2020-09-20T17:40:53,364 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-09-20T17:40:54,065 Created temporary directory: /tmp/pip-ephem-wheel-cache-ksnjrg6k
2020-09-20T17:40:54,070 Created temporary directory: /tmp/pip-req-tracker-kvftfio4
2020-09-20T17:40:54,070 Initialized build tracking at /tmp/pip-req-tracker-kvftfio4
2020-09-20T17:40:54,071 Created build tracker: /tmp/pip-req-tracker-kvftfio4
2020-09-20T17:40:54,071 Entered build tracker: /tmp/pip-req-tracker-kvftfio4
2020-09-20T17:40:54,073 Created temporary directory: /tmp/pip-wheel-pkm77qer
2020-09-20T17:40:54,092 1 location(s) to search for versions of photon-ptm:
2020-09-20T17:40:54,092 * https://pypi.org/simple/photon-ptm/
2020-09-20T17:40:54,093 Fetching project page and analyzing links: https://pypi.org/simple/photon-ptm/
2020-09-20T17:40:54,095 Getting page https://pypi.org/simple/photon-ptm/
2020-09-20T17:40:54,099 Found index url https://pypi.org/simple
2020-09-20T17:40:54,345   Found link https://files.pythonhosted.org/packages/44/cf/99b2ba3a1532a224b1d2ca58df76cfe5744a4c3d3a10cf34c0bacdae80b0/photon_ptm-0.2.0.tar.gz#sha256=37323b9a6c782de66a11a7e980244e8f5b8f6f499a82970bebcb98e214027022 (from https://pypi.org/simple/photon-ptm/), version: 0.2.0
2020-09-20T17:40:54,346   Found link https://files.pythonhosted.org/packages/b2/cc/033880918ac5e59ca5bb2fea598ba1e85550990df30f370d59eed845804e/photon_ptm-0.2.1.tar.gz#sha256=80fe4807a9032cafcea4ca23944cbd17eb4ff15cf1804bb60b9e46d569cf2259 (from https://pypi.org/simple/photon-ptm/), version: 0.2.1
2020-09-20T17:40:54,347   Found link https://files.pythonhosted.org/packages/e5/9a/ed5a90fc79a4f1e6605715b1fbc14e245f7e616156e767e4fb23f24bcaf1/photon_ptm-0.2.2.tar.gz#sha256=1499710d5b85aacf0e9618a78de253c6836e3baa1714d5c90618b5111da9894f (from https://pypi.org/simple/photon-ptm/), version: 0.2.2
2020-09-20T17:40:54,348   Found link https://files.pythonhosted.org/packages/17/0c/5057a42906201cc00b94490c1b4a305b5745147b67e2ea1f2894e1509c8a/photon_ptm-0.2.3.tar.gz#sha256=6b6a374f66dc2d3d742134bab4b98334066eb14984a90bab9bbf3e066c805c97 (from https://pypi.org/simple/photon-ptm/), version: 0.2.3
2020-09-20T17:40:54,349   Found link https://files.pythonhosted.org/packages/c9/f9/f70f048cb9f62cb34d48ed8d1adaabe39424320b693bcce5a8db105829df/photon_ptm-0.2.4.tar.gz#sha256=72fcf8df33ccf1e27455387422d70883fd9cf1324fda3f1a46dc03b1de51c032 (from https://pypi.org/simple/photon-ptm/), version: 0.2.4
2020-09-20T17:40:54,350   Found link https://files.pythonhosted.org/packages/e0/e3/46802b8d193bc76c0a68a536dfe6f425aa64f67b10db79afbb6fab2fc5de/photon_ptm-0.2.5.tar.gz#sha256=7fd86dc30aa20be8d27ef3f9ce66fc8281c0c2b83d206fa892049df298ab92c3 (from https://pypi.org/simple/photon-ptm/), version: 0.2.5
2020-09-20T17:40:54,351   Found link https://files.pythonhosted.org/packages/a6/5c/c35cc366b3437cbf2578889f3fff385d926e7196606a18535835f91ada4a/photon_ptm-0.2.6.tar.gz#sha256=73faafd3e570605545c99a75b1d49a44d915e1442cce20e4a64d38a1e4272b0c (from https://pypi.org/simple/photon-ptm/), version: 0.2.6
2020-09-20T17:40:54,352   Found link https://files.pythonhosted.org/packages/8f/bf/d4bf8497043a39986f7d6b0a7cf58eb0b2402461a1dd70c093a1567bd156/photon_ptm-0.2.7.tar.gz#sha256=09d0790935994fb0da58735ef8cc6b3e71bf67ca019fd0fbf15f21bd9c547eca (from https://pypi.org/simple/photon-ptm/), version: 0.2.7
