2020-09-20T17:42:41,798 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-09-20T17:42:42,503 Created temporary directory: /tmp/pip-ephem-wheel-cache-jrnp3sim
2020-09-20T17:42:42,508 Created temporary directory: /tmp/pip-req-tracker-ywefsf2o
2020-09-20T17:42:42,509 Initialized build tracking at /tmp/pip-req-tracker-ywefsf2o
2020-09-20T17:42:42,509 Created build tracker: /tmp/pip-req-tracker-ywefsf2o
2020-09-20T17:42:42,510 Entered build tracker: /tmp/pip-req-tracker-ywefsf2o
2020-09-20T17:42:42,511 Created temporary directory: /tmp/pip-wheel-5yozv4ev
2020-09-20T17:42:42,528 1 location(s) to search for versions of photon-ptm:
2020-09-20T17:42:42,528 * https://pypi.org/simple/photon-ptm/
2020-09-20T17:42:42,529 Fetching project page and analyzing links: https://pypi.org/simple/photon-ptm/
2020-09-20T17:42:42,531 Getting page https://pypi.org/simple/photon-ptm/
2020-09-20T17:42:42,535 Found index url https://pypi.org/simple
2020-09-20T17:42:42,775   Found link https://files.pythonhosted.org/packages/44/cf/99b2ba3a1532a224b1d2ca58df76cfe5744a4c3d3a10cf34c0bacdae80b0/photon_ptm-0.2.0.tar.gz#sha256=37323b9a6c782de66a11a7e980244e8f5b8f6f499a82970bebcb98e214027022 (from https://pypi.org/simple/photon-ptm/), version: 0.2.0
2020-09-20T17:42:42,776   Found link https://files.pythonhosted.org/packages/b2/cc/033880918ac5e59ca5bb2fea598ba1e85550990df30f370d59eed845804e/photon_ptm-0.2.1.tar.gz#sha256=80fe4807a9032cafcea4ca23944cbd17eb4ff15cf1804bb60b9e46d569cf2259 (from https://pypi.org/simple/photon-ptm/), version: 0.2.1
2020-09-20T17:42:42,777   Found link https://files.pythonhosted.org/packages/e5/9a/ed5a90fc79a4f1e6605715b1fbc14e245f7e616156e767e4fb23f24bcaf1/photon_ptm-0.2.2.tar.gz#sha256=1499710d5b85aacf0e9618a78de253c6836e3baa1714d5c90618b5111da9894f (from https://pypi.org/simple/photon-ptm/), version: 0.2.2
2020-09-20T17:42:42,778   Found link https://files.pythonhosted.org/packages/17/0c/5057a42906201cc00b94490c1b4a305b5745147b67e2ea1f2894e1509c8a/photon_ptm-0.2.3.tar.gz#sha256=6b6a374f66dc2d3d742134bab4b98334066eb14984a90bab9bbf3e066c805c97 (from https://pypi.org/simple/photon-ptm/), version: 0.2.3
2020-09-20T17:42:42,779   Found link https://files.pythonhosted.org/packages/c9/f9/f70f048cb9f62cb34d48ed8d1adaabe39424320b693bcce5a8db105829df/photon_ptm-0.2.4.tar.gz#sha256=72fcf8df33ccf1e27455387422d70883fd9cf1324fda3f1a46dc03b1de51c032 (from https://pypi.org/simple/photon-ptm/), version: 0.2.4
2020-09-20T17:42:42,780   Found link https://files.pythonhosted.org/packages/e0/e3/46802b8d193bc76c0a68a536dfe6f425aa64f67b10db79afbb6fab2fc5de/photon_ptm-0.2.5.tar.gz#sha256=7fd86dc30aa20be8d27ef3f9ce66fc8281c0c2b83d206fa892049df298ab92c3 (from https://pypi.org/simple/photon-ptm/), version: 0.2.5
2020-09-20T17:42:42,781   Found link https://files.pythonhosted.org/packages/a6/5c/c35cc366b3437cbf2578889f3fff385d926e7196606a18535835f91ada4a/photon_ptm-0.2.6.tar.gz#sha256=73faafd3e570605545c99a75b1d49a44d915e1442cce20e4a64d38a1e4272b0c (from https://pypi.org/simple/photon-ptm/), version: 0.2.6
2020-09-20T17:42:42,781   Found link https://files.pythonhosted.org/packages/8f/bf/d4bf8497043a39986f7d6b0a7cf58eb0b2402461a1dd70c093a1567bd156/photon_ptm-0.2.7.tar.gz#sha256=09d0790935994fb0da58735ef8cc6b3e71bf67ca019fd0fbf15f21bd9c547eca (from https://pypi.org/simple/photon-ptm/), version: 0.2.7
