2020-09-20T17:54:42,203 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. 2020-09-20T17:54:42,833 Created temporary directory: /tmp/pip-ephem-wheel-cache-xkp5ub5a 2020-09-20T17:54:42,837 Created temporary directory: /tmp/pip-req-tracker-1e6ivnij 2020-09-20T17:54:42,838 Initialized build tracking at /tmp/pip-req-tracker-1e6ivnij 2020-09-20T17:54:42,838 Created build tracker: /tmp/pip-req-tracker-1e6ivnij 2020-09-20T17:54:42,839 Entered build tracker: /tmp/pip-req-tracker-1e6ivnij 2020-09-20T17:54:42,840 Created temporary directory: /tmp/pip-wheel-yfalmkn5 2020-09-20T17:54:42,856 1 location(s) to search for versions of pybel: 2020-09-20T17:54:42,856 * https://pypi.org/simple/pybel/ 2020-09-20T17:54:42,856 Fetching project page and analyzing links: https://pypi.org/simple/pybel/ 2020-09-20T17:54:42,858 Getting page https://pypi.org/simple/pybel/ 2020-09-20T17:54:42,862 Found index url 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https://files.pythonhosted.org/packages/36/71/83124123a048b65e05b5640f993cf242ed726bb30d9f7f02f812e68ddbd3/pybel-0.14.0.tar.gz#sha256=85da4bc8db77f2fdfc322d2e9164d0334f68afa96c2596ba13cc3b5a5c632c5e (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.0 2020-09-20T17:54:43,314 Found link https://files.pythonhosted.org/packages/e9/0e/a7f15ed8c8b075f6320c3fe36787c3513e94bbbfc6e05a251db5c480641a/pybel-0.14.1-py3-none-any.whl#sha256=518d091cae1e7ae8ea72aedb328c9dced772ee08a3e5f586c8b1600aa55e7019 (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.1 2020-09-20T17:54:43,316 Found link https://files.pythonhosted.org/packages/95/7c/e3769712d5d31fb85eadda8585c12f25ad62b25ff6b96ab1c44d8c0e4957/pybel-0.14.1.tar.gz#sha256=b3cddf554d5e94835d20b88fc419a2026cc680d0de04933577dbdbe74e7136d8 (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.1 2020-09-20T17:54:43,317 Found link https://files.pythonhosted.org/packages/35/b2/1a4625e7e590948b2d3302eedf7d833e6f07377010da6b879954049cb6b2/pybel-0.14.2-py3-none-any.whl#sha256=3c9521db9ba5f0166bf0589d194f84ccaa383542a12256fa75bed27ca6de72af (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.2 2020-09-20T17:54:43,319 Found link https://files.pythonhosted.org/packages/7f/68/404dd8290f1bca9a3d6e1f886263d0461fbba25e067b861d167f5119e8fa/pybel-0.14.2.tar.gz#sha256=82d52a9f0b3f1a7ce63e2b208b7fab0ef79aa015baf2d7229896580d499b35de (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.2 2020-09-20T17:54:43,321 Found link https://files.pythonhosted.org/packages/98/cc/f2c7002d4c5866abc4743340160aa36220bad53137c4cda6b000c24823e6/pybel-0.14.3-py3-none-any.whl#sha256=7175454b3d84aeebd28919d697b652297537b0985a71a5a02890e596405c78c1 (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.3 2020-09-20T17:54:43,322 Found link https://files.pythonhosted.org/packages/4e/96/5724c3292bd73bdc7ead9969f3b8c8ed64eb2e22445330134e8a9bd1a7bf/pybel-0.14.3.tar.gz#sha256=ac3abffbb08b1b6ae41804a95e368a08623e900eafafa7bbf573a42fa1ced7a7 (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.3 2020-09-20T17:54:43,324 Found link https://files.pythonhosted.org/packages/93/36/4ab480a768c62496952f8b3f90a98ef6116daf4960ae2d3ddd4403d2ec08/pybel-0.14.4-py3-none-any.whl#sha256=c6bc50b40c289fbfb283a12e2d739b3586b5f1d0c80b2ed3553326f43320dad6 (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.4 2020-09-20T17:54:43,326 Found link https://files.pythonhosted.org/packages/7f/53/5b7085c497e8d6834dca0febe2ca095bfa351e88cbb6d78451c9c55a33d3/pybel-0.14.4.tar.gz#sha256=b77b3445328fb2d1ceb3578c948e6be25d49158c64e801dce1fd7445760694b0 (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.4 2020-09-20T17:54:43,327 Found link https://files.pythonhosted.org/packages/41/ea/ac7235ea4e9dc757e5713e3d176758532c44bba9d5da237517b2401b11cb/pybel-0.14.5-py3-none-any.whl#sha256=4baa69a3e44217f0c7fdb1c3d9307ccba6027b7f3f4dfb4a152731e9865b4d2d (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.5 2020-09-20T17:54:43,329 Found link https://files.pythonhosted.org/packages/24/cc/74fc9c23de564cbccc038aa90d4e68c9040ee497a4f2ad2664dd66336f66/pybel-0.14.5.tar.gz#sha256=deb77bf32cae3a919a9c157635804bdef2c42cbb0e0883dd015b05d0ce3149a1 (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.5 2020-09-20T17:54:43,331 Found link https://files.pythonhosted.org/packages/79/3e/781d44a604c6e062c28a767fe7b62bf478f6ca24d4af991de3ec3e8def2e/pybel-0.14.6-py3-none-any.whl#sha256=cdb264e90aba045f4ec4ba0dab4d3a4aaea0caf51cda3c6fc596853717468070 (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.6 2020-09-20T17:54:43,332 Found link https://files.pythonhosted.org/packages/8b/69/4615da1ecd37bffd6bca6f0791e859b29e00010da725d7c67a29ca10b31d/pybel-0.14.6.tar.gz#sha256=73e41f4bec440233a76e37304fde196c83b5f23fb910c9de38337914233aa869 (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.6 2020-09-20T17:54:43,334 Found link https://files.pythonhosted.org/packages/82/ff/44e9d578b6bf1b04ab8e0dfba410a4c40e2a771c704db0798cdd6a12cb0e/pybel-0.14.7-py3-none-any.whl#sha256=89a27adbdf292742fce4ee2dce5f36c1a71db0c7ad0745d040d9acd26f344992 (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.7 2020-09-20T17:54:43,336 Found link https://files.pythonhosted.org/packages/9c/57/71ce92c8a7e138669f0b98694d279352665048c4191ae7e49ad95b6898cd/pybel-0.14.7.tar.gz#sha256=390109dc141f3498a9e97ea2e9525845caab65c6df9e8c79a0542cec2352feb1 (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.7 2020-09-20T17:54:43,338 Found link https://files.pythonhosted.org/packages/9b/36/f4a51624d302a2da8b1468434ea226293bde042cf556d8ceb93ed337cd10/pybel-0.14.8-py3-none-any.whl#sha256=4fa04fba17356801469105393217a10b25901384a652697f0c88a7550497ac52 (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.8 2020-09-20T17:54:43,339 Found link https://files.pythonhosted.org/packages/48/10/6d98e6204b6f3dd712b7e27b69bffeeea3fb18c371fb6e78a4985d44e2bb/pybel-0.14.8.tar.gz#sha256=d35df841b1497416bcf0d4fd91622be66f029e35270107bca5a0e44d38620bdd (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.8 2020-09-20T17:54:43,341 Found link https://files.pythonhosted.org/packages/67/0f/1e84d1c37e1c5e09b465731d63029801c790a172bcd95202eb1da14a6c5c/pybel-0.14.9-py3-none-any.whl#sha256=d1ea8a5c9f26d65f3e3472dff732112b722e6149ed9d95a8119182a4973eb966 (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.9 2020-09-20T17:54:43,342 Found link https://files.pythonhosted.org/packages/78/d6/c8ce8e7937f138ea59e3c7bfaf3e7f7fe613beaa908dfa105c7576d9b387/pybel-0.14.9.tar.gz#sha256=082a4480fd576d5287ffa84505eb80f5840daef84d9f764ace466eb0b49f3230 (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.9 2020-09-20T17:54:43,344 Found link https://files.pythonhosted.org/packages/8b/bd/106a7178cb860d1a36bac3520c96f3c9509c8f22586fe1cd0a58605bff13/pybel-0.14.10-py3-none-any.whl#sha256=36cb32d5261077aae2573d3b1d05544174a69e16e5babf25f9d9514e5c41cd26 (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.10 2020-09-20T17:54:43,346 Found link https://files.pythonhosted.org/packages/09/79/2051b18f36164aaace2cc09ea2ecfabe6cdaaac0003721ce4f297348023a/pybel-0.14.10.tar.gz#sha256=47992711ffea0fa7870d2be733a1a9248dfe2b3867ff2e616899bd0ffbc667b9 (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.10 2020-09-20T17:54:43,395 Given no hashes to check 1 links for project 'pybel': discarding no candidates 2020-09-20T17:54:43,399 Using version 0.11.9 (newest of versions: 0.11.9) 2020-09-20T17:54:43,407 Collecting pybel==0.11.9 2020-09-20T17:54:43,411 Created temporary directory: /tmp/pip-unpack-oiu8smus 2020-09-20T17:54:43,492 Downloading PyBEL-0.11.9.tar.gz (312 kB) 2020-09-20T17:54:44,579 Added pybel==0.11.9 from https://files.pythonhosted.org/packages/e1/62/680b5f8a2d886f20220f7272b600ade1e6870e025307529434aad6fddf64/PyBEL-0.11.9.tar.gz#sha256=84067ee95ac0750b93bb7ffcd45995f63672fd7425febcc8c4600fd5040ba897 to build tracker '/tmp/pip-req-tracker-1e6ivnij' 2020-09-20T17:54:44,581 Running setup.py (path:/tmp/pip-wheel-yfalmkn5/pybel/setup.py) egg_info for package pybel 2020-09-20T17:54:44,582 Created temporary directory: /tmp/pip-pip-egg-info-ftsm0411 2020-09-20T17:54:44,583 Running command python setup.py egg_info 2020-09-20T17:54:46,588 running egg_info 2020-09-20T17:54:46,594 creating /tmp/pip-pip-egg-info-ftsm0411/PyBEL.egg-info 2020-09-20T17:54:46,596 writing dependency_links to /tmp/pip-pip-egg-info-ftsm0411/PyBEL.egg-info/dependency_links.txt 2020-09-20T17:54:46,598 writing top-level names to /tmp/pip-pip-egg-info-ftsm0411/PyBEL.egg-info/top_level.txt 2020-09-20T17:54:46,599 writing /tmp/pip-pip-egg-info-ftsm0411/PyBEL.egg-info/PKG-INFO 2020-09-20T17:54:46,605 writing requirements to /tmp/pip-pip-egg-info-ftsm0411/PyBEL.egg-info/requires.txt 2020-09-20T17:54:46,606 writing entry points to /tmp/pip-pip-egg-info-ftsm0411/PyBEL.egg-info/entry_points.txt 2020-09-20T17:54:46,610 writing manifest file '/tmp/pip-pip-egg-info-ftsm0411/PyBEL.egg-info/SOURCES.txt' 2020-09-20T17:54:46,944 reading manifest file '/tmp/pip-pip-egg-info-ftsm0411/PyBEL.egg-info/SOURCES.txt' 2020-09-20T17:54:46,947 reading manifest template 'MANIFEST.in' 2020-09-20T17:54:46,984 no previously-included directories found matching 'scripts' 2020-09-20T17:54:47,026 warning: no files found matching '*.bel' under directory 'src/pybel/testing/bel' 2020-09-20T17:54:47,027 warning: no files found matching '*.belanno' under directory 'src/pybel/testing/belanno' 2020-09-20T17:54:47,028 warning: no files found matching '*.belns' under directory 'src/pybel/testing/belns' 2020-09-20T17:54:47,032 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2020-09-20T17:54:47,034 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2020-09-20T17:54:47,037 warning: no previously-included files matching '*.so' found anywhere in distribution 2020-09-20T17:54:47,040 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2020-09-20T17:54:47,042 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2020-09-20T17:54:47,046 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2020-09-20T17:54:47,047 warning: no previously-included files found matching '.bumpversion.cfg' 2020-09-20T17:54:47,079 writing manifest file '/tmp/pip-pip-egg-info-ftsm0411/PyBEL.egg-info/SOURCES.txt' 2020-09-20T17:54:47,212 Source in /tmp/pip-wheel-yfalmkn5/pybel has version 0.11.9, which satisfies requirement pybel==0.11.9 from https://files.pythonhosted.org/packages/e1/62/680b5f8a2d886f20220f7272b600ade1e6870e025307529434aad6fddf64/PyBEL-0.11.9.tar.gz#sha256=84067ee95ac0750b93bb7ffcd45995f63672fd7425febcc8c4600fd5040ba897 2020-09-20T17:54:47,213 Removed pybel==0.11.9 from https://files.pythonhosted.org/packages/e1/62/680b5f8a2d886f20220f7272b600ade1e6870e025307529434aad6fddf64/PyBEL-0.11.9.tar.gz#sha256=84067ee95ac0750b93bb7ffcd45995f63672fd7425febcc8c4600fd5040ba897 from build tracker '/tmp/pip-req-tracker-1e6ivnij' 2020-09-20T17:54:47,219 Building wheels for collected packages: pybel 2020-09-20T17:54:47,226 Created temporary directory: /tmp/pip-wheel-s97vel2w 2020-09-20T17:54:47,227 Building wheel for pybel (setup.py): started 2020-09-20T17:54:47,227 Destination directory: /tmp/pip-wheel-s97vel2w 2020-09-20T17:54:47,228 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-yfalmkn5/pybel/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-yfalmkn5/pybel/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-s97vel2w 2020-09-20T17:54:49,190 running bdist_wheel 2020-09-20T17:54:49,204 running build 2020-09-20T17:54:49,204 running build_py 2020-09-20T17:54:49,493 creating build 2020-09-20T17:54:49,494 creating build/lib 2020-09-20T17:54:49,495 creating build/lib/pybel 2020-09-20T17:54:49,498 copying src/pybel/tokens.py -> build/lib/pybel 2020-09-20T17:54:49,502 copying src/pybel/__main__.py -> build/lib/pybel 2020-09-20T17:54:49,505 copying src/pybel/canonicalize.py -> build/lib/pybel 2020-09-20T17:54:49,509 copying src/pybel/__init__.py -> build/lib/pybel 2020-09-20T17:54:49,513 copying src/pybel/utils.py -> build/lib/pybel 2020-09-20T17:54:49,519 copying src/pybel/language.py -> build/lib/pybel 2020-09-20T17:54:49,522 copying src/pybel/constants.py -> build/lib/pybel 2020-09-20T17:54:49,527 copying src/pybel/exceptions.py -> build/lib/pybel 2020-09-20T17:54:49,531 copying src/pybel/cli.py -> build/lib/pybel 2020-09-20T17:54:49,541 creating build/lib/pybel/manager 2020-09-20T17:54:49,543 copying src/pybel/manager/citation_utils.py -> build/lib/pybel/manager 2020-09-20T17:54:49,550 copying src/pybel/manager/cache_manager.py -> build/lib/pybel/manager 2020-09-20T17:54:49,556 copying src/pybel/manager/__init__.py -> build/lib/pybel/manager 2020-09-20T17:54:49,559 copying src/pybel/manager/utils.py -> build/lib/pybel/manager 2020-09-20T17:54:49,562 copying src/pybel/manager/query_manager.py -> build/lib/pybel/manager 2020-09-20T17:54:49,566 copying src/pybel/manager/defaults.py -> build/lib/pybel/manager 2020-09-20T17:54:49,571 copying src/pybel/manager/exc.py -> build/lib/pybel/manager 2020-09-20T17:54:49,576 copying src/pybel/manager/base_manager.py -> build/lib/pybel/manager 2020-09-20T17:54:49,581 copying src/pybel/manager/make_json_serializable.py -> build/lib/pybel/manager 2020-09-20T17:54:49,586 copying src/pybel/manager/database_io.py -> build/lib/pybel/manager 2020-09-20T17:54:49,591 copying src/pybel/manager/models.py -> build/lib/pybel/manager 2020-09-20T17:54:49,597 copying src/pybel/manager/lookup_manager.py -> build/lib/pybel/manager 2020-09-20T17:54:49,601 creating build/lib/pybel/dsl 2020-09-20T17:54:49,603 copying src/pybel/dsl/__init__.py -> build/lib/pybel/dsl 2020-09-20T17:54:49,606 copying src/pybel/dsl/nodes.py -> build/lib/pybel/dsl 2020-09-20T17:54:49,611 copying src/pybel/dsl/utils.py -> build/lib/pybel/dsl 2020-09-20T17:54:49,614 copying src/pybel/dsl/exc.py -> build/lib/pybel/dsl 2020-09-20T17:54:49,617 copying src/pybel/dsl/edges.py -> build/lib/pybel/dsl 2020-09-20T17:54:49,621 copying src/pybel/dsl/namespaces.py -> build/lib/pybel/dsl 2020-09-20T17:54:49,625 creating build/lib/pybel/testing 2020-09-20T17:54:49,627 copying src/pybel/testing/mocks.py -> build/lib/pybel/testing 2020-09-20T17:54:49,630 copying src/pybel/testing/__init__.py -> build/lib/pybel/testing 2020-09-20T17:54:49,633 copying src/pybel/testing/utils.py -> build/lib/pybel/testing 2020-09-20T17:54:49,636 copying src/pybel/testing/constants.py -> build/lib/pybel/testing 2020-09-20T17:54:49,640 copying src/pybel/testing/cases.py -> build/lib/pybel/testing 2020-09-20T17:54:49,646 creating build/lib/pybel/parser 2020-09-20T17:54:49,648 copying src/pybel/parser/parse_control.py -> build/lib/pybel/parser 2020-09-20T17:54:49,653 copying src/pybel/parser/parse_bel.py -> build/lib/pybel/parser 2020-09-20T17:54:49,661 copying src/pybel/parser/__init__.py -> build/lib/pybel/parser 2020-09-20T17:54:49,665 copying src/pybel/parser/utils.py -> build/lib/pybel/parser 2020-09-20T17:54:49,671 copying src/pybel/parser/exc.py -> build/lib/pybel/parser 2020-09-20T17:54:49,676 copying src/pybel/parser/baseparser.py -> build/lib/pybel/parser 2020-09-20T17:54:49,679 copying src/pybel/parser/parse_identifier.py -> build/lib/pybel/parser 2020-09-20T17:54:49,682 copying src/pybel/parser/parse_metadata.py -> build/lib/pybel/parser 2020-09-20T17:54:49,688 creating build/lib/pybel/io 2020-09-20T17:54:49,690 copying src/pybel/io/indra.py -> build/lib/pybel/io 2020-09-20T17:54:49,693 copying src/pybel/io/gpickle.py -> build/lib/pybel/io 2020-09-20T17:54:49,696 copying src/pybel/io/extras.py -> build/lib/pybel/io 2020-09-20T17:54:49,699 copying src/pybel/io/__init__.py -> build/lib/pybel/io 2020-09-20T17:54:49,702 copying src/pybel/io/utils.py -> build/lib/pybel/io 2020-09-20T17:54:49,705 copying src/pybel/io/exc.py -> build/lib/pybel/io 2020-09-20T17:54:49,709 copying src/pybel/io/jgif.py -> build/lib/pybel/io 2020-09-20T17:54:49,712 copying src/pybel/io/line_utils.py -> build/lib/pybel/io 2020-09-20T17:54:49,716 copying src/pybel/io/lines.py -> build/lib/pybel/io 2020-09-20T17:54:49,719 copying src/pybel/io/web.py -> build/lib/pybel/io 2020-09-20T17:54:49,723 copying src/pybel/io/nodelink.py -> build/lib/pybel/io 2020-09-20T17:54:49,726 copying src/pybel/io/neo4j.py -> build/lib/pybel/io 2020-09-20T17:54:49,731 creating build/lib/pybel/resources 2020-09-20T17:54:49,732 copying src/pybel/resources/document.py -> build/lib/pybel/resources 2020-09-20T17:54:49,736 copying src/pybel/resources/__init__.py -> build/lib/pybel/resources 2020-09-20T17:54:49,739 copying src/pybel/resources/utils.py -> build/lib/pybel/resources 2020-09-20T17:54:49,742 copying src/pybel/resources/exc.py -> build/lib/pybel/resources 2020-09-20T17:54:49,745 copying src/pybel/resources/constants.py -> build/lib/pybel/resources 2020-09-20T17:54:49,750 creating build/lib/pybel/examples 2020-09-20T17:54:49,751 copying src/pybel/examples/homology_example.py -> build/lib/pybel/examples 2020-09-20T17:54:49,755 copying src/pybel/examples/sialic_acid_example.py -> build/lib/pybel/examples 2020-09-20T17:54:49,758 copying src/pybel/examples/statin_example.py -> build/lib/pybel/examples 2020-09-20T17:54:49,761 copying src/pybel/examples/__init__.py -> build/lib/pybel/examples 2020-09-20T17:54:49,764 copying src/pybel/examples/egf_example.py -> build/lib/pybel/examples 2020-09-20T17:54:49,768 copying src/pybel/examples/braf_example.py -> build/lib/pybel/examples 2020-09-20T17:54:49,772 creating build/lib/pybel/struct 2020-09-20T17:54:49,774 copying src/pybel/struct/__init__.py -> build/lib/pybel/struct 2020-09-20T17:54:49,779 copying src/pybel/struct/utils.py -> build/lib/pybel/struct 2020-09-20T17:54:49,784 copying src/pybel/struct/operations.py -> build/lib/pybel/struct 2020-09-20T17:54:49,790 copying src/pybel/struct/graph.py -> build/lib/pybel/struct 2020-09-20T17:54:49,798 creating build/lib/pybel/parser/modifiers 2020-09-20T17:54:49,800 copying src/pybel/parser/modifiers/variant.py -> build/lib/pybel/parser/modifiers 2020-09-20T17:54:49,803 copying src/pybel/parser/modifiers/fragment.py -> build/lib/pybel/parser/modifiers 2020-09-20T17:54:49,807 copying src/pybel/parser/modifiers/gene_substitution.py -> build/lib/pybel/parser/modifiers 2020-09-20T17:54:49,810 copying src/pybel/parser/modifiers/truncation.py -> build/lib/pybel/parser/modifiers 2020-09-20T17:54:49,813 copying src/pybel/parser/modifiers/__init__.py -> build/lib/pybel/parser/modifiers 2020-09-20T17:54:49,816 copying src/pybel/parser/modifiers/protein_modification.py -> build/lib/pybel/parser/modifiers 2020-09-20T17:54:49,820 copying src/pybel/parser/modifiers/location.py -> build/lib/pybel/parser/modifiers 2020-09-20T17:54:49,823 copying src/pybel/parser/modifiers/constants.py -> build/lib/pybel/parser/modifiers 2020-09-20T17:54:49,826 copying src/pybel/parser/modifiers/gene_modification.py -> build/lib/pybel/parser/modifiers 2020-09-20T17:54:49,830 copying src/pybel/parser/modifiers/protein_substitution.py -> build/lib/pybel/parser/modifiers 2020-09-20T17:54:49,833 copying src/pybel/parser/modifiers/fusion.py -> build/lib/pybel/parser/modifiers 2020-09-20T17:54:49,840 creating build/lib/pybel/resources/definitions 2020-09-20T17:54:49,843 copying src/pybel/resources/definitions/annotation.py -> build/lib/pybel/resources/definitions 2020-09-20T17:54:49,849 copying src/pybel/resources/definitions/namespace.py -> build/lib/pybel/resources/definitions 2020-09-20T17:54:49,855 