2020-09-20T17:55:51,577 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. 2020-09-20T17:55:52,258 Created temporary directory: /tmp/pip-ephem-wheel-cache-k4kh1glj 2020-09-20T17:55:52,263 Created temporary directory: /tmp/pip-req-tracker-ux8jyqw3 2020-09-20T17:55:52,264 Initialized build tracking at /tmp/pip-req-tracker-ux8jyqw3 2020-09-20T17:55:52,265 Created build tracker: /tmp/pip-req-tracker-ux8jyqw3 2020-09-20T17:55:52,265 Entered build tracker: /tmp/pip-req-tracker-ux8jyqw3 2020-09-20T17:55:52,267 Created temporary directory: /tmp/pip-wheel-7wuruft9 2020-09-20T17:55:52,285 1 location(s) to search for versions of pybel: 2020-09-20T17:55:52,285 * https://pypi.org/simple/pybel/ 2020-09-20T17:55:52,285 Fetching project page and analyzing links: https://pypi.org/simple/pybel/ 2020-09-20T17:55:52,287 Getting page https://pypi.org/simple/pybel/ 2020-09-20T17:55:52,291 Found index url 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https://files.pythonhosted.org/packages/36/71/83124123a048b65e05b5640f993cf242ed726bb30d9f7f02f812e68ddbd3/pybel-0.14.0.tar.gz#sha256=85da4bc8db77f2fdfc322d2e9164d0334f68afa96c2596ba13cc3b5a5c632c5e (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.0 2020-09-20T17:55:52,868 Found link https://files.pythonhosted.org/packages/e9/0e/a7f15ed8c8b075f6320c3fe36787c3513e94bbbfc6e05a251db5c480641a/pybel-0.14.1-py3-none-any.whl#sha256=518d091cae1e7ae8ea72aedb328c9dced772ee08a3e5f586c8b1600aa55e7019 (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.1 2020-09-20T17:55:52,869 Found link https://files.pythonhosted.org/packages/95/7c/e3769712d5d31fb85eadda8585c12f25ad62b25ff6b96ab1c44d8c0e4957/pybel-0.14.1.tar.gz#sha256=b3cddf554d5e94835d20b88fc419a2026cc680d0de04933577dbdbe74e7136d8 (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.1 2020-09-20T17:55:52,871 Found link https://files.pythonhosted.org/packages/35/b2/1a4625e7e590948b2d3302eedf7d833e6f07377010da6b879954049cb6b2/pybel-0.14.2-py3-none-any.whl#sha256=3c9521db9ba5f0166bf0589d194f84ccaa383542a12256fa75bed27ca6de72af (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.2 2020-09-20T17:55:52,873 Found link https://files.pythonhosted.org/packages/7f/68/404dd8290f1bca9a3d6e1f886263d0461fbba25e067b861d167f5119e8fa/pybel-0.14.2.tar.gz#sha256=82d52a9f0b3f1a7ce63e2b208b7fab0ef79aa015baf2d7229896580d499b35de (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.2 2020-09-20T17:55:52,875 Found link https://files.pythonhosted.org/packages/98/cc/f2c7002d4c5866abc4743340160aa36220bad53137c4cda6b000c24823e6/pybel-0.14.3-py3-none-any.whl#sha256=7175454b3d84aeebd28919d697b652297537b0985a71a5a02890e596405c78c1 (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.3 2020-09-20T17:55:52,877 Found link https://files.pythonhosted.org/packages/4e/96/5724c3292bd73bdc7ead9969f3b8c8ed64eb2e22445330134e8a9bd1a7bf/pybel-0.14.3.tar.gz#sha256=ac3abffbb08b1b6ae41804a95e368a08623e900eafafa7bbf573a42fa1ced7a7 (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.3 2020-09-20T17:55:52,879 Found link https://files.pythonhosted.org/packages/93/36/4ab480a768c62496952f8b3f90a98ef6116daf4960ae2d3ddd4403d2ec08/pybel-0.14.4-py3-none-any.whl#sha256=c6bc50b40c289fbfb283a12e2d739b3586b5f1d0c80b2ed3553326f43320dad6 (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.4 2020-09-20T17:55:52,881 Found link https://files.pythonhosted.org/packages/7f/53/5b7085c497e8d6834dca0febe2ca095bfa351e88cbb6d78451c9c55a33d3/pybel-0.14.4.tar.gz#sha256=b77b3445328fb2d1ceb3578c948e6be25d49158c64e801dce1fd7445760694b0 (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.4 2020-09-20T17:55:52,883 Found link https://files.pythonhosted.org/packages/41/ea/ac7235ea4e9dc757e5713e3d176758532c44bba9d5da237517b2401b11cb/pybel-0.14.5-py3-none-any.whl#sha256=4baa69a3e44217f0c7fdb1c3d9307ccba6027b7f3f4dfb4a152731e9865b4d2d (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.5 2020-09-20T17:55:52,885 Found link https://files.pythonhosted.org/packages/24/cc/74fc9c23de564cbccc038aa90d4e68c9040ee497a4f2ad2664dd66336f66/pybel-0.14.5.tar.gz#sha256=deb77bf32cae3a919a9c157635804bdef2c42cbb0e0883dd015b05d0ce3149a1 (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.5 2020-09-20T17:55:52,887 Found link https://files.pythonhosted.org/packages/79/3e/781d44a604c6e062c28a767fe7b62bf478f6ca24d4af991de3ec3e8def2e/pybel-0.14.6-py3-none-any.whl#sha256=cdb264e90aba045f4ec4ba0dab4d3a4aaea0caf51cda3c6fc596853717468070 (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.6 2020-09-20T17:55:52,889 Found link https://files.pythonhosted.org/packages/8b/69/4615da1ecd37bffd6bca6f0791e859b29e00010da725d7c67a29ca10b31d/pybel-0.14.6.tar.gz#sha256=73e41f4bec440233a76e37304fde196c83b5f23fb910c9de38337914233aa869 (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.6 2020-09-20T17:55:52,891 Found link https://files.pythonhosted.org/packages/82/ff/44e9d578b6bf1b04ab8e0dfba410a4c40e2a771c704db0798cdd6a12cb0e/pybel-0.14.7-py3-none-any.whl#sha256=89a27adbdf292742fce4ee2dce5f36c1a71db0c7ad0745d040d9acd26f344992 (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.7 2020-09-20T17:55:52,893 Found link https://files.pythonhosted.org/packages/9c/57/71ce92c8a7e138669f0b98694d279352665048c4191ae7e49ad95b6898cd/pybel-0.14.7.tar.gz#sha256=390109dc141f3498a9e97ea2e9525845caab65c6df9e8c79a0542cec2352feb1 (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.7 2020-09-20T17:55:52,895 Found link https://files.pythonhosted.org/packages/9b/36/f4a51624d302a2da8b1468434ea226293bde042cf556d8ceb93ed337cd10/pybel-0.14.8-py3-none-any.whl#sha256=4fa04fba17356801469105393217a10b25901384a652697f0c88a7550497ac52 (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.8 2020-09-20T17:55:52,896 Found link https://files.pythonhosted.org/packages/48/10/6d98e6204b6f3dd712b7e27b69bffeeea3fb18c371fb6e78a4985d44e2bb/pybel-0.14.8.tar.gz#sha256=d35df841b1497416bcf0d4fd91622be66f029e35270107bca5a0e44d38620bdd (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.8 2020-09-20T17:55:52,898 Found link https://files.pythonhosted.org/packages/67/0f/1e84d1c37e1c5e09b465731d63029801c790a172bcd95202eb1da14a6c5c/pybel-0.14.9-py3-none-any.whl#sha256=d1ea8a5c9f26d65f3e3472dff732112b722e6149ed9d95a8119182a4973eb966 (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.9 2020-09-20T17:55:52,900 Found link https://files.pythonhosted.org/packages/78/d6/c8ce8e7937f138ea59e3c7bfaf3e7f7fe613beaa908dfa105c7576d9b387/pybel-0.14.9.tar.gz#sha256=082a4480fd576d5287ffa84505eb80f5840daef84d9f764ace466eb0b49f3230 (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.9 2020-09-20T17:55:52,902 Found link