2020-09-20T17:40:54,353   Found link https://files.pythonhosted.org/packages/49/0b/68bed752a43fd97769e76617c976556b5678dba1a5483d543f3fba148ea1/photon_ptm-0.2.8.tar.gz#sha256=d0cf56ec8204921271db32b1191ca8aa83b231a36d31e6b93705a012a70c27f9 (from https://pypi.org/simple/photon-ptm/), version: 0.2.8
2020-09-20T17:40:54,353   Found link https://files.pythonhosted.org/packages/d3/d1/4ca6e77f2a70985409e46a11321fa3474240d520c64f2dc1fcf09dbab43c/photon_ptm-0.3.0.tar.gz#sha256=df96edc71350622ee5316da2da28e1832a4a8ed2cf03df4860ceaa9f4539fba3 (from https://pypi.org/simple/photon-ptm/), version: 0.3.0
2020-09-20T17:40:54,354   Found link https://files.pythonhosted.org/packages/10/d9/90af00c6f6982471ede984cdead4e7083a2e803dbc4ccecd7cd8703a5175/photon_ptm-0.3.1.tar.gz#sha256=ffbe2381bb1f84a52e6fa82a0cc0afce181ab93c28e4fc587080f4b1a60b0f13 (from https://pypi.org/simple/photon-ptm/), version: 0.3.1
2020-09-20T17:40:54,368 Given no hashes to check 1 links for project 'photon-ptm': discarding no candidates
2020-09-20T17:40:54,370 Using version 0.2.7 (newest of versions: 0.2.7)
2020-09-20T17:40:54,378 Collecting photon-ptm==0.2.7
2020-09-20T17:40:54,383   Created temporary directory: /tmp/pip-unpack-one_0bx1
2020-09-20T17:40:54,503   Downloading photon_ptm-0.2.7.tar.gz (20 kB)
2020-09-20T17:40:54,710   Added photon-ptm==0.2.7 from https://files.pythonhosted.org/packages/8f/bf/d4bf8497043a39986f7d6b0a7cf58eb0b2402461a1dd70c093a1567bd156/photon_ptm-0.2.7.tar.gz#sha256=09d0790935994fb0da58735ef8cc6b3e71bf67ca019fd0fbf15f21bd9c547eca to build tracker '/tmp/pip-req-tracker-kvftfio4'
2020-09-20T17:40:54,712     Running setup.py (path:/tmp/pip-wheel-pkm77qer/photon-ptm/setup.py) egg_info for package photon-ptm
2020-09-20T17:40:54,714     Created temporary directory: /tmp/pip-pip-egg-info-mn3t8shz
2020-09-20T17:40:54,715     Running command python setup.py egg_info
2020-09-20T17:40:56,895     running egg_info
2020-09-20T17:40:56,901     creating /tmp/pip-pip-egg-info-mn3t8shz/photon_ptm.egg-info
2020-09-20T17:40:56,905     writing requirements to /tmp/pip-pip-egg-info-mn3t8shz/photon_ptm.egg-info/requires.txt
2020-09-20T17:40:56,908     writing /tmp/pip-pip-egg-info-mn3t8shz/photon_ptm.egg-info/PKG-INFO
2020-09-20T17:40:56,914     writing dependency_links to /tmp/pip-pip-egg-info-mn3t8shz/photon_ptm.egg-info/dependency_links.txt
2020-09-20T17:40:56,916     writing top-level names to /tmp/pip-pip-egg-info-mn3t8shz/photon_ptm.egg-info/top_level.txt
2020-09-20T17:40:56,920     writing manifest file '/tmp/pip-pip-egg-info-mn3t8shz/photon_ptm.egg-info/SOURCES.txt'
2020-09-20T17:40:57,285     reading manifest file '/tmp/pip-pip-egg-info-mn3t8shz/photon_ptm.egg-info/SOURCES.txt'
2020-09-20T17:40:57,288     reading manifest template 'MANIFEST.in'
2020-09-20T17:40:57,296     writing manifest file '/tmp/pip-pip-egg-info-mn3t8shz/photon_ptm.egg-info/SOURCES.txt'
2020-09-20T17:40:57,432   Source in /tmp/pip-wheel-pkm77qer/photon-ptm has version 0.2.7, which satisfies requirement photon-ptm==0.2.7 from https://files.pythonhosted.org/packages/8f/bf/d4bf8497043a39986f7d6b0a7cf58eb0b2402461a1dd70c093a1567bd156/photon_ptm-0.2.7.tar.gz#sha256=09d0790935994fb0da58735ef8cc6b3e71bf67ca019fd0fbf15f21bd9c547eca
2020-09-20T17:40:57,434   Removed photon-ptm==0.2.7 from https://files.pythonhosted.org/packages/8f/bf/d4bf8497043a39986f7d6b0a7cf58eb0b2402461a1dd70c093a1567bd156/photon_ptm-0.2.7.tar.gz#sha256=09d0790935994fb0da58735ef8cc6b3e71bf67ca019fd0fbf15f21bd9c547eca from build tracker '/tmp/pip-req-tracker-kvftfio4'
