2020-09-20T17:57:55,314 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-09-20T17:57:55,916 Created temporary directory: /tmp/pip-ephem-wheel-cache-b1knv2x4
2020-09-20T17:57:55,920 Created temporary directory: /tmp/pip-req-tracker-enmpabf9
2020-09-20T17:57:55,921 Initialized build tracking at /tmp/pip-req-tracker-enmpabf9
2020-09-20T17:57:55,921 Created build tracker: /tmp/pip-req-tracker-enmpabf9
2020-09-20T17:57:55,921 Entered build tracker: /tmp/pip-req-tracker-enmpabf9
2020-09-20T17:57:55,923 Created temporary directory: /tmp/pip-wheel-xmdvs5wq
2020-09-20T17:57:55,939 1 location(s) to search for versions of photon-ptm:
2020-09-20T17:57:55,939 * https://pypi.org/simple/photon-ptm/
2020-09-20T17:57:55,940 Fetching project page and analyzing links: https://pypi.org/simple/photon-ptm/
2020-09-20T17:57:55,942 Getting page https://pypi.org/simple/photon-ptm/
2020-09-20T17:57:55,945 Found index url https://pypi.org/simple
2020-09-20T17:57:56,156   Found link https://files.pythonhosted.org/packages/44/cf/99b2ba3a1532a224b1d2ca58df76cfe5744a4c3d3a10cf34c0bacdae80b0/photon_ptm-0.2.0.tar.gz#sha256=37323b9a6c782de66a11a7e980244e8f5b8f6f499a82970bebcb98e214027022 (from https://pypi.org/simple/photon-ptm/), version: 0.2.0
2020-09-20T17:57:56,157   Found link https://files.pythonhosted.org/packages/b2/cc/033880918ac5e59ca5bb2fea598ba1e85550990df30f370d59eed845804e/photon_ptm-0.2.1.tar.gz#sha256=80fe4807a9032cafcea4ca23944cbd17eb4ff15cf1804bb60b9e46d569cf2259 (from https://pypi.org/simple/photon-ptm/), version: 0.2.1
2020-09-20T17:57:56,158   Found link https://files.pythonhosted.org/packages/e5/9a/ed5a90fc79a4f1e6605715b1fbc14e245f7e616156e767e4fb23f24bcaf1/photon_ptm-0.2.2.tar.gz#sha256=1499710d5b85aacf0e9618a78de253c6836e3baa1714d5c90618b5111da9894f (from https://pypi.org/simple/photon-ptm/), version: 0.2.2
2020-09-20T17:57:56,158   Found link https://files.pythonhosted.org/packages/17/0c/5057a42906201cc00b94490c1b4a305b5745147b67e2ea1f2894e1509c8a/photon_ptm-0.2.3.tar.gz#sha256=6b6a374f66dc2d3d742134bab4b98334066eb14984a90bab9bbf3e066c805c97 (from https://pypi.org/simple/photon-ptm/), version: 0.2.3
2020-09-20T17:57:56,159   Found link https://files.pythonhosted.org/packages/c9/f9/f70f048cb9f62cb34d48ed8d1adaabe39424320b693bcce5a8db105829df/photon_ptm-0.2.4.tar.gz#sha256=72fcf8df33ccf1e27455387422d70883fd9cf1324fda3f1a46dc03b1de51c032 (from https://pypi.org/simple/photon-ptm/), version: 0.2.4
2020-09-20T17:57:56,160   Found link https://files.pythonhosted.org/packages/e0/e3/46802b8d193bc76c0a68a536dfe6f425aa64f67b10db79afbb6fab2fc5de/photon_ptm-0.2.5.tar.gz#sha256=7fd86dc30aa20be8d27ef3f9ce66fc8281c0c2b83d206fa892049df298ab92c3 (from https://pypi.org/simple/photon-ptm/), version: 0.2.5
2020-09-20T17:57:56,161   Found link https://files.pythonhosted.org/packages/a6/5c/c35cc366b3437cbf2578889f3fff385d926e7196606a18535835f91ada4a/photon_ptm-0.2.6.tar.gz#sha256=73faafd3e570605545c99a75b1d49a44d915e1442cce20e4a64d38a1e4272b0c (from https://pypi.org/simple/photon-ptm/), version: 0.2.6
2020-09-20T17:57:56,162   Found link https://files.pythonhosted.org/packages/8f/bf/d4bf8497043a39986f7d6b0a7cf58eb0b2402461a1dd70c093a1567bd156/photon_ptm-0.2.7.tar.gz#sha256=09d0790935994fb0da58735ef8cc6b3e71bf67ca019fd0fbf15f21bd9c547eca (from https://pypi.org/simple/photon-ptm/), version: 0.2.7