https://files.pythonhosted.org/packages/8b/bd/106a7178cb860d1a36bac3520c96f3c9509c8f22586fe1cd0a58605bff13/pybel-0.14.10-py3-none-any.whl#sha256=36cb32d5261077aae2573d3b1d05544174a69e16e5babf25f9d9514e5c41cd26 (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.10 2020-09-20T17:55:52,904 Found link https://files.pythonhosted.org/packages/09/79/2051b18f36164aaace2cc09ea2ecfabe6cdaaac0003721ce4f297348023a/pybel-0.14.10.tar.gz#sha256=47992711ffea0fa7870d2be733a1a9248dfe2b3867ff2e616899bd0ffbc667b9 (from https://pypi.org/simple/pybel/) (requires-python:>=3.5), version: 0.14.10 2020-09-20T17:55:52,961 Given no hashes to check 1 links for project 'pybel': discarding no candidates 2020-09-20T17:55:52,966 Using version 0.11.10 (newest of versions: 0.11.10) 2020-09-20T17:55:52,975 Collecting pybel==0.11.10 2020-09-20T17:55:52,980 Created temporary directory: /tmp/pip-unpack-wcekxt35 2020-09-20T17:55:53,073 Downloading PyBEL-0.11.10.tar.gz (317 kB) 2020-09-20T17:55:54,998 Added pybel==0.11.10 from https://files.pythonhosted.org/packages/07/1c/241d0f64b4d3101e26d785802d518ba09293310ee7a90361eb0a44a7ac3c/PyBEL-0.11.10.tar.gz#sha256=94aa9b03dcf7c8222591f74a24d344bee45b8b6cbd9a84dfae8201e8dc7a21ba to build tracker '/tmp/pip-req-tracker-ux8jyqw3' 2020-09-20T17:55:55,001 Running setup.py (path:/tmp/pip-wheel-7wuruft9/pybel/setup.py) egg_info for package pybel 2020-09-20T17:55:55,004 Created temporary directory: /tmp/pip-pip-egg-info-tks0uo9x 2020-09-20T17:55:55,005 Running command python setup.py egg_info 2020-09-20T17:55:57,434 running egg_info 2020-09-20T17:55:57,441 creating /tmp/pip-pip-egg-info-tks0uo9x/PyBEL.egg-info 2020-09-20T17:55:57,443 writing requirements to /tmp/pip-pip-egg-info-tks0uo9x/PyBEL.egg-info/requires.txt 2020-09-20T17:55:57,446 writing top-level names to /tmp/pip-pip-egg-info-tks0uo9x/PyBEL.egg-info/top_level.txt 2020-09-20T17:55:57,449 writing entry points to /tmp/pip-pip-egg-info-tks0uo9x/PyBEL.egg-info/entry_points.txt 2020-09-20T17:55:57,451 writing /tmp/pip-pip-egg-info-tks0uo9x/PyBEL.egg-info/PKG-INFO 2020-09-20T17:55:57,456 writing dependency_links to /tmp/pip-pip-egg-info-tks0uo9x/PyBEL.egg-info/dependency_links.txt 2020-09-20T17:55:57,461 writing manifest file '/tmp/pip-pip-egg-info-tks0uo9x/PyBEL.egg-info/SOURCES.txt' 2020-09-20T17:55:57,838 reading manifest file '/tmp/pip-pip-egg-info-tks0uo9x/PyBEL.egg-info/SOURCES.txt' 2020-09-20T17:55:57,841 reading manifest template 'MANIFEST.in' 2020-09-20T17:55:57,888 no previously-included directories found matching 'scripts' 2020-09-20T17:55:57,950 warning: no files found matching '*.bel' under directory 'src/pybel/testing/bel' 2020-09-20T17:55:57,952 warning: no files found matching '*.belanno' under directory 'src/pybel/testing/belanno' 2020-09-20T17:55:57,953 warning: no files found matching '*.belns' under directory 'src/pybel/testing/belns' 2020-09-20T17:55:57,962 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2020-09-20T17:55:57,966 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2020-09-20T17:55:57,969 warning: no previously-included files matching '*.so' found anywhere in distribution 2020-09-20T17:55:57,972 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2020-09-20T17:55:57,975 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2020-09-20T17:55:57,979 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2020-09-20T17:55:57,981 warning: no previously-included files found matching '.bumpversion.cfg' 2020-09-20T17:55:58,018 writing manifest file '/tmp/pip-pip-egg-info-tks0uo9x/PyBEL.egg-info/SOURCES.txt' 2020-09-20T17:55:58,163 Source in /tmp/pip-wheel-7wuruft9/pybel has version 0.11.10, which satisfies requirement pybel==0.11.10 from https://files.pythonhosted.org/packages/07/1c/241d0f64b4d3101e26d785802d518ba09293310ee7a90361eb0a44a7ac3c/PyBEL-0.11.10.tar.gz#sha256=94aa9b03dcf7c8222591f74a24d344bee45b8b6cbd9a84dfae8201e8dc7a21ba 2020-09-20T17:55:58,165 Removed pybel==0.11.10 from https://files.pythonhosted.org/packages/07/1c/241d0f64b4d3101e26d785802d518ba09293310ee7a90361eb0a44a7ac3c/PyBEL-0.11.10.tar.gz#sha256=94aa9b03dcf7c8222591f74a24d344bee45b8b6cbd9a84dfae8201e8dc7a21ba from build tracker '/tmp/pip-req-tracker-ux8jyqw3' 2020-09-20T17:55:58,171 Building wheels for collected packages: pybel 2020-09-20T17:55:58,181 Created temporary directory: /tmp/pip-wheel-0om7mmzu 2020-09-20T17:55:58,182 Building wheel for pybel (setup.py): started 2020-09-20T17:55:58,182 Destination directory: /tmp/pip-wheel-0om7mmzu 2020-09-20T17:55:58,183 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-7wuruft9/pybel/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-7wuruft9/pybel/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-0om7mmzu 2020-09-20T17:56:00,587 running bdist_wheel 2020-09-20T17:56:00,603 running build 2020-09-20T17:56:00,604 running build_py 2020-09-20T17:56:00,940 creating build 2020-09-20T17:56:00,941 creating build/lib 2020-09-20T17:56:00,943 creating build/lib/pybel 2020-09-20T17:56:00,946 copying src/pybel/__main__.py -> build/lib/pybel 2020-09-20T17:56:00,950 copying src/pybel/utils.py -> build/lib/pybel 2020-09-20T17:56:00,957 copying src/pybel/exceptions.py -> build/lib/pybel 2020-09-20T17:56:00,963 copying src/pybel/constants.py -> build/lib/pybel 2020-09-20T17:56:00,972 copying src/pybel/tokens.py -> build/lib/pybel 2020-09-20T17:56:00,979 copying src/pybel/canonicalize.py -> build/lib/pybel 2020-09-20T17:56:00,987 copying src/pybel/cli.py -> build/lib/pybel 2020-09-20T17:56:00,994 copying src/pybel/__init__.py -> build/lib/pybel 2020-09-20T17:56:00,1000 copying src/pybel/language.py -> build/lib/pybel 2020-09-20T17:56:01,009 creating build/lib/pybel/struct 2020-09-20T17:56:01,012 copying src/pybel/struct/utils.py -> build/lib/pybel/struct 2020-09-20T17:56:01,019 copying src/pybel/struct/operations.py -> build/lib/pybel/struct 2020-09-20T17:56:01,025 copying src/pybel/struct/__init__.py -> build/lib/pybel/struct 2020-09-20T17:56:01,031 copying src/pybel/struct/graph.py -> build/lib/pybel/struct 2020-09-20T17:56:01,044 creating build/lib/pybel/dsl 2020-09-20T17:56:01,046 copying src/pybel/dsl/nodes.py -> build/lib/pybel/dsl 2020-09-20T17:56:01,055 copying src/pybel/dsl/namespaces.py -> build/lib/pybel/dsl 2020-09-20T17:56:01,061 copying src/pybel/dsl/utils.py -> build/lib/pybel/dsl 2020-09-20T17:56:01,066 copying src/pybel/dsl/exc.py -> build/lib/pybel/dsl 2020-09-20T17:56:01,071 copying src/pybel/dsl/__init__.py -> build/lib/pybel/dsl 2020-09-20T17:56:01,077 copying src/pybel/dsl/edges.py -> build/lib/pybel/dsl 2020-09-20T17:56:01,082 creating build/lib/pybel/examples 