2020-09-20T20:08:34,351 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-09-20T20:08:35,012 Created temporary directory: /tmp/pip-ephem-wheel-cache-he8nx79r
2020-09-20T20:08:35,017 Created temporary directory: /tmp/pip-req-tracker-_kuzqt69
2020-09-20T20:08:35,018 Initialized build tracking at /tmp/pip-req-tracker-_kuzqt69
2020-09-20T20:08:35,018 Created build tracker: /tmp/pip-req-tracker-_kuzqt69
2020-09-20T20:08:35,018 Entered build tracker: /tmp/pip-req-tracker-_kuzqt69
2020-09-20T20:08:35,020 Created temporary directory: /tmp/pip-wheel-facfne7j
2020-09-20T20:08:35,037 1 location(s) to search for versions of propka:
2020-09-20T20:08:35,037 * https://pypi.org/simple/propka/
2020-09-20T20:08:35,038 Fetching project page and analyzing links: https://pypi.org/simple/propka/
2020-09-20T20:08:35,040 Getting page https://pypi.org/simple/propka/
2020-09-20T20:08:35,044 Found index url https://pypi.org/simple
2020-09-20T20:08:35,365   Found link https://files.pythonhosted.org/packages/a3/7b/e935ce37cbf9ac8fe23ec05f8072fb3a63582b20fb01ef0c24502b5d10ba/PROPKA-3.1.0.tar.gz#sha256=ada690067c5ad9ca6be412491380929e5275fa41166aa1fb2c820fcc2dfdb619 (from https://pypi.org/simple/propka/), version: 3.1.0
2020-09-20T20:08:35,375   Link requires a different Python (3.5.3 not in: '>=3.6'): https://files.pythonhosted.org/packages/0a/8b/740338b380ad7657519bdd533446ea343891ffaec2cce8f67b58801a9d99/propka-3.2.0-py2.py3-none-any.whl#sha256=c88e4746175ca7649635b529019aeac71bd121e49feadba1a78d0bb7f2c239b6 (from https://pypi.org/simple/propka/) (requires-python:>=3.6)
2020-09-20T20:08:35,377   Link requires a different Python (3.5.3 not in: '>=3.6'): https://files.pythonhosted.org/packages/b5/e9/cae6da56022fa4e77bdffbb7827ba5bd1ee3f12814fd83086371618fdeff/propka-3.2.0.tar.gz#sha256=01b1c68a371ff0449e8e679aca281f71b75eadc2d9d7fb5b227bb929b4d079ec (from https://pypi.org/simple/propka/) (requires-python:>=3.6)
2020-09-20T20:08:35,378   Link requires a different Python (3.5.3 not in: '>=3.6'): https://files.pythonhosted.org/packages/7e/c2/407667048b603f1a25a35817fb2648a1f2455712e8d31a295ee0ecc3e0f6/propka-3.3.0-py2.py3-none-any.whl#sha256=3cd74a7c97339095212612e8bbae70537c3a26a14601e43d810cf580093ed17f (from https://pypi.org/simple/propka/) (requires-python:>=3.6)
2020-09-20T20:08:35,380   Link requires a different Python (3.5.3 not in: '>=3.6'): https://files.pythonhosted.org/packages/6d/0b/c707ccdf5891ce1c25bdc200c1d6078b8af693d12119d22f48d02ac7a71f/propka-3.3.0.tar.gz#sha256=2fc79dbd921c2e0db01692dc6775a3a693be6ca7320bd811b03a14a3dda10779 (from https://pypi.org/simple/propka/) (requires-python:>=3.6)
2020-09-20T20:08:35,381 Given no hashes to check 1 links for project 'propka': discarding no candidates
2020-09-20T20:08:35,383 Using version 3.1.0 (newest of versions: 3.1.0)
2020-09-20T20:08:35,391 Collecting propka==3.1.0
2020-09-20T20:08:35,396   Created temporary directory: /tmp/pip-unpack-pvf4ra9e
2020-09-20T20:08:35,488   Downloading PROPKA-3.1.0.tar.gz (69 kB)
2020-09-20T20:08:35,770   Added propka==3.1.0 from https://files.pythonhosted.org/packages/a3/7b/e935ce37cbf9ac8fe23ec05f8072fb3a63582b20fb01ef0c24502b5d10ba/PROPKA-3.1.0.tar.gz#sha256=ada690067c5ad9ca6be412491380929e5275fa41166aa1fb2c820fcc2dfdb619 to build tracker '/tmp/pip-req-tracker-_kuzqt69'