2020-09-20T17:40:57,440 Building wheels for collected packages: photon-ptm
2020-09-20T17:40:57,449   Created temporary directory: /tmp/pip-wheel-oy8wy6_k
2020-09-20T17:40:57,450   Building wheel for photon-ptm (setup.py): started
2020-09-20T17:40:57,451   Destination directory: /tmp/pip-wheel-oy8wy6_k
2020-09-20T17:40:57,451   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-pkm77qer/photon-ptm/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-pkm77qer/photon-ptm/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-oy8wy6_k
2020-09-20T17:40:59,689   running bdist_wheel
2020-09-20T17:40:59,704   running build
2020-09-20T17:40:59,705   running build_py
2020-09-20T17:41:00,043   creating build
2020-09-20T17:41:00,044   creating build/lib
2020-09-20T17:41:00,046   creating build/lib/phos
2020-09-20T17:41:00,049   copying phos/app.py -> build/lib/phos
2020-09-20T17:41:00,054   copying phos/pipeline.py -> build/lib/phos
2020-09-20T17:41:00,059   copying phos/version.py -> build/lib/phos
2020-09-20T17:41:00,063   copying phos/defaults.py -> build/lib/phos
2020-09-20T17:41:00,067   copying phos/__init__.py -> build/lib/phos
2020-09-20T17:41:00,075   creating build/lib/phos/algo
2020-09-20T17:41:00,078   copying phos/algo/logistic_regression.py -> build/lib/phos/algo
2020-09-20T17:41:00,084   copying phos/algo/activity.py -> build/lib/phos/algo
2020-09-20T17:41:00,090   copying phos/algo/subnetwork.py -> build/lib/phos/algo
2020-09-20T17:41:00,096   copying phos/algo/functional_sites.py -> build/lib/phos/algo
2020-09-20T17:41:00,101   copying phos/algo/anat.py -> build/lib/phos/algo
2020-09-20T17:41:00,106   copying phos/algo/__init__.py -> build/lib/phos/algo
2020-09-20T17:41:00,111   creating build/lib/phos/data
2020-09-20T17:41:00,114   copying phos/data/silac.py -> build/lib/phos/data
2020-09-20T17:41:00,120   copying phos/data/functional_sites.py -> build/lib/phos/data
2020-09-20T17:41:00,126   copying phos/data/network.py -> build/lib/phos/data
2020-09-20T17:41:00,132   copying phos/data/read.py -> build/lib/phos/data
2020-09-20T17:41:00,138   copying phos/data/__init__.py -> build/lib/phos/data
2020-09-20T17:41:00,147   creating build/lib/phos/util
2020-09-20T17:41:00,150   copying phos/util/mapping.py -> build/lib/phos/util
2020-09-20T17:41:00,157   copying phos/util/fdr.py -> build/lib/phos/util
2020-09-20T17:41:00,162   copying phos/util/__init__.py -> build/lib/phos/util
2020-09-20T17:41:00,168   copying phos/util/io.py -> build/lib/phos/util
2020-09-20T17:41:00,185   installing to build/bdist.linux-armv7l/wheel
2020-09-20T17:41:00,186   running install
2020-09-20T17:41:00,188   running install_lib
2020-09-20T17:41:00,196   creating build/bdist.linux-armv7l
2020-09-20T17:41:00,197   creating build/bdist.linux-armv7l/wheel
2020-09-20T17:41:00,201   creating build/bdist.linux-armv7l/wheel/phos