2020-09-20T17:56:01,084 copying src/pybel/examples/sialic_acid_example.py -> build/lib/pybel/examples 2020-09-20T17:56:01,089 copying src/pybel/examples/egf_example.py -> build/lib/pybel/examples 2020-09-20T17:56:01,094 copying src/pybel/examples/__init__.py -> build/lib/pybel/examples 2020-09-20T17:56:01,099 copying src/pybel/examples/homology_example.py -> build/lib/pybel/examples 2020-09-20T17:56:01,105 copying src/pybel/examples/statin_example.py -> build/lib/pybel/examples 2020-09-20T17:56:01,110 copying src/pybel/examples/braf_example.py -> build/lib/pybel/examples 2020-09-20T17:56:01,120 creating build/lib/pybel/manager 2020-09-20T17:56:01,122 copying src/pybel/manager/models.py -> build/lib/pybel/manager 2020-09-20T17:56:01,130 copying src/pybel/manager/utils.py -> build/lib/pybel/manager 2020-09-20T17:56:01,134 copying src/pybel/manager/base_manager.py -> build/lib/pybel/manager 2020-09-20T17:56:01,138 copying src/pybel/manager/exc.py -> build/lib/pybel/manager 2020-09-20T17:56:01,144 copying src/pybel/manager/database_io.py -> build/lib/pybel/manager 2020-09-20T17:56:01,149 copying src/pybel/manager/make_json_serializable.py -> build/lib/pybel/manager 2020-09-20T17:56:01,154 copying src/pybel/manager/__init__.py -> build/lib/pybel/manager 2020-09-20T17:56:01,159 copying src/pybel/manager/query_manager.py -> build/lib/pybel/manager 2020-09-20T17:56:01,165 copying src/pybel/manager/lookup_manager.py -> build/lib/pybel/manager 2020-09-20T17:56:01,169 copying src/pybel/manager/defaults.py -> build/lib/pybel/manager 2020-09-20T17:56:01,174 copying src/pybel/manager/cache_manager.py -> build/lib/pybel/manager 2020-09-20T17:56:01,185 copying src/pybel/manager/citation_utils.py -> build/lib/pybel/manager 2020-09-20T17:56:01,194 creating build/lib/pybel/resources 2020-09-20T17:56:01,196 copying src/pybel/resources/utils.py -> build/lib/pybel/resources 2020-09-20T17:56:01,202 copying src/pybel/resources/exc.py -> build/lib/pybel/resources 2020-09-20T17:56:01,207 copying src/pybel/resources/constants.py -> build/lib/pybel/resources 2020-09-20T17:56:01,212 copying src/pybel/resources/__init__.py -> build/lib/pybel/resources 2020-09-20T17:56:01,217 copying src/pybel/resources/document.py -> build/lib/pybel/resources 2020-09-20T17:56:01,226 creating build/lib/pybel/testing 2020-09-20T17:56:01,229 copying src/pybel/testing/utils.py -> build/lib/pybel/testing 2020-09-20T17:56:01,235 copying src/pybel/testing/cases.py -> build/lib/pybel/testing 2020-09-20T17:56:01,241 copying src/pybel/testing/constants.py -> build/lib/pybel/testing 2020-09-20T17:56:01,245 copying src/pybel/testing/__init__.py -> build/lib/pybel/testing 2020-09-20T17:56:01,249 copying src/pybel/testing/mocks.py -> build/lib/pybel/testing 2020-09-20T17:56:01,255 creating build/lib/pybel/parser 2020-09-20T17:56:01,257 copying src/pybel/parser/baseparser.py -> build/lib/pybel/parser 2020-09-20T17:56:01,261 copying src/pybel/parser/parse_control.py -> build/lib/pybel/parser 2020-09-20T17:56:01,268 copying src/pybel/parser/parse_bel.py -> build/lib/pybel/parser 2020-09-20T17:56:01,277 copying src/pybel/parser/utils.py -> build/lib/pybel/parser 2020-09-20T17:56:01,283 copying src/pybel/parser/exc.py -> build/lib/pybel/parser 2020-09-20T17:56:01,290 copying src/pybel/parser/__init__.py -> build/lib/pybel/parser 2020-09-20T17:56:01,295 copying src/pybel/parser/parse_metadata.py -> build/lib/pybel/parser 2020-09-20T17:56:01,302 copying src/pybel/parser/parse_identifier.py -> build/lib/pybel/parser 2020-09-20T17:56:01,312 creating build/lib/pybel/io 2020-09-20T17:56:01,315 copying src/pybel/io/jgif.py -> build/lib/pybel/io 2020-09-20T17:56:01,322 copying src/pybel/io/utils.py -> build/lib/pybel/io 2020-09-20T17:56:01,326 copying src/pybel/io/exc.py -> build/lib/pybel/io 2020-09-20T17:56:01,330 copying src/pybel/io/extras.py -> build/lib/pybel/io 2020-09-20T17:56:01,334 copying src/pybel/io/neo4j.py -> build/lib/pybel/io 2020-09-20T17:56:01,338 copying src/pybel/io/nodelink.py -> build/lib/pybel/io 2020-09-20T17:56:01,342 copying src/pybel/io/__init__.py -> build/lib/pybel/io 2020-09-20T17:56:01,347 copying src/pybel/io/indra.py -> build/lib/pybel/io 2020-09-20T17:56:01,353 copying src/pybel/io/line_utils.py -> build/lib/pybel/io 2020-09-20T17:56:01,360 copying src/pybel/io/lines.py -> build/lib/pybel/io 2020-09-20T17:56:01,365 copying src/pybel/io/web.py -> build/lib/pybel/io 2020-09-20T17:56:01,371 copying src/pybel/io/gpickle.py -> build/lib/pybel/io 2020-09-20T17:56:01,378 creating build/lib/pybel/struct/grouping 2020-09-20T17:56:01,380 copying src/pybel/struct/grouping/annotations.py -> build/lib/pybel/struct/grouping 2020-09-20T17:56:01,386 copying src/pybel/struct/grouping/__init__.py -> build/lib/pybel/struct/grouping 2020-09-20T17:56:01,391 creating build/lib/pybel/struct/mutation 2020-09-20T17:56:01,393 copying src/pybel/struct/mutation/induction_expansion.py -> build/lib/pybel/struct/mutation 2020-09-20T17:56:01,398 copying src/pybel/struct/mutation/transfer.py -> build/lib/pybel/struct/mutation 2020-09-20T17:56:01,402 copying src/pybel/struct/mutation/utils.py -> build/lib/pybel/struct/mutation 2020-09-20T17:56:01,407 copying src/pybel/struct/mutation/metadata.py -> build/lib/pybel/struct/mutation 2020-09-20T17:56:01,413 copying src/pybel/struct/mutation/__init__.py -> build/lib/pybel/struct/mutation 2020-09-20T17:56:01,420 copying src/pybel/struct/mutation/bound.py -> build/lib/pybel/struct/mutation 2020-09-20T17:56:01,426 creating build/lib/pybel/struct/summary 2020-09-20T17:56:01,428 copying src/pybel/struct/summary/edge_summary.py -> build/lib/pybel/struct/summary 2020-09-20T17:56:01,433 copying src/pybel/struct/summary/provenance.py -> build/lib/pybel/struct/summary 2020-09-20T17:56:01,437 copying src/pybel/struct/summary/__init__.py -> build/lib/pybel/struct/summary 2020-09-20T17:56:01,441 copying src/pybel/struct/summary/errors.py -> build/lib/pybel/struct/summary 2020-09-20T17:56:01,446 copying src/pybel/struct/summary/node_summary.py -> build/lib/pybel/struct/summary 2020-09-20T17:56:01,454 creating build/lib/pybel/struct/pipeline 2020-09-20T17:56:01,456 copying src/pybel/struct/pipeline/exc.py -> build/lib/pybel/struct/pipeline 2020-09-20T17:56:01,462 copying src/pybel/struct/pipeline/__init__.py -> build/lib/pybel/struct/pipeline 2020-09-20T17:56:01,467 copying src/pybel/struct/pipeline/decorators.py -> build/lib/pybel/struct/pipeline 2020-09-20T17:56:01,472 copying src/pybel/struct/pipeline/pipeline.py -> build/lib/pybel/struct/pipeline 2020-09-20T17:56:01,479 creating build/lib/pybel/struct/filters 