copying src/pybel/resources/definitions/__init__.py -> build/lib/pybel/resources/definitions 2020-09-20T17:54:49,858 copying src/pybel/resources/definitions/definitions.py -> build/lib/pybel/resources/definitions 2020-09-20T17:54:49,862 copying src/pybel/resources/definitions/write_utils.py -> build/lib/pybel/resources/definitions 2020-09-20T17:54:49,866 creating build/lib/pybel/struct/mutation 2020-09-20T17:54:49,868 copying src/pybel/struct/mutation/transfer.py -> build/lib/pybel/struct/mutation 2020-09-20T17:54:49,872 copying src/pybel/struct/mutation/bound.py -> build/lib/pybel/struct/mutation 2020-09-20T17:54:49,875 copying src/pybel/struct/mutation/metadata.py -> build/lib/pybel/struct/mutation 2020-09-20T17:54:49,879 copying src/pybel/struct/mutation/__init__.py -> build/lib/pybel/struct/mutation 2020-09-20T17:54:49,884 copying src/pybel/struct/mutation/utils.py -> build/lib/pybel/struct/mutation 2020-09-20T17:54:49,891 creating build/lib/pybel/struct/pipeline 2020-09-20T17:54:49,894 copying src/pybel/struct/pipeline/decorators.py -> build/lib/pybel/struct/pipeline 2020-09-20T17:54:49,899 copying src/pybel/struct/pipeline/pipeline.py -> build/lib/pybel/struct/pipeline 2020-09-20T17:54:49,903 copying src/pybel/struct/pipeline/__init__.py -> build/lib/pybel/struct/pipeline 2020-09-20T17:54:49,906 copying src/pybel/struct/pipeline/exc.py -> build/lib/pybel/struct/pipeline 2020-09-20T17:54:49,910 creating build/lib/pybel/struct/grouping 2020-09-20T17:54:49,912 copying src/pybel/struct/grouping/__init__.py -> build/lib/pybel/struct/grouping 2020-09-20T17:54:49,915 copying src/pybel/struct/grouping/annotations.py -> build/lib/pybel/struct/grouping 2020-09-20T17:54:49,920 creating build/lib/pybel/struct/summary 2020-09-20T17:54:49,921 copying src/pybel/struct/summary/edge_summary.py -> build/lib/pybel/struct/summary 2020-09-20T17:54:49,925 copying src/pybel/struct/summary/__init__.py -> build/lib/pybel/struct/summary 2020-09-20T17:54:49,928 copying src/pybel/struct/summary/provenance.py -> build/lib/pybel/struct/summary 2020-09-20T17:54:49,932 copying src/pybel/struct/summary/errors.py -> build/lib/pybel/struct/summary 2020-09-20T17:54:49,935 copying src/pybel/struct/summary/node_summary.py -> build/lib/pybel/struct/summary 2020-09-20T17:54:49,941 creating build/lib/pybel/struct/filters 2020-09-20T17:54:49,942 copying src/pybel/struct/filters/node_selection.py -> build/lib/pybel/struct/filters 2020-09-20T17:54:49,946 copying src/pybel/struct/filters/edge_predicate_builders.py -> build/lib/pybel/struct/filters 2020-09-20T17:54:49,949 copying src/pybel/struct/filters/edge_predicates.py -> build/lib/pybel/struct/filters 2020-09-20T17:54:49,953 copying src/pybel/struct/filters/node_predicates.py -> build/lib/pybel/struct/filters 2020-09-20T17:54:49,957 copying src/pybel/struct/filters/__init__.py -> build/lib/pybel/struct/filters 2020-09-20T17:54:49,987 copying src/pybel/struct/filters/utils.py -> build/lib/pybel/struct/filters 2020-09-20T17:54:49,993 copying src/pybel/struct/filters/node_predicate_builders.py -> build/lib/pybel/struct/filters 2020-09-20T17:54:49,999 copying src/pybel/struct/filters/node_filters.py -> build/lib/pybel/struct/filters 2020-09-20T17:54:50,006 copying src/pybel/struct/filters/edge_filters.py -> build/lib/pybel/struct/filters 2020-09-20T17:54:50,018 creating build/lib/pybel/struct/mutation/expansion 2020-09-20T17:54:50,021 copying src/pybel/struct/mutation/expansion/upstream.py -> build/lib/pybel/struct/mutation/expansion 2020-09-20T17:54:50,027 copying src/pybel/struct/mutation/expansion/__init__.py -> build/lib/pybel/struct/mutation/expansion 2020-09-20T17:54:50,033 copying src/pybel/struct/mutation/expansion/neighborhood.py -> build/lib/pybel/struct/mutation/expansion 2020-09-20T17:54:50,040 creating build/lib/pybel/struct/mutation/inference 2020-09-20T17:54:50,042 copying src/pybel/struct/mutation/inference/protein_rna_origins.py -> build/lib/pybel/struct/mutation/inference 2020-09-20T17:54:50,047 copying src/pybel/struct/mutation/inference/__init__.py -> build/lib/pybel/struct/mutation/inference 2020-09-20T17:54:50,051 creating build/lib/pybel/struct/mutation/deletion 2020-09-20T17:54:50,053 copying src/pybel/struct/mutation/deletion/protein_rna_origins.py -> build/lib/pybel/struct/mutation/deletion 2020-09-20T17:54:50,056 copying src/pybel/struct/mutation/deletion/__init__.py -> build/lib/pybel/struct/mutation/deletion 2020-09-20T17:54:50,059 copying src/pybel/struct/mutation/deletion/deletion.py -> build/lib/pybel/struct/mutation/deletion 2020-09-20T17:54:50,063 creating build/lib/pybel/struct/mutation/induction 2020-09-20T17:54:50,065 copying src/pybel/struct/mutation/induction/upstream.py -> build/lib/pybel/struct/mutation/induction 2020-09-20T17:54:50,068 copying src/pybel/struct/mutation/induction/__init__.py -> build/lib/pybel/struct/mutation/induction 2020-09-20T17:54:50,071 copying src/pybel/struct/mutation/induction/utils.py -> build/lib/pybel/struct/mutation/induction 2020-09-20T17:54:50,075 creating build/lib/pybel/struct/mutation/collapse 2020-09-20T17:54:50,077 copying src/pybel/struct/mutation/collapse/collapse.py -> build/lib/pybel/struct/mutation/collapse 2020-09-20T17:54:50,081 copying src/pybel/struct/mutation/collapse/protein_rna_origins.py -> build/lib/pybel/struct/mutation/collapse 2020-09-20T17:54:50,084 copying src/pybel/struct/mutation/collapse/__init__.py -> build/lib/pybel/struct/mutation/collapse 2020-09-20T17:54:50,087 running egg_info 2020-09-20T17:54:50,112 writing src/PyBEL.egg-info/PKG-INFO 2020-09-20T17:54:50,116 writing requirements to src/PyBEL.egg-info/requires.txt 2020-09-20T17:54:50,118 writing top-level names to src/PyBEL.egg-info/top_level.txt 2020-09-20T17:54:50,121 writing dependency_links to src/PyBEL.egg-info/dependency_links.txt 2020-09-20T17:54:50,123 writing entry points to src/PyBEL.egg-info/entry_points.txt 2020-09-20T17:54:50,157 reading manifest file 'src/PyBEL.egg-info/SOURCES.txt' 2020-09-20T17:54:50,190 reading manifest template 'MANIFEST.in' 2020-09-20T17:54:50,229 no previously-included directories found matching 'scripts' 2020-09-20T17:54:50,273 warning: no files found matching '*.bel' under directory 'src/pybel/testing/bel' 2020-09-20T17:54:50,274 warning: no files found matching '*.belanno' under directory 'src/pybel/testing/belanno' 2020-09-20T17:54:50,275 warning: no files found matching '*.belns' under directory 'src/pybel/testing/belns' 2020-09-20T17:54:50,279 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2020-09-20T17:54:50,283 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2020-09-20T17:54:50,287 warning: no previously-included files matching '*.so' found anywhere in distribution 2020-09-20T17:54:50,291 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2020-09-20T17:54:50,295 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2020-09-20T17:54:50,299 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2020-09-20T17:54:50,302 warning: no previously-included files found matching '.bumpversion.cfg' 2020-09-20T17:54:50,342 writing manifest file 'src/PyBEL.egg-info/SOURCES.txt' 2020-09-20T17:54:50,361 creating build/lib/pybel/testing/resources 2020-09-20T17:54:50,362 creating build/lib/pybel/testing/resources/bel 2020-09-20T17:54:50,364 copying src/pybel/testing/resources/bel/Cytotoxic T-cell Signaling-2.0-Hs.json -> build/lib/pybel/testing/resources/bel 2020-09-20T17:54:50,387 copying src/pybel/testing/resources/bel/isolated.bel -> build/lib/pybel/testing/resources/bel 2020-09-20T17:54:50,390 copying src/pybel/testing/resources/bel/misordered.bel -> build/lib/pybel/testing/resources/bel 2020-09-20T17:54:50,394 copying src/pybel/testing/resources/bel/slushy.bel -> build/lib/pybel/testing/resources/bel 2020-09-20T17:54:50,398 copying src/pybel/testing/resources/bel/test_bel.bel -> build/lib/pybel/testing/resources/bel 2020-09-20T17:54:50,402 copying src/pybel/testing/resources/bel/thorough.bel -> build/lib/pybel/testing/resources/bel 2020-09-20T17:54:50,430 creating build/lib/pybel/testing/resources/belanno 2020-09-20T17:54:50,432 copying src/pybel/testing/resources/belanno/cell-line.belanno -> build/lib/pybel/testing/resources/belanno 2020-09-20T17:54:50,438 copying src/pybel/testing/resources/belanno/confidence-1.0.0.belanno -> build/lib/pybel/testing/resources/belanno 2020-09-20T17:54:50,444 copying src/pybel/testing/resources/belanno/mesh-diseases.belanno -> build/lib/pybel/testing/resources/belanno 2020-09-20T17:54:50,448 copying src/pybel/testing/resources/belanno/species-taxonomy-id.belanno -> build/lib/pybel/testing/resources/belanno 2020-09-20T17:54:50,452 copying src/pybel/testing/resources/belanno/test_an_1.belanno -> build/lib/pybel/testing/resources/belanno 2020-09-20T17:54:50,455 creating build/lib/pybel/testing/resources/belns 2020-09-20T17:54:50,457 copying src/pybel/testing/resources/belns/chebi.belns -> build/lib/pybel/testing/resources/belns 2020-09-20T17:54:50,460 copying src/pybel/testing/resources/belns/disease-ontology.belns -> build/lib/pybel/testing/resources/belns 2020-09-20T17:54:50,464 copying src/pybel/testing/resources/belns/go-biological-process.belns -> build/lib/pybel/testing/resources/belns 2020-09-20T17:54:50,468 copying src/pybel/testing/resources/belns/go-cellular-component.belns -> build/lib/pybel/testing/resources/belns 2020-09-20T17:54:50,471 copying src/pybel/testing/resources/belns/hgnc-human-genes.belns -> build/lib/pybel/testing/resources/belns 2020-09-20T17:54:50,475 copying src/pybel/testing/resources/belns/mesh-diseases.belns -> build/lib/pybel/testing/resources/belns 2020-09-20T17:54:50,479 copying src/pybel/testing/resources/belns/test_nocache.belns -> build/lib/pybel/testing/resources/belns 2020-09-20T17:54:50,482 copying src/pybel/testing/resources/belns/test_ns_1.belns -> build/lib/pybel/testing/resources/belns 2020-09-20T17:54:50,486 copying src/pybel/testing/resources/belns/test_ns_1_updated.belns -> build/lib/pybel/testing/resources/belns 2020-09-20T17:54:50,490 copying src/pybel/testing/resources/belns/test_ns_2.belns -> build/lib/pybel/testing/resources/belns 2020-09-20T17:54:50,493 copying src/pybel/testing/resources/belns/test_ns_empty.belns -> build/lib/pybel/testing/resources/belns 2020-09-20T17:54:50,528 installing to build/bdist.linux-armv7l/wheel 2020-09-20T17:54:50,529 running install 2020-09-20T17:54:50,531 running install_lib 2020-09-20T17:54:50,537 creating build/bdist.linux-armv7l 2020-09-20T17:54:50,538 creating build/bdist.linux-armv7l/wheel 2020-09-20T17:54:50,541 creating build/bdist.linux-armv7l/wheel/pybel 2020-09-20T17:54:50,543 creating build/bdist.linux-armv7l/wheel/pybel/manager 2020-09-20T17:54:50,545 copying build/lib/pybel/manager/citation_utils.py -> build/bdist.linux-armv7l/wheel/pybel/manager 2020-09-20T17:54:50,549 copying build/lib/pybel/manager/cache_manager.py -> build/bdist.linux-armv7l/wheel/pybel/manager 2020-09-20T17:54:50,555 copying build/lib/pybel/manager/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/manager 2020-09-20T17:54:50,558 copying build/lib/pybel/manager/utils.py -> build/bdist.linux-armv7l/wheel/pybel/manager 2020-09-20T17:54:50,562 copying build/lib/pybel/manager/query_manager.py -> build/bdist.linux-armv7l/wheel/pybel/manager 2020-09-20T17:54:50,565 copying build/lib/pybel/manager/defaults.py -> build/bdist.linux-armv7l/wheel/pybel/manager 2020-09-20T17:54:50,569 copying build/lib/pybel/manager/exc.py -> build/bdist.linux-armv7l/wheel/pybel/manager 2020-09-20T17:54:50,572 copying build/lib/pybel/manager/base_manager.py -> build/bdist.linux-armv7l/wheel/pybel/manager 2020-09-20T17:54:50,576 copying build/lib/pybel/manager/make_json_serializable.py -> build/bdist.linux-armv7l/wheel/pybel/manager 2020-09-20T17:54:50,580 copying build/lib/pybel/manager/database_io.py -> build/bdist.linux-armv7l/wheel/pybel/manager 2020-09-20T17:54:50,583 copying build/lib/pybel/manager/models.py -> build/bdist.linux-armv7l/wheel/pybel/manager 2020-09-20T17:54:50,588 copying build/lib/pybel/manager/lookup_manager.py -> build/bdist.linux-armv7l/wheel/pybel/manager 2020-09-20T17:54:50,592 creating build/bdist.linux-armv7l/wheel/pybel/dsl 2020-09-20T17:54:50,594 copying build/lib/pybel/dsl/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/dsl 2020-09-20T17:54:50,597 copying build/lib/pybel/dsl/nodes.py -> build/bdist.linux-armv7l/wheel/pybel/dsl 2020-09-20T17:54:50,602 copying build/lib/pybel/dsl/utils.py -> build/bdist.linux-armv7l/wheel/pybel/dsl 2020-09-20T17:54:50,606 copying build/lib/pybel/dsl/exc.py -> build/bdist.linux-armv7l/wheel/pybel/dsl 2020-09-20T17:54:50,611 copying build/lib/pybel/dsl/edges.py -> build/bdist.linux-armv7l/wheel/pybel/dsl 2020-09-20T17:54:50,620 copying build/lib/pybel/dsl/namespaces.py -> build/bdist.linux-armv7l/wheel/pybel/dsl 