2020-09-20T17:42:42,782   Found link https://files.pythonhosted.org/packages/49/0b/68bed752a43fd97769e76617c976556b5678dba1a5483d543f3fba148ea1/photon_ptm-0.2.8.tar.gz#sha256=d0cf56ec8204921271db32b1191ca8aa83b231a36d31e6b93705a012a70c27f9 (from https://pypi.org/simple/photon-ptm/), version: 0.2.8
2020-09-20T17:42:42,783   Found link https://files.pythonhosted.org/packages/d3/d1/4ca6e77f2a70985409e46a11321fa3474240d520c64f2dc1fcf09dbab43c/photon_ptm-0.3.0.tar.gz#sha256=df96edc71350622ee5316da2da28e1832a4a8ed2cf03df4860ceaa9f4539fba3 (from https://pypi.org/simple/photon-ptm/), version: 0.3.0
2020-09-20T17:42:42,784   Found link https://files.pythonhosted.org/packages/10/d9/90af00c6f6982471ede984cdead4e7083a2e803dbc4ccecd7cd8703a5175/photon_ptm-0.3.1.tar.gz#sha256=ffbe2381bb1f84a52e6fa82a0cc0afce181ab93c28e4fc587080f4b1a60b0f13 (from https://pypi.org/simple/photon-ptm/), version: 0.3.1
2020-09-20T17:42:42,797 Given no hashes to check 1 links for project 'photon-ptm': discarding no candidates
2020-09-20T17:42:42,799 Using version 0.2.8 (newest of versions: 0.2.8)
2020-09-20T17:42:42,808 Collecting photon-ptm==0.2.8
2020-09-20T17:42:42,813   Created temporary directory: /tmp/pip-unpack-lu9t5cu2
2020-09-20T17:42:42,908   Downloading photon_ptm-0.2.8.tar.gz (21 kB)
2020-09-20T17:42:43,117   Added photon-ptm==0.2.8 from https://files.pythonhosted.org/packages/49/0b/68bed752a43fd97769e76617c976556b5678dba1a5483d543f3fba148ea1/photon_ptm-0.2.8.tar.gz#sha256=d0cf56ec8204921271db32b1191ca8aa83b231a36d31e6b93705a012a70c27f9 to build tracker '/tmp/pip-req-tracker-ywefsf2o'
2020-09-20T17:42:43,120     Running setup.py (path:/tmp/pip-wheel-5yozv4ev/photon-ptm/setup.py) egg_info for package photon-ptm
2020-09-20T17:42:43,122     Created temporary directory: /tmp/pip-pip-egg-info-oqjiwrjc
2020-09-20T17:42:43,123     Running command python setup.py egg_info
2020-09-20T17:42:45,290     running egg_info
2020-09-20T17:42:45,296     creating /tmp/pip-pip-egg-info-oqjiwrjc/photon_ptm.egg-info
2020-09-20T17:42:45,298     writing dependency_links to /tmp/pip-pip-egg-info-oqjiwrjc/photon_ptm.egg-info/dependency_links.txt
2020-09-20T17:42:45,302     writing requirements to /tmp/pip-pip-egg-info-oqjiwrjc/photon_ptm.egg-info/requires.txt
2020-09-20T17:42:45,305     writing top-level names to /tmp/pip-pip-egg-info-oqjiwrjc/photon_ptm.egg-info/top_level.txt
2020-09-20T17:42:45,308     writing /tmp/pip-pip-egg-info-oqjiwrjc/photon_ptm.egg-info/PKG-INFO
2020-09-20T17:42:45,317     writing manifest file '/tmp/pip-pip-egg-info-oqjiwrjc/photon_ptm.egg-info/SOURCES.txt'
2020-09-20T17:42:45,674     reading manifest file '/tmp/pip-pip-egg-info-oqjiwrjc/photon_ptm.egg-info/SOURCES.txt'
2020-09-20T17:42:45,677     reading manifest template 'MANIFEST.in'
2020-09-20T17:42:45,685     writing manifest file '/tmp/pip-pip-egg-info-oqjiwrjc/photon_ptm.egg-info/SOURCES.txt'
2020-09-20T17:42:45,821   Source in /tmp/pip-wheel-5yozv4ev/photon-ptm has version 0.2.8, which satisfies requirement photon-ptm==0.2.8 from https://files.pythonhosted.org/packages/49/0b/68bed752a43fd97769e76617c976556b5678dba1a5483d543f3fba148ea1/photon_ptm-0.2.8.tar.gz#sha256=d0cf56ec8204921271db32b1191ca8aa83b231a36d31e6b93705a012a70c27f9
2020-09-20T17:42:45,823   Removed photon-ptm==0.2.8 from https://files.pythonhosted.org/packages/49/0b/68bed752a43fd97769e76617c976556b5678dba1a5483d543f3fba148ea1/photon_ptm-0.2.8.tar.gz#sha256=d0cf56ec8204921271db32b1191ca8aa83b231a36d31e6b93705a012a70c27f9 from build tracker '/tmp/pip-req-tracker-ywefsf2o'