2020-09-20T17:41:00,204   copying build/lib/phos/app.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T17:41:00,209   copying build/lib/phos/pipeline.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T17:41:00,216   creating build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T17:41:00,219   copying build/lib/phos/algo/logistic_regression.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T17:41:00,225   copying build/lib/phos/algo/activity.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T17:41:00,232   copying build/lib/phos/algo/subnetwork.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T17:41:00,238   copying build/lib/phos/algo/functional_sites.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T17:41:00,243   copying build/lib/phos/algo/anat.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T17:41:00,249   copying build/lib/phos/algo/__init__.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T17:41:00,253   creating build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T17:41:00,255   copying build/lib/phos/data/silac.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T17:41:00,263   copying build/lib/phos/data/functional_sites.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T17:41:00,270   copying build/lib/phos/data/network.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T17:41:00,277   copying build/lib/phos/data/read.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T17:41:00,283   copying build/lib/phos/data/__init__.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T17:41:00,288   copying build/lib/phos/version.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T17:41:00,293   copying build/lib/phos/defaults.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T17:41:00,299   copying build/lib/phos/__init__.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T17:41:00,309   creating build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T17:41:00,312   copying build/lib/phos/util/mapping.py -> build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T17:41:00,319   copying build/lib/phos/util/fdr.py -> build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T17:41:00,323   copying build/lib/phos/util/__init__.py -> build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T17:41:00,329   copying build/lib/phos/util/io.py -> build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T17:41:00,333   running install_egg_info
2020-09-20T17:41:00,381   running egg_info
2020-09-20T17:41:00,382   writing top-level names to photon_ptm.egg-info/top_level.txt
2020-09-20T17:41:00,385   writing requirements to photon_ptm.egg-info/requires.txt
2020-09-20T17:41:00,389   writing photon_ptm.egg-info/PKG-INFO
2020-09-20T17:41:00,396   writing dependency_links to photon_ptm.egg-info/dependency_links.txt
2020-09-20T17:41:00,411   reading manifest file 'photon_ptm.egg-info/SOURCES.txt'
2020-09-20T17:41:00,416   reading manifest template 'MANIFEST.in'
2020-09-20T17:41:00,425   writing manifest file 'photon_ptm.egg-info/SOURCES.txt'
2020-09-20T17:41:00,429   Copying photon_ptm.egg-info to build/bdist.linux-armv7l/wheel/photon_ptm-0.2.7-py3.5.egg-info
2020-09-20T17:41:00,459   running install_scripts
2020-09-20T17:41:00,690   creating build/bdist.linux-armv7l/wheel/photon_ptm-0.2.7.dist-info/WHEEL
2020-09-20T17:41:00,983   Building wheel for photon-ptm (setup.py): finished with status 'done'
2020-09-20T17:41:00,987   Created wheel for photon-ptm: filename=photon_ptm-0.2.7-py3-none-any.whl size=30257 sha256=f5c42e0ca381e82ac8795e61fd55f6d77f2ffc310978c64e0a2547fde607ff88
2020-09-20T17:41:00,988   Stored in directory: /tmp/pip-ephem-wheel-cache-ksnjrg6k/wheels/b0/9e/fb/98044447c65c9e9c1ba29b7a880281a59d47550abdfe63ebe4
2020-09-20T17:41:00,992 Successfully built photon-ptm
2020-09-20T17:41:01,004 Removed build tracker: '/tmp/pip-req-tracker-kvftfio4'