2020-09-20T17:54:50,637 creating build/bdist.linux-armv7l/wheel/pybel/testing 2020-09-20T17:54:50,639 copying build/lib/pybel/testing/mocks.py -> build/bdist.linux-armv7l/wheel/pybel/testing 2020-09-20T17:54:50,645 copying build/lib/pybel/testing/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/testing 2020-09-20T17:54:50,649 copying build/lib/pybel/testing/utils.py -> build/bdist.linux-armv7l/wheel/pybel/testing 2020-09-20T17:54:50,657 creating build/bdist.linux-armv7l/wheel/pybel/testing/resources 2020-09-20T17:54:50,661 creating build/bdist.linux-armv7l/wheel/pybel/testing/resources/bel 2020-09-20T17:54:50,663 copying build/lib/pybel/testing/resources/bel/thorough.bel -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/bel 2020-09-20T17:54:50,669 copying build/lib/pybel/testing/resources/bel/misordered.bel -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/bel 2020-09-20T17:54:50,672 copying build/lib/pybel/testing/resources/bel/test_bel.bel -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/bel 2020-09-20T17:54:50,675 copying build/lib/pybel/testing/resources/bel/Cytotoxic T-cell Signaling-2.0-Hs.json -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/bel 2020-09-20T17:54:50,698 copying build/lib/pybel/testing/resources/bel/slushy.bel -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/bel 2020-09-20T17:54:50,701 copying build/lib/pybel/testing/resources/bel/isolated.bel -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/bel 2020-09-20T17:54:50,705 creating build/bdist.linux-armv7l/wheel/pybel/testing/resources/belns 2020-09-20T17:54:50,707 copying build/lib/pybel/testing/resources/belns/test_ns_1.belns -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/belns 2020-09-20T17:54:50,711 copying build/lib/pybel/testing/resources/belns/disease-ontology.belns -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/belns 2020-09-20T17:54:50,716 copying build/lib/pybel/testing/resources/belns/test_ns_2.belns -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/belns 2020-09-20T17:54:50,721 copying build/lib/pybel/testing/resources/belns/go-biological-process.belns -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/belns 2020-09-20T17:54:50,726 copying build/lib/pybel/testing/resources/belns/go-cellular-component.belns -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/belns 2020-09-20T17:54:50,730 copying build/lib/pybel/testing/resources/belns/test_ns_empty.belns -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/belns 2020-09-20T17:54:50,733 copying build/lib/pybel/testing/resources/belns/mesh-diseases.belns -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/belns 2020-09-20T17:54:50,737 copying build/lib/pybel/testing/resources/belns/test_ns_1_updated.belns -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/belns 2020-09-20T17:54:50,740 copying build/lib/pybel/testing/resources/belns/chebi.belns -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/belns 2020-09-20T17:54:50,743 copying build/lib/pybel/testing/resources/belns/test_nocache.belns -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/belns 2020-09-20T17:54:50,747 copying build/lib/pybel/testing/resources/belns/hgnc-human-genes.belns -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/belns 2020-09-20T17:54:50,752 creating build/bdist.linux-armv7l/wheel/pybel/testing/resources/belanno 2020-09-20T17:54:50,754 copying build/lib/pybel/testing/resources/belanno/test_an_1.belanno -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/belanno 2020-09-20T17:54:50,760 copying build/lib/pybel/testing/resources/belanno/cell-line.belanno -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/belanno 2020-09-20T17:54:50,764 copying build/lib/pybel/testing/resources/belanno/confidence-1.0.0.belanno -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/belanno 2020-09-20T17:54:50,769 copying build/lib/pybel/testing/resources/belanno/mesh-diseases.belanno -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/belanno 2020-09-20T17:54:50,773 copying build/lib/pybel/testing/resources/belanno/species-taxonomy-id.belanno -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/belanno 2020-09-20T17:54:50,776 copying build/lib/pybel/testing/constants.py -> build/bdist.linux-armv7l/wheel/pybel/testing 2020-09-20T17:54:50,779 copying build/lib/pybel/testing/cases.py -> build/bdist.linux-armv7l/wheel/pybel/testing 2020-09-20T17:54:50,782 copying build/lib/pybel/tokens.py -> build/bdist.linux-armv7l/wheel/pybel 2020-09-20T17:54:50,787 creating build/bdist.linux-armv7l/wheel/pybel/parser 2020-09-20T17:54:50,789 copying build/lib/pybel/parser/parse_control.py -> build/bdist.linux-armv7l/wheel/pybel/parser 2020-09-20T17:54:50,795 copying build/lib/pybel/parser/parse_bel.py -> build/bdist.linux-armv7l/wheel/pybel/parser 2020-09-20T17:54:50,802 copying build/lib/pybel/parser/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/parser 2020-09-20T17:54:50,807 copying build/lib/pybel/parser/utils.py -> build/bdist.linux-armv7l/wheel/pybel/parser 2020-09-20T17:54:50,814 creating build/bdist.linux-armv7l/wheel/pybel/parser/modifiers 2020-09-20T17:54:50,816 copying build/lib/pybel/parser/modifiers/variant.py -> build/bdist.linux-armv7l/wheel/pybel/parser/modifiers 2020-09-20T17:54:50,822 copying build/lib/pybel/parser/modifiers/fragment.py -> build/bdist.linux-armv7l/wheel/pybel/parser/modifiers 2020-09-20T17:54:50,827 copying build/lib/pybel/parser/modifiers/gene_substitution.py -> build/bdist.linux-armv7l/wheel/pybel/parser/modifiers 2020-09-20T17:54:50,831 copying build/lib/pybel/parser/modifiers/truncation.py -> build/bdist.linux-armv7l/wheel/pybel/parser/modifiers 2020-09-20T17:54:50,835 copying build/lib/pybel/parser/modifiers/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/parser/modifiers 2020-09-20T17:54:50,838 copying build/lib/pybel/parser/modifiers/protein_modification.py -> build/bdist.linux-armv7l/wheel/pybel/parser/modifiers 2020-09-20T17:54:50,842 copying build/lib/pybel/parser/modifiers/location.py -> build/bdist.linux-armv7l/wheel/pybel/parser/modifiers 2020-09-20T17:54:50,845 copying build/lib/pybel/parser/modifiers/constants.py -> build/bdist.linux-armv7l/wheel/pybel/parser/modifiers 2020-09-20T17:54:50,848 copying build/lib/pybel/parser/modifiers/gene_modification.py -> build/bdist.linux-armv7l/wheel/pybel/parser/modifiers 2020-09-20T17:54:50,851 copying build/lib/pybel/parser/modifiers/protein_substitution.py -> build/bdist.linux-armv7l/wheel/pybel/parser/modifiers 2020-09-20T17:54:50,856 copying build/lib/pybel/parser/modifiers/fusion.py -> build/bdist.linux-armv7l/wheel/pybel/parser/modifiers 2020-09-20T17:54:50,860 copying build/lib/pybel/parser/exc.py -> build/bdist.linux-armv7l/wheel/pybel/parser 2020-09-20T17:54:50,867 copying build/lib/pybel/parser/baseparser.py -> build/bdist.linux-armv7l/wheel/pybel/parser 2020-09-20T17:54:50,872 copying build/lib/pybel/parser/parse_identifier.py -> build/bdist.linux-armv7l/wheel/pybel/parser 2020-09-20T17:54:50,876 copying build/lib/pybel/parser/parse_metadata.py -> build/bdist.linux-armv7l/wheel/pybel/parser 2020-09-20T17:54:50,880 copying build/lib/pybel/__main__.py -> build/bdist.linux-armv7l/wheel/pybel 2020-09-20T17:54:50,883 copying build/lib/pybel/canonicalize.py -> build/bdist.linux-armv7l/wheel/pybel 2020-09-20T17:54:50,888 creating build/bdist.linux-armv7l/wheel/pybel/io 2020-09-20T17:54:50,889 copying build/lib/pybel/io/indra.py -> build/bdist.linux-armv7l/wheel/pybel/io 2020-09-20T17:54:50,893 copying build/lib/pybel/io/gpickle.py -> build/bdist.linux-armv7l/wheel/pybel/io 2020-09-20T17:54:50,898 copying build/lib/pybel/io/extras.py -> build/bdist.linux-armv7l/wheel/pybel/io 2020-09-20T17:54:50,903 copying build/lib/pybel/io/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/io 2020-09-20T17:54:50,908 copying build/lib/pybel/io/utils.py -> build/bdist.linux-armv7l/wheel/pybel/io 2020-09-20T17:54:50,912 copying build/lib/pybel/io/exc.py -> build/bdist.linux-armv7l/wheel/pybel/io 2020-09-20T17:54:50,916 copying build/lib/pybel/io/jgif.py -> build/bdist.linux-armv7l/wheel/pybel/io 2020-09-20T17:54:50,920 copying build/lib/pybel/io/line_utils.py -> build/bdist.linux-armv7l/wheel/pybel/io 2020-09-20T17:54:50,924 copying build/lib/pybel/io/lines.py -> build/bdist.linux-armv7l/wheel/pybel/io 2020-09-20T17:54:50,927 copying build/lib/pybel/io/web.py -> build/bdist.linux-armv7l/wheel/pybel/io 2020-09-20T17:54:50,930 copying build/lib/pybel/io/nodelink.py -> build/bdist.linux-armv7l/wheel/pybel/io 2020-09-20T17:54:50,934 copying build/lib/pybel/io/neo4j.py -> build/bdist.linux-armv7l/wheel/pybel/io 2020-09-20T17:54:50,939 copying build/lib/pybel/__init__.py -> build/bdist.linux-armv7l/wheel/pybel 2020-09-20T17:54:50,946 copying build/lib/pybel/utils.py -> build/bdist.linux-armv7l/wheel/pybel 2020-09-20T17:54:50,952 creating build/bdist.linux-armv7l/wheel/pybel/resources 2020-09-20T17:54:50,955 creating build/bdist.linux-armv7l/wheel/pybel/resources/definitions 2020-09-20T17:54:50,957 copying build/lib/pybel/resources/definitions/annotation.py -> build/bdist.linux-armv7l/wheel/pybel/resources/definitions 2020-09-20T17:54:50,961 copying build/lib/pybel/resources/definitions/namespace.py -> build/bdist.linux-armv7l/wheel/pybel/resources/definitions 2020-09-20T17:54:50,964 copying build/lib/pybel/resources/definitions/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/resources/definitions 2020-09-20T17:54:50,968 copying build/lib/pybel/resources/definitions/definitions.py -> build/bdist.linux-armv7l/wheel/pybel/resources/definitions 2020-09-20T17:54:50,971 copying build/lib/pybel/resources/definitions/write_utils.py -> build/bdist.linux-armv7l/wheel/pybel/resources/definitions 2020-09-20T17:54:50,976 copying build/lib/pybel/resources/document.py -> build/bdist.linux-armv7l/wheel/pybel/resources 2020-09-20T17:54:50,981 copying build/lib/pybel/resources/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/resources 2020-09-20T17:54:50,986 copying build/lib/pybel/resources/utils.py -> build/bdist.linux-armv7l/wheel/pybel/resources 2020-09-20T17:54:50,991 copying build/lib/pybel/resources/exc.py -> build/bdist.linux-armv7l/wheel/pybel/resources 2020-09-20T17:54:50,995 copying build/lib/pybel/resources/constants.py -> build/bdist.linux-armv7l/wheel/pybel/resources 2020-09-20T17:54:50,998 copying build/lib/pybel/language.py -> build/bdist.linux-armv7l/wheel/pybel 2020-09-20T17:54:51,003 creating build/bdist.linux-armv7l/wheel/pybel/examples 2020-09-20T17:54:51,005 copying build/lib/pybel/examples/homology_example.py -> build/bdist.linux-armv7l/wheel/pybel/examples 2020-09-20T17:54:51,009 copying build/lib/pybel/examples/sialic_acid_example.py -> build/bdist.linux-armv7l/wheel/pybel/examples 2020-09-20T17:54:51,013 copying build/lib/pybel/examples/statin_example.py -> build/bdist.linux-armv7l/wheel/pybel/examples 2020-09-20T17:54:51,019 copying build/lib/pybel/examples/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/examples 2020-09-20T17:54:51,023 copying build/lib/pybel/examples/egf_example.py -> build/bdist.linux-armv7l/wheel/pybel/examples 2020-09-20T17:54:51,029 copying build/lib/pybel/examples/braf_example.py -> build/bdist.linux-armv7l/wheel/pybel/examples 2020-09-20T17:54:51,034 copying build/lib/pybel/constants.py -> build/bdist.linux-armv7l/wheel/pybel 2020-09-20T17:54:51,039 creating build/bdist.linux-armv7l/wheel/pybel/struct 2020-09-20T17:54:51,042 creating build/bdist.linux-armv7l/wheel/pybel/struct/mutation 2020-09-20T17:54:51,045 creating build/bdist.linux-armv7l/wheel/pybel/struct/mutation/expansion 2020-09-20T17:54:51,047 copying build/lib/pybel/struct/mutation/expansion/upstream.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation/expansion 2020-09-20T17:54:51,051 copying build/lib/pybel/struct/mutation/expansion/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation/expansion 2020-09-20T17:54:51,056 copying build/lib/pybel/struct/mutation/expansion/neighborhood.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation/expansion 2020-09-20T17:54:51,061 copying build/lib/pybel/struct/mutation/transfer.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation 2020-09-20T17:54:51,067 copying build/lib/pybel/struct/mutation/bound.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation 2020-09-20T17:54:51,071 copying build/lib/pybel/struct/mutation/metadata.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation 2020-09-20T17:54:51,077 creating build/bdist.linux-armv7l/wheel/pybel/struct/mutation/inference 2020-09-20T17:54:51,078 copying build/lib/pybel/struct/mutation/inference/protein_rna_origins.