2020-09-20T17:42:45,829 Building wheels for collected packages: photon-ptm
2020-09-20T17:42:45,838   Created temporary directory: /tmp/pip-wheel-vf1ictb_
2020-09-20T17:42:45,839   Building wheel for photon-ptm (setup.py): started
2020-09-20T17:42:45,840   Destination directory: /tmp/pip-wheel-vf1ictb_
2020-09-20T17:42:45,840   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-5yozv4ev/photon-ptm/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-5yozv4ev/photon-ptm/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-vf1ictb_
2020-09-20T17:42:48,194   running bdist_wheel
2020-09-20T17:42:48,239   running build
2020-09-20T17:42:48,241   running build_py
2020-09-20T17:42:48,587   creating build
2020-09-20T17:42:48,588   creating build/lib
2020-09-20T17:42:48,589   creating build/lib/phos
2020-09-20T17:42:48,594   copying phos/app.py -> build/lib/phos
2020-09-20T17:42:48,600   copying phos/pipeline.py -> build/lib/phos
2020-09-20T17:42:48,607   copying phos/version.py -> build/lib/phos
2020-09-20T17:42:48,612   copying phos/defaults.py -> build/lib/phos
2020-09-20T17:42:48,617   copying phos/__init__.py -> build/lib/phos
2020-09-20T17:42:48,626   creating build/lib/phos/algo
2020-09-20T17:42:48,629   copying phos/algo/logistic_regression.py -> build/lib/phos/algo
2020-09-20T17:42:48,635   copying phos/algo/activity.py -> build/lib/phos/algo
2020-09-20T17:42:48,642   copying phos/algo/subnetwork.py -> build/lib/phos/algo
2020-09-20T17:42:48,648   copying phos/algo/functional_sites.py -> build/lib/phos/algo
2020-09-20T17:42:48,654   copying phos/algo/anat.py -> build/lib/phos/algo
2020-09-20T17:42:48,661   copying phos/algo/__init__.py -> build/lib/phos/algo
2020-09-20T17:42:48,669   creating build/lib/phos/data
2020-09-20T17:42:48,672   copying phos/data/silac.py -> build/lib/phos/data
2020-09-20T17:42:48,678   copying phos/data/functional_sites.py -> build/lib/phos/data
2020-09-20T17:42:48,683   copying phos/data/network.py -> build/lib/phos/data
2020-09-20T17:42:48,688   copying phos/data/read.py -> build/lib/phos/data
2020-09-20T17:42:48,692   copying phos/data/__init__.py -> build/lib/phos/data
2020-09-20T17:42:48,698   creating build/lib/phos/util
2020-09-20T17:42:48,700   copying phos/util/mapping.py -> build/lib/phos/util
2020-09-20T17:42:48,707   copying phos/util/fdr.py -> build/lib/phos/util
2020-09-20T17:42:48,713   copying phos/util/network.py -> build/lib/phos/util
2020-09-20T17:42:48,718   copying phos/util/__init__.py -> build/lib/phos/util
2020-09-20T17:42:48,724   copying phos/util/io.py -> build/lib/phos/util
2020-09-20T17:42:48,746   installing to build/bdist.linux-armv7l/wheel
2020-09-20T17:42:48,747   running install
2020-09-20T17:42:48,749   running install_lib
2020-09-20T17:42:48,756   creating build/bdist.linux-armv7l
2020-09-20T17:42:48,757   creating build/bdist.linux-armv7l/wheel
2020-09-20T17:42:48,761   creating build/bdist.linux-armv7l/wheel/phos
2020-09-20T17:42:48,763   copying build/lib/phos/app.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T17:42:48,768   copying build/lib/phos/pipeline.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T17:42:48,775   creating build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T17:42:48,777   copying build/lib/phos/algo/logistic_regression.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T17:42:48,781   copying build/lib/phos/algo/activity.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T17:42:48,787   copying build/lib/phos/algo/subnetwork.