2020-09-20T17:56:01,481 copying src/pybel/struct/filters/edge_predicates.py -> build/lib/pybel/struct/filters 2020-09-20T17:56:01,487 copying src/pybel/struct/filters/utils.py -> build/lib/pybel/struct/filters 2020-09-20T17:56:01,492 copying src/pybel/struct/filters/node_selection.py -> build/lib/pybel/struct/filters 2020-09-20T17:56:01,497 copying src/pybel/struct/filters/node_filters.py -> build/lib/pybel/struct/filters 2020-09-20T17:56:01,504 copying src/pybel/struct/filters/__init__.py -> build/lib/pybel/struct/filters 2020-09-20T17:56:01,508 copying src/pybel/struct/filters/node_predicate_builders.py -> build/lib/pybel/struct/filters 2020-09-20T17:56:01,513 copying src/pybel/struct/filters/node_predicates.py -> build/lib/pybel/struct/filters 2020-09-20T17:56:01,518 copying src/pybel/struct/filters/edge_predicate_builders.py -> build/lib/pybel/struct/filters 2020-09-20T17:56:01,523 copying src/pybel/struct/filters/edge_filters.py -> build/lib/pybel/struct/filters 2020-09-20T17:56:01,532 creating build/lib/pybel/struct/mutation/induction 2020-09-20T17:56:01,534 copying src/pybel/struct/mutation/induction/annotations.py -> build/lib/pybel/struct/mutation/induction 2020-09-20T17:56:01,540 copying src/pybel/struct/mutation/induction/citation.py -> build/lib/pybel/struct/mutation/induction 2020-09-20T17:56:01,546 copying src/pybel/struct/mutation/induction/paths.py -> build/lib/pybel/struct/mutation/induction 2020-09-20T17:56:01,550 copying src/pybel/struct/mutation/induction/utils.py -> build/lib/pybel/struct/mutation/induction 2020-09-20T17:56:01,554 copying src/pybel/struct/mutation/induction/neighborhood.py -> build/lib/pybel/struct/mutation/induction 2020-09-20T17:56:01,558 copying src/pybel/struct/mutation/induction/__init__.py -> build/lib/pybel/struct/mutation/induction 2020-09-20T17:56:01,562 copying src/pybel/struct/mutation/induction/upstream.py -> build/lib/pybel/struct/mutation/induction 2020-09-20T17:56:01,567 creating build/lib/pybel/struct/mutation/expansion 2020-09-20T17:56:01,569 copying src/pybel/struct/mutation/expansion/neighborhood.py -> build/lib/pybel/struct/mutation/expansion 2020-09-20T17:56:01,576 copying src/pybel/struct/mutation/expansion/__init__.py -> build/lib/pybel/struct/mutation/expansion 2020-09-20T17:56:01,581 copying src/pybel/struct/mutation/expansion/upstream.py -> build/lib/pybel/struct/mutation/expansion 2020-09-20T17:56:01,588 creating build/lib/pybel/struct/mutation/deletion 2020-09-20T17:56:01,590 copying src/pybel/struct/mutation/deletion/__init__.py -> build/lib/pybel/struct/mutation/deletion 2020-09-20T17:56:01,594 copying src/pybel/struct/mutation/deletion/deletion.py -> build/lib/pybel/struct/mutation/deletion 2020-09-20T17:56:01,598 copying src/pybel/struct/mutation/deletion/protein_rna_origins.py -> build/lib/pybel/struct/mutation/deletion 2020-09-20T17:56:01,604 creating build/lib/pybel/struct/mutation/inference 2020-09-20T17:56:01,605 copying src/pybel/struct/mutation/inference/__init__.py -> build/lib/pybel/struct/mutation/inference 2020-09-20T17:56:01,610 copying src/pybel/struct/mutation/inference/protein_rna_origins.py -> build/lib/pybel/struct/mutation/inference 2020-09-20T17:56:01,618 creating build/lib/pybel/struct/mutation/collapse 2020-09-20T17:56:01,620 copying src/pybel/struct/mutation/collapse/collapse.py -> build/lib/pybel/struct/mutation/collapse 2020-09-20T17:56:01,626 copying src/pybel/struct/mutation/collapse/__init__.py -> build/lib/pybel/struct/mutation/collapse 2020-09-20T17:56:01,631 copying src/pybel/struct/mutation/collapse/protein_rna_origins.py -> build/lib/pybel/struct/mutation/collapse 2020-09-20T17:56:01,636 creating build/lib/pybel/resources/definitions 2020-09-20T17:56:01,638 copying src/pybel/resources/definitions/write_utils.py -> build/lib/pybel/resources/definitions 2020-09-20T17:56:01,642 copying src/pybel/resources/definitions/definitions.py -> build/lib/pybel/resources/definitions 2020-09-20T17:56:01,646 copying src/pybel/resources/definitions/__init__.py -> build/lib/pybel/resources/definitions 2020-09-20T17:56:01,651 copying src/pybel/resources/definitions/namespace.py -> build/lib/pybel/resources/definitions 2020-09-20T17:56:01,657 copying src/pybel/resources/definitions/annotation.py -> build/lib/pybel/resources/definitions 2020-09-20T17:56:01,667 creating build/lib/pybel/parser/modifiers 2020-09-20T17:56:01,669 copying src/pybel/parser/modifiers/protein_modification.py -> build/lib/pybel/parser/modifiers 2020-09-20T17:56:01,675 copying src/pybel/parser/modifiers/location.py -> build/lib/pybel/parser/modifiers 2020-09-20T17:56:01,678 copying src/pybel/parser/modifiers/fusion.py -> build/lib/pybel/parser/modifiers 2020-09-20T17:56:01,683 copying src/pybel/parser/modifiers/protein_substitution.py -> build/lib/pybel/parser/modifiers 2020-09-20T17:56:01,687 copying src/pybel/parser/modifiers/truncation.py -> build/lib/pybel/parser/modifiers 2020-09-20T17:56:01,692 copying src/pybel/parser/modifiers/constants.py -> build/lib/pybel/parser/modifiers 2020-09-20T17:56:01,697 copying src/pybel/parser/modifiers/gene_modification.py -> build/lib/pybel/parser/modifiers 2020-09-20T17:56:01,703 copying src/pybel/parser/modifiers/__init__.py -> build/lib/pybel/parser/modifiers 2020-09-20T17:56:01,708 copying src/pybel/parser/modifiers/gene_substitution.py -> build/lib/pybel/parser/modifiers 2020-09-20T17:56:01,713 copying src/pybel/parser/modifiers/variant.py -> build/lib/pybel/parser/modifiers 2020-09-20T17:56:01,717 copying src/pybel/parser/modifiers/fragment.py -> build/lib/pybel/parser/modifiers 2020-09-20T17:56:01,721 running egg_info 2020-09-20T17:56:01,784 writing requirements to src/PyBEL.egg-info/requires.txt 2020-09-20T17:56:01,786 writing dependency_links to src/PyBEL.egg-info/dependency_links.txt 2020-09-20T17:56:01,790 writing top-level names to src/PyBEL.egg-info/top_level.txt 2020-09-20T17:56:01,792 writing entry points to src/PyBEL.egg-info/entry_points.txt 2020-09-20T17:56:01,795 writing src/PyBEL.egg-info/PKG-INFO 2020-09-20T17:56:01,854 reading manifest file 'src/PyBEL.egg-info/SOURCES.txt' 2020-09-20T17:56:01,873 reading manifest template 'MANIFEST.in' 2020-09-20T17:56:01,913 no previously-included directories found matching 'scripts' 2020-09-20T17:56:01,972 warning: no files found matching '*.bel' under directory 'src/pybel/testing/bel' 2020-09-20T17:56:01,973 warning: no files found matching '*.belanno' under directory 'src/pybel/testing/belanno' 2020-09-20T17:56:01,973 warning: no files found matching '*.belns' under directory 'src/pybel/testing/belns' 