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation/inference 2020-09-20T17:54:51,082 copying build/lib/pybel/struct/mutation/inference/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation/inference 2020-09-20T17:54:51,085 copying build/lib/pybel/struct/mutation/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation 2020-09-20T17:54:51,089 creating build/bdist.linux-armv7l/wheel/pybel/struct/mutation/deletion 2020-09-20T17:54:51,091 copying build/lib/pybel/struct/mutation/deletion/protein_rna_origins.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation/deletion 2020-09-20T17:54:51,097 copying build/lib/pybel/struct/mutation/deletion/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation/deletion 2020-09-20T17:54:51,102 copying build/lib/pybel/struct/mutation/deletion/deletion.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation/deletion 2020-09-20T17:54:51,107 copying build/lib/pybel/struct/mutation/utils.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation 2020-09-20T17:54:51,113 creating build/bdist.linux-armv7l/wheel/pybel/struct/mutation/induction 2020-09-20T17:54:51,116 copying build/lib/pybel/struct/mutation/induction/upstream.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation/induction 2020-09-20T17:54:51,119 copying build/lib/pybel/struct/mutation/induction/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation/induction 2020-09-20T17:54:51,122 copying build/lib/pybel/struct/mutation/induction/utils.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation/induction 2020-09-20T17:54:51,126 creating build/bdist.linux-armv7l/wheel/pybel/struct/mutation/collapse 2020-09-20T17:54:51,128 copying build/lib/pybel/struct/mutation/collapse/collapse.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation/collapse 2020-09-20T17:54:51,132 copying build/lib/pybel/struct/mutation/collapse/protein_rna_origins.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation/collapse 2020-09-20T17:54:51,135 copying build/lib/pybel/struct/mutation/collapse/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation/collapse 2020-09-20T17:54:51,142 creating build/bdist.linux-armv7l/wheel/pybel/struct/pipeline 2020-09-20T17:54:51,144 copying build/lib/pybel/struct/pipeline/decorators.py -> build/bdist.linux-armv7l/wheel/pybel/struct/pipeline 2020-09-20T17:54:51,151 copying build/lib/pybel/struct/pipeline/pipeline.py -> build/bdist.linux-armv7l/wheel/pybel/struct/pipeline 2020-09-20T17:54:51,159 copying build/lib/pybel/struct/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/struct/pipeline 2020-09-20T17:54:51,164 copying build/lib/pybel/struct/pipeline/exc.py -> build/bdist.linux-armv7l/wheel/pybel/struct/pipeline 2020-09-20T17:54:51,170 copying build/lib/pybel/struct/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/struct 2020-09-20T17:54:51,175 copying build/lib/pybel/struct/utils.py -> build/bdist.linux-armv7l/wheel/pybel/struct 2020-09-20T17:54:51,180 copying build/lib/pybel/struct/operations.py -> build/bdist.linux-armv7l/wheel/pybel/struct 2020-09-20T17:54:51,187 copying build/lib/pybel/struct/graph.py -> build/bdist.linux-armv7l/wheel/pybel/struct 2020-09-20T17:54:51,195 creating build/bdist.linux-armv7l/wheel/pybel/struct/grouping 2020-09-20T17:54:51,198 copying build/lib/pybel/struct/grouping/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/struct/grouping 2020-09-20T17:54:51,204 copying build/lib/pybel/struct/grouping/annotations.py -> build/bdist.linux-armv7l/wheel/pybel/struct/grouping 2020-09-20T17:54:51,210 creating build/bdist.linux-armv7l/wheel/pybel/struct/summary 2020-09-20T17:54:51,212 copying build/lib/pybel/struct/summary/edge_summary.py -> build/bdist.linux-armv7l/wheel/pybel/struct/summary 2020-09-20T17:54:51,218 copying build/lib/pybel/struct/summary/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/struct/summary 2020-09-20T17:54:51,222 copying build/lib/pybel/struct/summary/provenance.py -> build/bdist.linux-armv7l/wheel/pybel/struct/summary 2020-09-20T17:54:51,225 copying build/lib/pybel/struct/summary/errors.py -> build/bdist.linux-armv7l/wheel/pybel/struct/summary 2020-09-20T17:54:51,228 copying build/lib/pybel/struct/summary/node_summary.py -> build/bdist.linux-armv7l/wheel/pybel/struct/summary 2020-09-20T17:54:51,232 creating build/bdist.linux-armv7l/wheel/pybel/struct/filters 2020-09-20T17:54:51,234 copying build/lib/pybel/struct/filters/node_selection.py -> build/bdist.linux-armv7l/wheel/pybel/struct/filters 2020-09-20T17:54:51,237 copying build/lib/pybel/struct/filters/edge_predicate_builders.py -> build/bdist.linux-armv7l/wheel/pybel/struct/filters 2020-09-20T17:54:51,242 copying build/lib/pybel/struct/filters/edge_predicates.py -> build/bdist.linux-armv7l/wheel/pybel/struct/filters 2020-09-20T17:54:51,247 copying build/lib/pybel/struct/filters/node_predicates.py -> build/bdist.linux-armv7l/wheel/pybel/struct/filters 2020-09-20T17:54:51,254 copying build/lib/pybel/struct/filters/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/struct/filters 2020-09-20T17:54:51,259 copying build/lib/pybel/struct/filters/utils.py -> build/bdist.linux-armv7l/wheel/pybel/struct/filters 2020-09-20T17:54:51,264 copying build/lib/pybel/struct/filters/node_predicate_builders.py -> build/bdist.linux-armv7l/wheel/pybel/struct/filters 2020-09-20T17:54:51,269 copying build/lib/pybel/struct/filters/node_filters.py -> build/bdist.linux-armv7l/wheel/pybel/struct/filters 2020-09-20T17:54:51,275 copying build/lib/pybel/struct/filters/edge_filters.py -> build/bdist.linux-armv7l/wheel/pybel/struct/filters 2020-09-20T17:54:51,280 copying build/lib/pybel/exceptions.py -> build/bdist.linux-armv7l/wheel/pybel 2020-09-20T17:54:51,283 copying build/lib/pybel/cli.py -> build/bdist.linux-armv7l/wheel/pybel 2020-09-20T17:54:51,287 running install_egg_info 2020-09-20T17:54:51,305 Copying src/PyBEL.egg-info to build/bdist.linux-armv7l/wheel/PyBEL-0.11.9-py3.5.egg-info 2020-09-20T17:54:51,329 running install_scripts 2020-09-20T17:54:51,534 creating build/bdist.linux-armv7l/wheel/PyBEL-0.11.9.dist-info/WHEEL 2020-09-20T17:54:52,351 Building wheel for pybel (setup.py): finished with status 'done' 2020-09-20T17:54:52,358 Created wheel for pybel: filename=PyBEL-0.11.9-py2.py3-none-any.whl size=274004 sha256=47c26bbfb3c9302d246327957b723babe4e43dceedb2df51b7f185ce604da098 2020-09-20T17:54:52,359 Stored in directory: /tmp/pip-ephem-wheel-cache-xkp5ub5a/wheels/00/26/db/b343ec4405c564dbe9f8902cb930d111b7b95d8b42faf61696 2020-09-20T17:54:52,362 Successfully built pybel 2020-09-20T17:54:52,520 Removed build tracker: '/tmp/pip-req-tracker-1e6ivnij'