2020-09-20T17:57:56,162   Found link https://files.pythonhosted.org/packages/49/0b/68bed752a43fd97769e76617c976556b5678dba1a5483d543f3fba148ea1/photon_ptm-0.2.8.tar.gz#sha256=d0cf56ec8204921271db32b1191ca8aa83b231a36d31e6b93705a012a70c27f9 (from https://pypi.org/simple/photon-ptm/), version: 0.2.8
2020-09-20T17:57:56,163   Found link https://files.pythonhosted.org/packages/d3/d1/4ca6e77f2a70985409e46a11321fa3474240d520c64f2dc1fcf09dbab43c/photon_ptm-0.3.0.tar.gz#sha256=df96edc71350622ee5316da2da28e1832a4a8ed2cf03df4860ceaa9f4539fba3 (from https://pypi.org/simple/photon-ptm/), version: 0.3.0
2020-09-20T17:57:56,164   Found link https://files.pythonhosted.org/packages/10/d9/90af00c6f6982471ede984cdead4e7083a2e803dbc4ccecd7cd8703a5175/photon_ptm-0.3.1.tar.gz#sha256=ffbe2381bb1f84a52e6fa82a0cc0afce181ab93c28e4fc587080f4b1a60b0f13 (from https://pypi.org/simple/photon-ptm/), version: 0.3.1
2020-09-20T17:57:56,176 Given no hashes to check 1 links for project 'photon-ptm': discarding no candidates
2020-09-20T17:57:56,177 Using version 0.3.0 (newest of versions: 0.3.0)
2020-09-20T17:57:56,185 Collecting photon-ptm==0.3.0
2020-09-20T17:57:56,189   Created temporary directory: /tmp/pip-unpack-ikzcry33
2020-09-20T17:57:56,269   Downloading photon_ptm-0.3.0.tar.gz (18 kB)
2020-09-20T17:57:56,405   Added photon-ptm==0.3.0 from https://files.pythonhosted.org/packages/d3/d1/4ca6e77f2a70985409e46a11321fa3474240d520c64f2dc1fcf09dbab43c/photon_ptm-0.3.0.tar.gz#sha256=df96edc71350622ee5316da2da28e1832a4a8ed2cf03df4860ceaa9f4539fba3 to build tracker '/tmp/pip-req-tracker-enmpabf9'
2020-09-20T17:57:56,407     Running setup.py (path:/tmp/pip-wheel-xmdvs5wq/photon-ptm/setup.py) egg_info for package photon-ptm
2020-09-20T17:57:56,408     Created temporary directory: /tmp/pip-pip-egg-info-mkc131ah
2020-09-20T17:57:56,409     Running command python setup.py egg_info
2020-09-20T17:57:58,401     running egg_info
2020-09-20T17:57:58,407     creating /tmp/pip-pip-egg-info-mkc131ah/photon_ptm.egg-info
2020-09-20T17:57:58,410     writing requirements to /tmp/pip-pip-egg-info-mkc131ah/photon_ptm.egg-info/requires.txt
2020-09-20T17:57:58,412     writing top-level names to /tmp/pip-pip-egg-info-mkc131ah/photon_ptm.egg-info/top_level.txt
2020-09-20T17:57:58,414     writing dependency_links to /tmp/pip-pip-egg-info-mkc131ah/photon_ptm.egg-info/dependency_links.txt
2020-09-20T17:57:58,416     writing /tmp/pip-pip-egg-info-mkc131ah/photon_ptm.egg-info/PKG-INFO
2020-09-20T17:57:58,448     writing manifest file '/tmp/pip-pip-egg-info-mkc131ah/photon_ptm.egg-info/SOURCES.txt'
2020-09-20T17:57:58,767     reading manifest file '/tmp/pip-pip-egg-info-mkc131ah/photon_ptm.egg-info/SOURCES.txt'
2020-09-20T17:57:58,770     reading manifest template 'MANIFEST.in'
2020-09-20T17:57:58,776     writing manifest file '/tmp/pip-pip-egg-info-mkc131ah/photon_ptm.egg-info/SOURCES.txt'
2020-09-20T17:57:58,905   Source in /tmp/pip-wheel-xmdvs5wq/photon-ptm has version 0.3.0, which satisfies requirement photon-ptm==0.3.0 from https://files.pythonhosted.org/packages/d3/d1/4ca6e77f2a70985409e46a11321fa3474240d520c64f2dc1fcf09dbab43c/photon_ptm-0.3.0.tar.gz#sha256=df96edc71350622ee5316da2da28e1832a4a8ed2cf03df4860ceaa9f4539fba3
2020-09-20T17:57:58,907   Removed photon-ptm==0.3.0 from https://files.pythonhosted.org/packages/d3/d1/4ca6e77f2a70985409e46a11321fa3474240d520c64f2dc1fcf09dbab43c/photon_ptm-0.3.0.tar.gz#sha256=df96edc71350622ee5316da2da28e1832a4a8ed2cf03df4860ceaa9f4539fba3 from build tracker '/tmp/pip-req-tracker-enmpabf9'