2020-09-20T17:56:01,979 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2020-09-20T17:56:01,984 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2020-09-20T17:56:01,989 warning: no previously-included files matching '*.so' found anywhere in distribution 2020-09-20T17:56:01,995 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2020-09-20T17:56:01,999 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2020-09-20T17:56:02,005 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2020-09-20T17:56:02,008 warning: no previously-included files found matching '.bumpversion.cfg' 2020-09-20T17:56:02,062 writing manifest file 'src/PyBEL.egg-info/SOURCES.txt' 2020-09-20T17:56:02,087 creating build/lib/pybel/testing/resources 2020-09-20T17:56:02,088 creating build/lib/pybel/testing/resources/bel 2020-09-20T17:56:02,092 copying src/pybel/testing/resources/bel/Cytotoxic T-cell Signaling-2.0-Hs.json -> build/lib/pybel/testing/resources/bel 2020-09-20T17:56:02,229 copying src/pybel/testing/resources/bel/isolated.bel -> build/lib/pybel/testing/resources/bel 2020-09-20T17:56:02,235 copying src/pybel/testing/resources/bel/misordered.bel -> build/lib/pybel/testing/resources/bel 2020-09-20T17:56:02,242 copying src/pybel/testing/resources/bel/slushy.bel -> build/lib/pybel/testing/resources/bel 2020-09-20T17:56:02,249 copying src/pybel/testing/resources/bel/test_bel.bel -> build/lib/pybel/testing/resources/bel 2020-09-20T17:56:02,255 copying src/pybel/testing/resources/bel/thorough.bel -> build/lib/pybel/testing/resources/bel 2020-09-20T17:56:02,262 creating build/lib/pybel/testing/resources/belanno 2020-09-20T17:56:02,264 copying src/pybel/testing/resources/belanno/cell-line.belanno -> build/lib/pybel/testing/resources/belanno 2020-09-20T17:56:02,271 copying src/pybel/testing/resources/belanno/confidence-1.0.0.belanno -> build/lib/pybel/testing/resources/belanno 2020-09-20T17:56:02,278 copying src/pybel/testing/resources/belanno/mesh-diseases.belanno -> build/lib/pybel/testing/resources/belanno 2020-09-20T17:56:02,283 copying src/pybel/testing/resources/belanno/species-taxonomy-id.belanno -> build/lib/pybel/testing/resources/belanno 2020-09-20T17:56:02,290 copying src/pybel/testing/resources/belanno/test_an_1.belanno -> build/lib/pybel/testing/resources/belanno 2020-09-20T17:56:02,295 creating build/lib/pybel/testing/resources/belns 2020-09-20T17:56:02,298 copying src/pybel/testing/resources/belns/chebi.belns -> build/lib/pybel/testing/resources/belns 2020-09-20T17:56:02,304 copying src/pybel/testing/resources/belns/disease-ontology.belns -> build/lib/pybel/testing/resources/belns 2020-09-20T17:56:02,311 copying src/pybel/testing/resources/belns/go-biological-process.belns -> build/lib/pybel/testing/resources/belns 2020-09-20T17:56:02,317 copying src/pybel/testing/resources/belns/go-cellular-component.belns -> build/lib/pybel/testing/resources/belns 2020-09-20T17:56:02,324 copying src/pybel/testing/resources/belns/hgnc-human-genes.belns -> build/lib/pybel/testing/resources/belns 2020-09-20T17:56:02,330 copying src/pybel/testing/resources/belns/mesh-diseases.belns -> build/lib/pybel/testing/resources/belns 2020-09-20T17:56:02,336 copying src/pybel/testing/resources/belns/test_nocache.belns -> build/lib/pybel/testing/resources/belns 2020-09-20T17:56:02,342 copying src/pybel/testing/resources/belns/test_ns_1.belns -> build/lib/pybel/testing/resources/belns 2020-09-20T17:56:02,348 copying src/pybel/testing/resources/belns/test_ns_1_updated.belns -> build/lib/pybel/testing/resources/belns 2020-09-20T17:56:02,355 copying src/pybel/testing/resources/belns/test_ns_2.belns -> build/lib/pybel/testing/resources/belns 2020-09-20T17:56:02,361 copying src/pybel/testing/resources/belns/test_ns_empty.belns -> build/lib/pybel/testing/resources/belns 2020-09-20T17:56:02,417 installing to build/bdist.linux-armv7l/wheel 2020-09-20T17:56:02,418 running install 2020-09-20T17:56:02,421 running install_lib 2020-09-20T17:56:02,429 creating build/bdist.linux-armv7l 2020-09-20T17:56:02,430 creating build/bdist.linux-armv7l/wheel 2020-09-20T17:56:02,435 creating build/bdist.linux-armv7l/wheel/pybel 2020-09-20T17:56:02,438 copying build/lib/pybel/__main__.py -> build/bdist.linux-armv7l/wheel/pybel 2020-09-20T17:56:02,445 creating build/bdist.linux-armv7l/wheel/pybel/struct 2020-09-20T17:56:02,449 creating build/bdist.linux-armv7l/wheel/pybel/struct/grouping 2020-09-20T17:56:02,452 copying build/lib/pybel/struct/grouping/annotations.py -> build/bdist.linux-armv7l/wheel/pybel/struct/grouping 2020-09-20T17:56:02,458 copying build/lib/pybel/struct/grouping/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/struct/grouping 2020-09-20T17:56:02,463 copying build/lib/pybel/struct/utils.py -> build/bdist.linux-armv7l/wheel/pybel/struct 2020-09-20T17:56:02,470 creating build/bdist.linux-armv7l/wheel/pybel/struct/mutation 2020-09-20T17:56:02,474 creating build/bdist.linux-armv7l/wheel/pybel/struct/mutation/induction 2020-09-20T17:56:02,477 copying build/lib/pybel/struct/mutation/induction/annotations.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation/induction 2020-09-20T17:56:02,483 copying build/lib/pybel/struct/mutation/induction/citation.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation/induction 2020-09-20T17:56:02,488 copying build/lib/pybel/struct/mutation/induction/paths.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation/induction 2020-09-20T17:56:02,494 copying build/lib/pybel/struct/mutation/induction/utils.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation/induction 2020-09-20T17:56:02,499 copying build/lib/pybel/struct/mutation/induction/neighborhood.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation/induction 2020-09-20T17:56:02,504 copying build/lib/pybel/struct/mutation/induction/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation/induction 2020-09-20T17:56:02,510 copying build/lib/pybel/struct/mutation/induction/upstream.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation/induction 2020-09-20T17:56:02,515 copying build/lib/pybel/struct/mutation/induction_expansion.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation 2020-09-20T17:56:02,520 copying build/lib/pybel/struct/mutation/transfer.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation 2020-09-20T17:56:02,528 creating build/bdist.linux-armv7l/wheel/pybel/struct/mutation/expansion 2020-09-20T17:56:02,531 copying build/lib/pybel/struct/mutation/expansion/neighborhood.