2020-09-20T20:08:35,772     Running setup.py (path:/tmp/pip-wheel-facfne7j/propka/setup.py) egg_info for package propka
2020-09-20T20:08:35,774     Created temporary directory: /tmp/pip-pip-egg-info-_fkz4w4y
2020-09-20T20:08:35,775     Running command python setup.py egg_info
2020-09-20T20:08:37,860     running egg_info
2020-09-20T20:08:37,866     creating /tmp/pip-pip-egg-info-_fkz4w4y/PROPKA.egg-info
2020-09-20T20:08:37,868     writing /tmp/pip-pip-egg-info-_fkz4w4y/PROPKA.egg-info/PKG-INFO
2020-09-20T20:08:37,875     writing top-level names to /tmp/pip-pip-egg-info-_fkz4w4y/PROPKA.egg-info/top_level.txt
2020-09-20T20:08:37,877     writing entry points to /tmp/pip-pip-egg-info-_fkz4w4y/PROPKA.egg-info/entry_points.txt
2020-09-20T20:08:37,882     writing dependency_links to /tmp/pip-pip-egg-info-_fkz4w4y/PROPKA.egg-info/dependency_links.txt
2020-09-20T20:08:37,886     writing manifest file '/tmp/pip-pip-egg-info-_fkz4w4y/PROPKA.egg-info/SOURCES.txt'
2020-09-20T20:08:38,245     reading manifest file '/tmp/pip-pip-egg-info-_fkz4w4y/PROPKA.egg-info/SOURCES.txt'
2020-09-20T20:08:38,248     reading manifest template 'MANIFEST.in'
2020-09-20T20:08:38,257     writing manifest file '/tmp/pip-pip-egg-info-_fkz4w4y/PROPKA.egg-info/SOURCES.txt'
2020-09-20T20:08:38,391   Source in /tmp/pip-wheel-facfne7j/propka has version 3.1.0, which satisfies requirement propka==3.1.0 from https://files.pythonhosted.org/packages/a3/7b/e935ce37cbf9ac8fe23ec05f8072fb3a63582b20fb01ef0c24502b5d10ba/PROPKA-3.1.0.tar.gz#sha256=ada690067c5ad9ca6be412491380929e5275fa41166aa1fb2c820fcc2dfdb619
2020-09-20T20:08:38,392   Removed propka==3.1.0 from https://files.pythonhosted.org/packages/a3/7b/e935ce37cbf9ac8fe23ec05f8072fb3a63582b20fb01ef0c24502b5d10ba/PROPKA-3.1.0.tar.gz#sha256=ada690067c5ad9ca6be412491380929e5275fa41166aa1fb2c820fcc2dfdb619 from build tracker '/tmp/pip-req-tracker-_kuzqt69'
2020-09-20T20:08:38,397 Building wheels for collected packages: propka
2020-09-20T20:08:38,406   Created temporary directory: /tmp/pip-wheel-5xml2htg
2020-09-20T20:08:38,407   Building wheel for propka (setup.py): started
2020-09-20T20:08:38,407   Destination directory: /tmp/pip-wheel-5xml2htg
2020-09-20T20:08:38,408   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-facfne7j/propka/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-facfne7j/propka/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-5xml2htg
2020-09-20T20:08:40,592   running bdist_wheel
2020-09-20T20:08:40,607   running build
2020-09-20T20:08:40,608   running build_py
2020-09-20T20:08:40,955   creating build
2020-09-20T20:08:40,956   creating build/lib
2020-09-20T20:08:40,958   creating build/lib/propka
2020-09-20T20:08:40,961   copying propka/determinant.py -> build/lib/propka
2020-09-20T20:08:40,965   copying propka/determinants.py -> build/lib/propka
2020-09-20T20:08:40,971   copying propka/pdb.py -> build/lib/propka
2020-09-20T20:08:40,978   copying propka/vector_algebra.py -> build/lib/propka
2020-09-20T20:08:40,985   copying propka/group.py -> build/lib/propka
2020-09-20T20:08:40,996   copying propka/conformation_container.py -> build/lib/propka
