/c0/77/424d6bd9687c63fb525e988a534bc7cb92eef0c077197394ac
2020-09-20T17:40:12,165 Successfully built photon-ptm
2020-09-20T17:40:12,178 Removed build tracker: '/tmp/pip-req-tracker-s643qbvd'