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation/expansion 2020-09-20T17:56:02,537 copying build/lib/pybel/struct/mutation/expansion/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation/expansion 2020-09-20T17:56:02,541 copying build/lib/pybel/struct/mutation/expansion/upstream.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation/expansion 2020-09-20T17:56:02,546 copying build/lib/pybel/struct/mutation/utils.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation 2020-09-20T17:56:02,550 copying build/lib/pybel/struct/mutation/metadata.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation 2020-09-20T17:56:02,557 creating build/bdist.linux-armv7l/wheel/pybel/struct/mutation/deletion 2020-09-20T17:56:02,559 copying build/lib/pybel/struct/mutation/deletion/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation/deletion 2020-09-20T17:56:02,566 copying build/lib/pybel/struct/mutation/deletion/deletion.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation/deletion 2020-09-20T17:56:02,572 copying build/lib/pybel/struct/mutation/deletion/protein_rna_origins.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation/deletion 2020-09-20T17:56:02,578 copying build/lib/pybel/struct/mutation/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation 2020-09-20T17:56:02,583 copying build/lib/pybel/struct/mutation/bound.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation 2020-09-20T17:56:02,588 creating build/bdist.linux-armv7l/wheel/pybel/struct/mutation/inference 2020-09-20T17:56:02,590 copying build/lib/pybel/struct/mutation/inference/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation/inference 2020-09-20T17:56:02,595 copying build/lib/pybel/struct/mutation/inference/protein_rna_origins.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation/inference 2020-09-20T17:56:02,600 creating build/bdist.linux-armv7l/wheel/pybel/struct/mutation/collapse 2020-09-20T17:56:02,603 copying build/lib/pybel/struct/mutation/collapse/collapse.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation/collapse 2020-09-20T17:56:02,610 copying build/lib/pybel/struct/mutation/collapse/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation/collapse 2020-09-20T17:56:02,616 copying build/lib/pybel/struct/mutation/collapse/protein_rna_origins.py -> build/bdist.linux-armv7l/wheel/pybel/struct/mutation/collapse 2020-09-20T17:56:02,622 copying build/lib/pybel/struct/operations.py -> build/bdist.linux-armv7l/wheel/pybel/struct 2020-09-20T17:56:02,629 creating build/bdist.linux-armv7l/wheel/pybel/struct/summary 2020-09-20T17:56:02,631 copying build/lib/pybel/struct/summary/edge_summary.py -> build/bdist.linux-armv7l/wheel/pybel/struct/summary 2020-09-20T17:56:02,636 copying build/lib/pybel/struct/summary/provenance.py -> build/bdist.linux-armv7l/wheel/pybel/struct/summary 2020-09-20T17:56:02,641 copying build/lib/pybel/struct/summary/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/struct/summary 2020-09-20T17:56:02,648 copying build/lib/pybel/struct/summary/errors.py -> build/bdist.linux-armv7l/wheel/pybel/struct/summary 2020-09-20T17:56:02,654 copying build/lib/pybel/struct/summary/node_summary.py -> build/bdist.linux-armv7l/wheel/pybel/struct/summary 2020-09-20T17:56:02,662 creating build/bdist.linux-armv7l/wheel/pybel/struct/pipeline 2020-09-20T17:56:02,664 copying build/lib/pybel/struct/pipeline/exc.py -> build/bdist.linux-armv7l/wheel/pybel/struct/pipeline 2020-09-20T17:56:02,669 copying build/lib/pybel/struct/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/struct/pipeline 2020-09-20T17:56:02,673 copying build/lib/pybel/struct/pipeline/decorators.py -> build/bdist.linux-armv7l/wheel/pybel/struct/pipeline 2020-09-20T17:56:02,678 copying build/lib/pybel/struct/pipeline/pipeline.py -> build/bdist.linux-armv7l/wheel/pybel/struct/pipeline 2020-09-20T17:56:02,685 copying build/lib/pybel/struct/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/struct 2020-09-20T17:56:02,693 creating build/bdist.linux-armv7l/wheel/pybel/struct/filters 2020-09-20T17:56:02,695 copying build/lib/pybel/struct/filters/edge_predicates.py -> build/bdist.linux-armv7l/wheel/pybel/struct/filters 2020-09-20T17:56:02,703 copying build/lib/pybel/struct/filters/utils.py -> build/bdist.linux-armv7l/wheel/pybel/struct/filters 2020-09-20T17:56:02,707 copying build/lib/pybel/struct/filters/node_selection.py -> build/bdist.linux-armv7l/wheel/pybel/struct/filters 2020-09-20T17:56:02,712 copying build/lib/pybel/struct/filters/node_filters.py -> build/bdist.linux-armv7l/wheel/pybel/struct/filters 2020-09-20T17:56:02,717 copying build/lib/pybel/struct/filters/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/struct/filters 2020-09-20T17:56:02,721 copying build/lib/pybel/struct/filters/node_predicate_builders.py -> build/bdist.linux-armv7l/wheel/pybel/struct/filters 2020-09-20T17:56:02,727 copying build/lib/pybel/struct/filters/node_predicates.py -> build/bdist.linux-armv7l/wheel/pybel/struct/filters 2020-09-20T17:56:02,735 copying build/lib/pybel/struct/filters/edge_predicate_builders.py -> build/bdist.linux-armv7l/wheel/pybel/struct/filters 2020-09-20T17:56:02,744 copying build/lib/pybel/struct/filters/edge_filters.py -> build/bdist.linux-armv7l/wheel/pybel/struct/filters 2020-09-20T17:56:02,750 copying build/lib/pybel/struct/graph.py -> build/bdist.linux-armv7l/wheel/pybel/struct 2020-09-20T17:56:02,759 copying build/lib/pybel/utils.py -> build/bdist.linux-armv7l/wheel/pybel 2020-09-20T17:56:02,789 copying build/lib/pybel/exceptions.py -> build/bdist.linux-armv7l/wheel/pybel 2020-09-20T17:56:02,798 creating build/bdist.linux-armv7l/wheel/pybel/dsl 2020-09-20T17:56:02,802 copying build/lib/pybel/dsl/nodes.py -> build/bdist.linux-armv7l/wheel/pybel/dsl 2020-09-20T17:56:02,812 copying build/lib/pybel/dsl/namespaces.py -> build/bdist.linux-armv7l/wheel/pybel/dsl 2020-09-20T17:56:02,818 copying build/lib/pybel/dsl/utils.py -> build/bdist.linux-armv7l/wheel/pybel/dsl 2020-09-20T17:56:02,824 copying build/lib/pybel/dsl/exc.py -> build/bdist.linux-armv7l/wheel/pybel/dsl 2020-09-20T17:56:02,830 copying build/lib/pybel/dsl/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/dsl 2020-09-20T17:56:02,836 copying build/lib/pybel/dsl/edges.py -> build/bdist.linux-armv7l/wheel/pybel/dsl 2020-09-20T17:56:02,841 copying build/lib/pybel/constants.py -> build/bdist.linux-armv7l/wheel/pybel 2020-09-20T17:56:02,849 creating build/bdist.linux-armv7l/wheel/pybel/examples 2020-09-20T17:56:02,851 copying build/lib/pybel/examples/sialic_acid_example.py -> build/bdist.linux-armv7l/wheel/pybel/examples 2020-09-20T17:56:02,859 copying build/lib/pybel/examples/egf_example.py -> build/bdist.linux-armv7l/wheel/pybel/examples 