2020-09-20T20:08:41,002   copying propka/ligand_pka_values.py -> build/lib/propka
2020-09-20T20:08:41,007   copying propka/parameters.py -> build/lib/propka
2020-09-20T20:08:41,014   copying propka/iterative.py -> build/lib/propka
2020-09-20T20:08:41,022   copying propka/hybrid36.py -> build/lib/propka
2020-09-20T20:08:41,028   copying propka/bonds.py -> build/lib/propka
2020-09-20T20:08:41,036   copying propka/run.py -> build/lib/propka
2020-09-20T20:08:41,041   copying propka/ligand.py -> build/lib/propka
2020-09-20T20:08:41,047   copying propka/calculations.py -> build/lib/propka
2020-09-20T20:08:41,054   copying propka/coupled_groups.py -> build/lib/propka
2020-09-20T20:08:41,061   copying propka/atom.py -> build/lib/propka
2020-09-20T20:08:41,069   copying propka/protonate.py -> build/lib/propka
2020-09-20T20:08:41,077   copying propka/version.py -> build/lib/propka
2020-09-20T20:08:41,083   copying propka/lib.py -> build/lib/propka
2020-09-20T20:08:41,088   copying propka/__init__.py -> build/lib/propka
2020-09-20T20:08:41,092   copying propka/output.py -> build/lib/propka
2020-09-20T20:08:41,100   copying propka/molecular_container.py -> build/lib/propka
2020-09-20T20:08:41,109   creating build/lib/Tests
2020-09-20T20:08:41,112   copying Tests/hybrid36.py -> build/lib/Tests
2020-09-20T20:08:41,118   copying Tests/runtest.py -> build/lib/Tests
2020-09-20T20:08:41,122   copying Tests/__init__.py -> build/lib/Tests
2020-09-20T20:08:41,126   copying Tests/pkacalc_test.py -> build/lib/Tests
2020-09-20T20:08:41,135   copying propka/protein_bonds.dat -> build/lib/propka
2020-09-20T20:08:41,140   copying propka/propka.cfg -> build/lib/propka
2020-09-20T20:08:41,156   installing to build/bdist.linux-armv7l/wheel
2020-09-20T20:08:41,157   running install
2020-09-20T20:08:41,159   running install_lib
2020-09-20T20:08:41,166   creating build/bdist.linux-armv7l
2020-09-20T20:08:41,167   creating build/bdist.linux-armv7l/wheel
2020-09-20T20:08:41,172   creating build/bdist.linux-armv7l/wheel/propka
2020-09-20T20:08:41,174   copying build/lib/propka/determinant.py -> build/bdist.linux-armv7l/wheel/propka
2020-09-20T20:08:41,179   copying build/lib/propka/determinants.py -> build/bdist.linux-armv7l/wheel/propka
2020-09-20T20:08:41,184   copying build/lib/propka/protein_bonds.dat -> build/bdist.linux-armv7l/wheel/propka
2020-09-20T20:08:41,189   copying build/lib/propka/pdb.py -> build/bdist.linux-armv7l/wheel/propka
2020-09-20T20:08:41,194   copying build/lib/propka/vector_algebra.py -> build/bdist.linux-armv7l/wheel/propka
2020-09-20T20:08:41,201   copying build/lib/propka/group.py -> build/bdist.linux-armv7l/wheel/propka
2020-09-20T20:08:41,211   copying build/lib/propka/conformation_container.py -> build/bdist.linux-armv7l/wheel/propka
2020-09-20T20:08:41,245   copying build/lib/propka/ligand_pka_values.py -> build/bdist.linux-armv7l/wheel/propka
2020-09-20T20:08:41,252   copying build/lib/propka/parameters.py -> build/bdist.linux-armv7l/wheel/propka
2020-09-20T20:08:41,261   copying build/lib/propka/iterative.py -> build/bdist.linux-armv7l/wheel/propka
2020-09-20T20:08:41,268   copying build/lib/propka/hybrid36.py -> build/bdist.linux-armv7l/wheel/propka