2020-09-20T17:57:58,910 Building wheels for collected packages: photon-ptm
2020-09-20T17:57:58,917   Created temporary directory: /tmp/pip-wheel-bgij1eb9
2020-09-20T17:57:58,918   Building wheel for photon-ptm (setup.py): started
2020-09-20T17:57:58,918   Destination directory: /tmp/pip-wheel-bgij1eb9
2020-09-20T17:57:58,919   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-xmdvs5wq/photon-ptm/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-xmdvs5wq/photon-ptm/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-bgij1eb9
2020-09-20T17:58:00,948   running bdist_wheel
2020-09-20T17:58:00,961   running build
2020-09-20T17:58:00,962   running build_py
2020-09-20T17:58:01,255   creating build
2020-09-20T17:58:01,256   creating build/lib
2020-09-20T17:58:01,257   creating build/lib/phos
2020-09-20T17:58:01,259   copying phos/pipeline.py -> build/lib/phos
2020-09-20T17:58:01,263   copying phos/app.py -> build/lib/phos
2020-09-20T17:58:01,266   copying phos/__init__.py -> build/lib/phos
2020-09-20T17:58:01,269   copying phos/defaults.py -> build/lib/phos
2020-09-20T17:58:01,272   copying phos/version.py -> build/lib/phos
2020-09-20T17:58:01,277   creating build/lib/phos/algo
2020-09-20T17:58:01,279   copying phos/algo/activity.py -> build/lib/phos/algo
2020-09-20T17:58:01,284   copying phos/algo/functional_sites.py -> build/lib/phos/algo
2020-09-20T17:58:01,287   copying phos/algo/__init__.py -> build/lib/phos/algo
2020-09-20T17:58:01,290   copying phos/algo/subnetwork.py -> build/lib/phos/algo
2020-09-20T17:58:01,294   copying phos/algo/anat.py -> build/lib/phos/algo
2020-09-20T17:58:01,299   copying phos/algo/logistic_regression.py -> build/lib/phos/algo
2020-09-20T17:58:01,304   creating build/lib/phos/data
2020-09-20T17:58:01,305   copying phos/data/silac.py -> build/lib/phos/data
2020-09-20T17:58:01,311   copying phos/data/network.py -> build/lib/phos/data
2020-09-20T17:58:01,315   copying phos/data/functional_sites.py -> build/lib/phos/data
2020-09-20T17:58:01,318   copying phos/data/__init__.py -> build/lib/phos/data
2020-09-20T17:58:01,349   copying phos/data/read.py -> build/lib/phos/data
2020-09-20T17:58:01,358   creating build/lib/phos/util
2020-09-20T17:58:01,360   copying phos/util/network.py -> build/lib/phos/util
2020-09-20T17:58:01,367   copying phos/util/fdr.py -> build/lib/phos/util
2020-09-20T17:58:01,372   copying phos/util/__init__.py -> build/lib/phos/util
2020-09-20T17:58:01,377   copying phos/util/io.py -> build/lib/phos/util
2020-09-20T17:58:01,381   copying phos/util/mapping.py -> build/lib/phos/util
2020-09-20T17:58:01,396   installing to build/bdist.linux-armv7l/wheel
2020-09-20T17:58:01,397   running install
2020-09-20T17:58:01,399   running install_lib
2020-09-20T17:58:01,405   creating build/bdist.linux-armv7l
2020-09-20T17:58:01,407   creating build/bdist.linux-armv7l/wheel
2020-09-20T17:58:01,410   creating build/bdist.linux-armv7l/wheel/phos
2020-09-20T17:58:01,412   copying build/lib/phos/pipeline.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T17:58:01,418   creating build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T17:58:01,420   copying build/lib/phos/algo/activity.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T17:58:01,427   copying build/lib/phos/algo/functional_sites.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T17:58:01,432   copying build/lib/phos/algo/__init__.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T17:58:01,436   copying build/lib/phos/algo/subnetwork.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T17:58:01,441   copying build/lib/phos/algo/anat.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T17:58:01,447   copying build/lib/phos/algo/logistic_regression.py -> build/bdist.linux-armv7l/wheel/phos/algo