2020-09-20T17:56:02,869 copying build/lib/pybel/examples/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/examples 2020-09-20T17:56:02,875 copying build/lib/pybel/examples/homology_example.py -> build/bdist.linux-armv7l/wheel/pybel/examples 2020-09-20T17:56:02,881 copying build/lib/pybel/examples/statin_example.py -> build/bdist.linux-armv7l/wheel/pybel/examples 2020-09-20T17:56:02,887 copying build/lib/pybel/examples/braf_example.py -> build/bdist.linux-armv7l/wheel/pybel/examples 2020-09-20T17:56:02,893 copying build/lib/pybel/tokens.py -> build/bdist.linux-armv7l/wheel/pybel 2020-09-20T17:56:02,899 copying build/lib/pybel/canonicalize.py -> build/bdist.linux-armv7l/wheel/pybel 2020-09-20T17:56:02,905 copying build/lib/pybel/cli.py -> build/bdist.linux-armv7l/wheel/pybel 2020-09-20T17:56:02,911 copying build/lib/pybel/__init__.py -> build/bdist.linux-armv7l/wheel/pybel 2020-09-20T17:56:02,917 creating build/bdist.linux-armv7l/wheel/pybel/manager 2020-09-20T17:56:02,920 copying build/lib/pybel/manager/models.py -> build/bdist.linux-armv7l/wheel/pybel/manager 2020-09-20T17:56:02,930 copying build/lib/pybel/manager/utils.py -> build/bdist.linux-armv7l/wheel/pybel/manager 2020-09-20T17:56:02,936 copying build/lib/pybel/manager/base_manager.py -> build/bdist.linux-armv7l/wheel/pybel/manager 2020-09-20T17:56:02,941 copying build/lib/pybel/manager/exc.py -> build/bdist.linux-armv7l/wheel/pybel/manager 2020-09-20T17:56:02,946 copying build/lib/pybel/manager/database_io.py -> build/bdist.linux-armv7l/wheel/pybel/manager 2020-09-20T17:56:02,950 copying build/lib/pybel/manager/make_json_serializable.py -> build/bdist.linux-armv7l/wheel/pybel/manager 2020-09-20T17:56:02,954 copying build/lib/pybel/manager/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/manager 2020-09-20T17:56:02,959 copying build/lib/pybel/manager/query_manager.py -> build/bdist.linux-armv7l/wheel/pybel/manager 2020-09-20T17:56:02,966 copying build/lib/pybel/manager/lookup_manager.py -> build/bdist.linux-armv7l/wheel/pybel/manager 2020-09-20T17:56:02,972 copying build/lib/pybel/manager/defaults.py -> build/bdist.linux-armv7l/wheel/pybel/manager 2020-09-20T17:56:02,979 copying build/lib/pybel/manager/cache_manager.py -> build/bdist.linux-armv7l/wheel/pybel/manager 2020-09-20T17:56:02,989 copying build/lib/pybel/manager/citation_utils.py -> build/bdist.linux-armv7l/wheel/pybel/manager 2020-09-20T17:56:02,995 creating build/bdist.linux-armv7l/wheel/pybel/resources 2020-09-20T17:56:02,997 copying build/lib/pybel/resources/utils.py -> build/bdist.linux-armv7l/wheel/pybel/resources 2020-09-20T17:56:03,004 copying build/lib/pybel/resources/exc.py -> build/bdist.linux-armv7l/wheel/pybel/resources 2020-09-20T17:56:03,009 copying build/lib/pybel/resources/constants.py -> build/bdist.linux-armv7l/wheel/pybel/resources 2020-09-20T17:56:03,015 copying build/lib/pybel/resources/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/resources 2020-09-20T17:56:03,021 creating build/bdist.linux-armv7l/wheel/pybel/resources/definitions 2020-09-20T17:56:03,023 copying build/lib/pybel/resources/definitions/write_utils.py -> build/bdist.linux-armv7l/wheel/pybel/resources/definitions 2020-09-20T17:56:03,028 copying build/lib/pybel/resources/definitions/definitions.py -> build/bdist.linux-armv7l/wheel/pybel/resources/definitions 2020-09-20T17:56:03,032 copying build/lib/pybel/resources/definitions/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/resources/definitions 2020-09-20T17:56:03,036 copying build/lib/pybel/resources/definitions/namespace.py -> build/bdist.linux-armv7l/wheel/pybel/resources/definitions 2020-09-20T17:56:03,043 copying build/lib/pybel/resources/definitions/annotation.py -> build/bdist.linux-armv7l/wheel/pybel/resources/definitions 2020-09-20T17:56:03,049 copying build/lib/pybel/resources/document.py -> build/bdist.linux-armv7l/wheel/pybel/resources 2020-09-20T17:56:03,058 creating build/bdist.linux-armv7l/wheel/pybel/testing 2020-09-20T17:56:03,060 copying build/lib/pybel/testing/utils.py -> build/bdist.linux-armv7l/wheel/pybel/testing 2020-09-20T17:56:03,065 copying build/lib/pybel/testing/cases.py -> build/bdist.linux-armv7l/wheel/pybel/testing 2020-09-20T17:56:03,069 copying build/lib/pybel/testing/constants.py -> build/bdist.linux-armv7l/wheel/pybel/testing 2020-09-20T17:56:03,073 copying build/lib/pybel/testing/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/testing 2020-09-20T17:56:03,077 copying build/lib/pybel/testing/mocks.py -> build/bdist.linux-armv7l/wheel/pybel/testing 2020-09-20T17:56:03,085 creating build/bdist.linux-armv7l/wheel/pybel/testing/resources 2020-09-20T17:56:03,089 creating build/bdist.linux-armv7l/wheel/pybel/testing/resources/bel 2020-09-20T17:56:03,093 copying build/lib/pybel/testing/resources/bel/isolated.bel -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/bel 2020-09-20T17:56:03,099 copying build/lib/pybel/testing/resources/bel/slushy.bel -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/bel 2020-09-20T17:56:03,104 copying build/lib/pybel/testing/resources/bel/Cytotoxic T-cell Signaling-2.0-Hs.json -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/bel 2020-09-20T17:56:03,149 copying build/lib/pybel/testing/resources/bel/thorough.bel -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/bel 2020-09-20T17:56:03,156 copying build/lib/pybel/testing/resources/bel/misordered.bel -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/bel 2020-09-20T17:56:03,162 copying build/lib/pybel/testing/resources/bel/test_bel.bel -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/bel 2020-09-20T17:56:03,170 creating build/bdist.linux-armv7l/wheel/pybel/testing/resources/belns 2020-09-20T17:56:03,172 copying build/lib/pybel/testing/resources/belns/hgnc-human-genes.belns -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/belns 2020-09-20T17:56:03,178 copying build/lib/pybel/testing/resources/belns/go-biological-process.belns -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/belns 2020-09-20T17:56:03,183 copying build/lib/pybel/testing/resources/belns/test_ns_1.belns -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/belns 2020-09-20T17:56:03,187 copying build/lib/pybel/testing/resources/belns/chebi.belns -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/belns 2020-09-20T17:56:03,192 copying build/lib/pybel/testing/resources/belns/test_ns_1_updated.belns -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/belns 2020-09-20T17:56:03,196 copying build/lib/pybel/testing/resources/belns/test_nocache.belns -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/belns 2020-09-20T17:56:03,201 copying build/lib/pybel/testing/resources/belns/test_ns_empty.belns -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/belns 2020-09-20T17:56:03,206 copying build/lib/pybel/testing/resources/belns/mesh-diseases.belns -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/belns 2020-09-20T17:56:03,212 copying build/lib/pybel/testing/resources/belns/go-cellular-component.belns -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/belns 2020-09-20T17:56:03,218 copying build/lib/pybel/testing/resources/belns/disease-ontology.belns -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/belns 2020-09-20T17:56:03,224 copying build/lib/pybel/testing/resources/belns/test_ns_2.belns -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/belns 2020-09-20T17:56:03,231 creating build/bdist.linux-armv7l/wheel/pybel/testing/resources/belanno 2020-09-20T17:56:03,234 copying build/lib/pybel/testing/resources/belanno/cell-line.belanno -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/belanno 2020-09-20T17:56:03,240 copying build/lib/pybel/testing/resources/belanno/mesh-diseases.belanno -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/belanno 2020-09-20T17:56:03,246 copying build/lib/pybel/testing/resources/belanno/test_an_1.belanno -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/belanno 2020-09-20T17:56:03,251 copying build/lib/pybel/testing/resources/belanno/species-taxonomy-id.belanno -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/belanno 2020-09-20T17:56:03,257 copying build/lib/pybel/testing/resources/belanno/confidence-1.0.0.belanno -> build/bdist.linux-armv7l/wheel/pybel/testing/resources/belanno 2020-09-20T17:56:03,264 creating build/bdist.linux-armv7l/wheel/pybel/parser 2020-09-20T17:56:03,266 copying build/lib/pybel/parser/baseparser.py -> build/bdist.linux-armv7l/wheel/pybel/parser 2020-09-20T17:56:03,270 copying build/lib/pybel/parser/parse_control.py -> build/bdist.linux-armv7l/wheel/pybel/parser 2020-09-20T17:56:03,276 copying build/lib/pybel/parser/parse_bel.py -> build/bdist.linux-armv7l/wheel/pybel/parser 2020-09-20T17:56:03,285 copying build/lib/pybel/parser/utils.py -> build/bdist.linux-armv7l/wheel/pybel/parser 2020-09-20T17:56:03,291 copying build/lib/pybel/parser/exc.py -> build/bdist.linux-armv7l/wheel/pybel/parser 2020-09-20T17:56:03,300 creating build/bdist.linux-armv7l/wheel/pybel/parser/modifiers 2020-09-20T17:56:03,303 copying build/lib/pybel/parser/modifiers/protein_modification.py -> build/bdist.linux-armv7l/wheel/pybel/parser/modifiers 2020-09-20T17:56:03,308 copying build/lib/pybel/parser/modifiers/location.py -> build/bdist.linux-armv7l/wheel/pybel/parser/modifiers 2020-09-20T17:56:03,313 copying build/lib/pybel/parser/modifiers/fusion.py -> build/bdist.linux-armv7l/wheel/pybel/parser/modifiers 2020-09-20T17:56:03,317 copying build/lib/pybel/parser/modifiers/protein_substitution.py -> build/bdist.linux-armv7l/wheel/pybel/parser/modifiers 2020-09-20T17:56:03,321 copying build/lib/pybel/parser/modifiers/truncation.py -> build/bdist.linux-armv7l/wheel/pybel/parser/modifiers 2020-09-20T17:56:03,327 copying build/lib/pybel/parser/modifiers/constants.py -> build/bdist.linux-armv7l/wheel/pybel/parser/modifiers 2020-09-20T17:56:03,332 copying build/lib/pybel/parser/modifiers/gene_modification.py -> build/bdist.linux-armv7l/wheel/pybel/parser/modifiers 2020-09-20T17:56:03,338 copying build/lib/pybel/parser/modifiers/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/parser/modifiers 2020-09-20T17:56:03,344 copying build/lib/pybel/parser/modifiers/gene_substitution.py -> build/bdist.linux-armv7l/wheel/pybel/parser/modifiers 2020-09-20T17:56:03,350 copying build/lib/pybel/parser/modifiers/variant.py -> build/bdist.linux-armv7l/wheel/pybel/parser/modifiers 2020-09-20T17:56:03,356 copying build/lib/pybel/parser/modifiers/fragment.py -> build/bdist.linux-armv7l/wheel/pybel/parser/modifiers 2020-09-20T17:56:03,361 copying build/lib/pybel/parser/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/parser 2020-09-20T17:56:03,367 copying build/lib/pybel/parser/parse_metadata.py -> build/bdist.linux-armv7l/wheel/pybel/parser 2020-09-20T17:56:03,375 copying build/lib/pybel/parser/parse_identifier.py -> build/bdist.linux-armv7l/wheel/pybel/parser 2020-09-20T17:56:03,384 creating build/bdist.linux-armv7l/wheel/pybel/io 2020-09-20T17:56:03,387 copying build/lib/pybel/io/jgif.py -> build/bdist.linux-armv7l/wheel/pybel/io 2020-09-20T17:56:03,397 copying build/lib/pybel/io/utils.py -> build/bdist.linux-armv7l/wheel/pybel/io 2020-09-20T17:56:03,403 copying build/lib/pybel/io/exc.py -> build/bdist.linux-armv7l/wheel/pybel/io 2020-09-20T17:56:03,409 copying build/lib/pybel/io/extras.py -> build/bdist.linux-armv7l/wheel/pybel/io 2020-09-20T17:56:03,415 copying build/lib/pybel/io/neo4j.py -> build/bdist.linux-armv7l/wheel/pybel/io 2020-09-20T17:56:03,420 copying build/lib/pybel/io/nodelink.py -> build/bdist.linux-armv7l/wheel/pybel/io 2020-09-20T17:56:03,426 copying build/lib/pybel/io/__init__.py -> build/bdist.linux-armv7l/wheel/pybel/io 2020-09-20T17:56:03,433 copying build/lib/pybel/io/indra.py -> build/bdist.linux-armv7l/wheel/pybel/io 2020-09-20T17:56:03,439 copying build/lib/pybel/io/line_utils.py -> build/bdist.linux-armv7l/wheel/pybel/io 2020-09-20T17:56:03,446 copying build/lib/pybel/io/lines.py -> build/bdist.linux-armv7l/wheel/pybel/io 2020-09-20T17:56:03,451 copying build/lib/pybel/io/web.py -> build/bdist.linux-armv7l/wheel/pybel/io 2020-09-20T17:56:03,455 copying build/lib/pybel/io/gpickle.py -> build/bdist.linux-armv7l/wheel/pybel/io 2020-09-20T17:56:03,460 copying build/lib/pybel/language.py -> build/bdist.linux-armv7l/wheel/pybel 2020-09-20T17:56:03,465 running install_egg_info 2020-09-20T17:56:03,497 Copying src/PyBEL.egg-info to build/bdist.linux-armv7l/wheel/PyBEL-0.11.10-py3.5.egg-info 2020-09-20T17:56:03,534 running install_scripts 2020-09-20T17:56:03,772 creating build/bdist.linux-armv7l/wheel/PyBEL-0.11.10.dist-info/WHEEL 2020-09-20T17:56:04,869 Building wheel for pybel (setup.py): finished with status 'done' 2020-09-20T17:56:04,879 Created wheel for pybel: filename=PyBEL-0.11.10-py2.py3-none-any.whl size=279903 sha256=5eee524e529c533cf86a9896d5a619e183cff48ad27e01a98134ae9bfc5ad4e9 2020-09-20T17:56:04,880 Stored in directory: /tmp/pip-ephem-wheel-cache-k4kh1glj/wheels/6f/c6/df/f091cd2efbf92d8f6dd363e703373d26181a3ad42c8e03abb2 2020-09-20T17:56:04,884 Successfully built pybel 2020-09-20T17:56:04,940 Removed build tracker: '/tmp/pip-req-tracker-ux8jyqw3'