2020-09-20T20:08:41,272   copying build/lib/propka/bonds.py -> build/bdist.linux-armv7l/wheel/propka
2020-09-20T20:08:41,279   copying build/lib/propka/run.py -> build/bdist.linux-armv7l/wheel/propka
2020-09-20T20:08:41,283   copying build/lib/propka/ligand.py -> build/bdist.linux-armv7l/wheel/propka
2020-09-20T20:08:41,290   copying build/lib/propka/calculations.py -> build/bdist.linux-armv7l/wheel/propka
2020-09-20T20:08:41,299   copying build/lib/propka/coupled_groups.py -> build/bdist.linux-armv7l/wheel/propka
2020-09-20T20:08:41,306   copying build/lib/propka/atom.py -> build/bdist.linux-armv7l/wheel/propka
2020-09-20T20:08:41,312   copying build/lib/propka/protonate.py -> build/bdist.linux-armv7l/wheel/propka
2020-09-20T20:08:41,318   copying build/lib/propka/version.py -> build/bdist.linux-armv7l/wheel/propka
2020-09-20T20:08:41,323   copying build/lib/propka/propka.cfg -> build/bdist.linux-armv7l/wheel/propka
2020-09-20T20:08:41,330   copying build/lib/propka/lib.py -> build/bdist.linux-armv7l/wheel/propka
2020-09-20T20:08:41,337   copying build/lib/propka/__init__.py -> build/bdist.linux-armv7l/wheel/propka
2020-09-20T20:08:41,343   copying build/lib/propka/output.py -> build/bdist.linux-armv7l/wheel/propka
2020-09-20T20:08:41,349   copying build/lib/propka/molecular_container.py -> build/bdist.linux-armv7l/wheel/propka
2020-09-20T20:08:41,356   creating build/bdist.linux-armv7l/wheel/Tests
2020-09-20T20:08:41,358   copying build/lib/Tests/hybrid36.py -> build/bdist.linux-armv7l/wheel/Tests
2020-09-20T20:08:41,362   copying build/lib/Tests/runtest.py -> build/bdist.linux-armv7l/wheel/Tests
2020-09-20T20:08:41,367   copying build/lib/Tests/__init__.py -> build/bdist.linux-armv7l/wheel/Tests
2020-09-20T20:08:41,372   copying build/lib/Tests/pkacalc_test.py -> build/bdist.linux-armv7l/wheel/Tests
2020-09-20T20:08:41,376   running install_egg_info
2020-09-20T20:08:41,424   running egg_info
2020-09-20T20:08:41,426   writing top-level names to PROPKA.egg-info/top_level.txt
2020-09-20T20:08:41,429   writing entry points to PROPKA.egg-info/entry_points.txt
2020-09-20T20:08:41,431   writing dependency_links to PROPKA.egg-info/dependency_links.txt
2020-09-20T20:08:41,434   writing PROPKA.egg-info/PKG-INFO
2020-09-20T20:08:41,449   reading manifest file 'PROPKA.egg-info/SOURCES.txt'
2020-09-20T20:08:41,455   reading manifest template 'MANIFEST.in'
2020-09-20T20:08:41,465   writing manifest file 'PROPKA.egg-info/SOURCES.txt'
2020-09-20T20:08:41,468   Copying PROPKA.egg-info to build/bdist.linux-armv7l/wheel/PROPKA-3.1.0-py3.5.egg-info
2020-09-20T20:08:41,498   running install_scripts
2020-09-20T20:08:41,686   creating build/bdist.linux-armv7l/wheel/PROPKA-3.1.0.dist-info/WHEEL
2020-09-20T20:08:42,043   Building wheel for propka (setup.py): finished with status 'done'
2020-09-20T20:08:42,049   Created wheel for propka: filename=PROPKA-3.1.0-py2.py3-none-any.whl size=75728 sha256=c75dfa5071ac371c44cb8a1b8f914c54fac764802a8727e85a8c956e8ae38ff8
2020-09-20T20:08:42,050   Stored in directory: /tmp/pip-ephem-wheel-cache-he8nx79r/wheels/dc/26/82/4e17ad7410fe90b83acbf4eedf318ce4f99208bc0476328fca
2020-09-20T20:08:42,053 Successfully built propka
2020-09-20T20:08:42,075 Removed build tracker: '/tmp/pip-req-tracker-_kuzqt69'