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T17:42:48,794   copying build/lib/phos/algo/functional_sites.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T17:42:48,800   copying build/lib/phos/algo/anat.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T17:42:48,807   copying build/lib/phos/algo/__init__.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T17:42:48,813   creating build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T17:42:48,815   copying build/lib/phos/data/silac.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T17:42:48,822   copying build/lib/phos/data/functional_sites.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T17:42:48,828   copying build/lib/phos/data/network.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T17:42:48,834   copying build/lib/phos/data/read.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T17:42:48,839   copying build/lib/phos/data/__init__.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T17:42:48,845   copying build/lib/phos/version.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T17:42:48,851   copying build/lib/phos/defaults.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T17:42:48,857   copying build/lib/phos/__init__.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T17:42:48,865   creating build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T17:42:48,867   copying build/lib/phos/util/mapping.py -> build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T17:42:48,874   copying build/lib/phos/util/fdr.py -> build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T17:42:48,880   copying build/lib/phos/util/network.py -> build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T17:42:48,885   copying build/lib/phos/util/__init__.py -> build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T17:42:48,891   copying build/lib/phos/util/io.py -> build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T17:42:48,896   running install_egg_info
2020-09-20T17:42:48,943   running egg_info
2020-09-20T17:42:48,945   writing requirements to photon_ptm.egg-info/requires.txt
2020-09-20T17:42:48,947   writing photon_ptm.egg-info/PKG-INFO
2020-09-20T17:42:48,953   writing top-level names to photon_ptm.egg-info/top_level.txt
2020-09-20T17:42:48,956   writing dependency_links to photon_ptm.egg-info/dependency_links.txt
2020-09-20T17:42:48,969   reading manifest file 'photon_ptm.egg-info/SOURCES.txt'
2020-09-20T17:42:48,974   reading manifest template 'MANIFEST.in'
2020-09-20T17:42:48,983   writing manifest file 'photon_ptm.egg-info/SOURCES.txt'
2020-09-20T17:42:48,986   Copying photon_ptm.egg-info to build/bdist.linux-armv7l/wheel/photon_ptm-0.2.8-py3.5.egg-info
2020-09-20T17:42:49,016   running install_scripts
2020-09-20T17:42:49,269   creating build/bdist.linux-armv7l/wheel/photon_ptm-0.2.8.dist-info/WHEEL
2020-09-20T17:42:49,573   Building wheel for photon-ptm (setup.py): finished with status 'done'
2020-09-20T17:42:49,578   Created wheel for photon-ptm: filename=photon_ptm-0.2.8-py3-none-any.whl size=31069 sha256=f65d84cb911b091a0d60e4ece72d45861ebc03bdb762980703a46ca68f1ccd75
2020-09-20T17:42:49,579   Stored in directory: /tmp/pip-ephem-wheel-cache-jrnp3sim/wheels/8e/59/b2/5ce886719b88b3921cf290efe77f64c9ab5eec8a55017418ac
2020-09-20T17:42:49,583 Successfully built photon-ptm
2020-09-20T17:42:49,596 Removed build tracker: '/tmp/pip-req-tracker-ywefsf2o'