2020-09-20T17:58:01,451   copying build/lib/phos/app.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T17:58:01,455   copying build/lib/phos/__init__.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T17:58:01,459   copying build/lib/phos/defaults.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T17:58:01,464   creating build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T17:58:01,466   copying build/lib/phos/data/silac.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T17:58:01,470   copying build/lib/phos/data/network.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T17:58:01,474   copying build/lib/phos/data/functional_sites.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T17:58:01,478   copying build/lib/phos/data/__init__.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T17:58:01,481   copying build/lib/phos/data/read.py -> build/bdist.linux-armv7l/wheel/phos/data
2020-09-20T17:58:01,486   creating build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T17:58:01,488   copying build/lib/phos/util/network.py -> build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T17:58:01,492   copying build/lib/phos/util/fdr.py -> build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T17:58:01,496   copying build/lib/phos/util/__init__.py -> build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T17:58:01,500   copying build/lib/phos/util/io.py -> build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T17:58:01,504   copying build/lib/phos/util/mapping.py -> build/bdist.linux-armv7l/wheel/phos/util
2020-09-20T17:58:01,508   copying build/lib/phos/version.py -> build/bdist.linux-armv7l/wheel/phos
2020-09-20T17:58:01,511   running install_egg_info
2020-09-20T17:58:01,559   running egg_info
2020-09-20T17:58:01,560   writing dependency_links to photon_ptm.egg-info/dependency_links.txt
2020-09-20T17:58:01,563   writing photon_ptm.egg-info/PKG-INFO
2020-09-20T17:58:01,568   writing requirements to photon_ptm.egg-info/requires.txt
2020-09-20T17:58:01,571   writing top-level names to photon_ptm.egg-info/top_level.txt
2020-09-20T17:58:01,584   reading manifest file 'photon_ptm.egg-info/SOURCES.txt'
2020-09-20T17:58:01,588   reading manifest template 'MANIFEST.in'
2020-09-20T17:58:01,597   writing manifest file 'photon_ptm.egg-info/SOURCES.txt'
2020-09-20T17:58:01,599   Copying photon_ptm.egg-info to build/bdist.linux-armv7l/wheel/photon_ptm-0.3.0-py3.5.egg-info
2020-09-20T17:58:01,621   running install_scripts
2020-09-20T17:58:01,811   creating build/bdist.linux-armv7l/wheel/photon_ptm-0.3.0.dist-info/WHEEL
2020-09-20T17:58:02,056   Building wheel for photon-ptm (setup.py): finished with status 'done'
2020-09-20T17:58:02,060   Created wheel for photon-ptm: filename=photon_ptm-0.3.0-py3-none-any.whl size=26757 sha256=dce7e910204ec5bcfb83b34877345acdb44e6b1c1ace1d40c6234254ee4efeed
2020-09-20T17:58:02,061   Stored in directory: /tmp/pip-ephem-wheel-cache-b1knv2x4/wheels/9e/3d/e9/f6c053769eeaf32b5a622be97fc47505c9f63cea0a3c5b15b5
2020-09-20T17:58:02,064 Successfully built photon-ptm
2020-09-20T17:58:02,071 Removed build tracker: '/tmp/pip-req-tracker-enmpabf9'