2020-09-22T10:45:32,711 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-09-22T10:45:33,648 Created temporary directory: /tmp/pip-ephem-wheel-cache-9vrdohnr
2020-09-22T10:45:33,653 Created temporary directory: /tmp/pip-req-tracker-k0h33tju
2020-09-22T10:45:33,654 Initialized build tracking at /tmp/pip-req-tracker-k0h33tju
2020-09-22T10:45:33,654 Created build tracker: /tmp/pip-req-tracker-k0h33tju
2020-09-22T10:45:33,655 Entered build tracker: /tmp/pip-req-tracker-k0h33tju
2020-09-22T10:45:33,656 Created temporary directory: /tmp/pip-wheel-a2ywzbmn
2020-09-22T10:45:33,675 Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com
2020-09-22T10:45:33,678 2 location(s) to search for versions of scipion-em-cistem:
2020-09-22T10:45:33,678 * https://pypi.org/simple/scipion-em-cistem/
2020-09-22T10:45:33,678 * https://pypi.ngc.nvidia.com/scipion-em-cistem/
2020-09-22T10:45:33,679 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-cistem/
2020-09-22T10:45:33,681 Getting page https://pypi.org/simple/scipion-em-cistem/
2020-09-22T10:45:33,685 Found index url https://pypi.org/simple
2020-09-22T10:45:34,012   Found link https://files.pythonhosted.org/packages/c3/15/606722c27c6672da04caecd7dda68e5cb8ef027ea93e2e8800822cabf5b3/scipion-em-cistem-1.0.0.tar.gz#sha256=9b30ed9344208df397e38a636c32f72228f36a9dd014175406256ee58d647863 (from https://pypi.org/simple/scipion-em-cistem/), version: 1.0.0
2020-09-22T10:45:34,014   Found link https://files.pythonhosted.org/packages/c7/ed/5924155844a2076607d8921b0644e1c8efaa4900e9730d527aced1153076/scipion-em-cistem-1.0.1.tar.gz#sha256=7efbf496809cbb46e87327aeb434735e4aff4634cceb0a63d0e19fcd7ff9026f (from https://pypi.org/simple/scipion-em-cistem/), version: 1.0.1
2020-09-22T10:45:34,014   Found link https://files.pythonhosted.org/packages/01/94/d1ae9dc3e3e3474c5cfaf5fefddb6cdb516af09928d9c96c9243260da331/scipion-em-cistem-1.0.2.tar.gz#sha256=18cdfec753f54af1168ef20f474e836786bd745d1ef988dfd075cb4422f1ae85 (from https://pypi.org/simple/scipion-em-cistem/), version: 1.0.2
2020-09-22T10:45:34,015   Found link https://files.pythonhosted.org/packages/ff/0c/2bf4abb71df86bbde18eb6210ac8a27868a73f78764afd3c5ec7e0f4b37a/scipion-em-cistem-1.0.3.tar.gz#sha256=0a5fcf02dee769b7531e0cdfef0144ff87cb0dfe7c958e0704bb260d2f4512ac (from https://pypi.org/simple/scipion-em-cistem/), version: 1.0.3
2020-09-22T10:45:34,016   Found link https://files.pythonhosted.org/packages/10/a1/1903b6ac0dc88a41970e5ae8a8412024b67600cc6da9fde62c509d91272e/scipion-em-cistem-3.0.3.tar.gz#sha256=acd84a4604ec492375b3d6bd8e59f64557159a8b15f68e81938a2984bc5f998f (from https://pypi.org/simple/scipion-em-cistem/), version: 3.0.3
2020-09-22T10:45:34,017   Found link https://files.pythonhosted.org/packages/f2/9e/aabfb292bd8bb1de3b520813928fc0726347dfaf4f504d3d605f5a7abd03/scipion-em-cistem-3.0.4.tar.gz#sha256=51df2fbc10806229fa23309436b8ccf01b6519330c908ff8d9e2e6bb81432d50 (from https://pypi.org/simple/scipion-em-cistem/), version: 3.0.4
2020-09-22T10:45:34,018   Found link https://files.pythonhosted.org/packages/f2/33/8d9a14c0f8ffee4a907baed397f66d5886660fe4843ea91bc8cfd849f373/scipion-em-cistem-3.0.5.tar.gz#sha256=600efb951d657b9f7e4b1ed6d2aedbadc9907c724322d909160f188ee9063976 (from https://pypi.org/simple/scipion-em-cistem/), version: 3.0.5
2020-09-22T10:45:34,019   Found link https://files.pythonhosted.org/packages/e2/4b/6a66c649649ee52b60471419111fa63d22c65f0f750104762193ef3b7b2d/scipion-em-cistem-3.0.6.tar.gz#sha256=c946e4342eb6b8399a1714a5860a695733e57097a1f12225444acea2b6be3433 (from https://pypi.org/simple/scipion-em-cistem/), version: 3.0.6
2020-09-22T10:45:34,020   Found link https://files.pythonhosted.org/packages/82/4b/f335e4c6dd90c21be0e1e1edb3d1211670bba6ad8bb9159622f6683c541e/scipion-em-cistem-3.0.7.tar.gz#sha256=18c4e9fcdc485fe7996248393ac7e9bcc83ab9da5f0222c3600a324028f7451f (from https://pypi.org/simple/scipion-em-cistem/), version: 3.0.7
2020-09-22T10:45:34,021 Fetching project page and analyzing links: https://pypi.ngc.nvidia.com/scipion-em-cistem/
2020-09-22T10:45:34,021 Getting page https://pypi.ngc.nvidia.com/scipion-em-cistem/
2020-09-22T10:45:34,024 Found index url https://pypi.ngc.nvidia.com
2020-09-22T10:45:34,881 Could not fetch URL https://pypi.ngc.nvidia.com/scipion-em-cistem/: 404 Client Error: Not Found for url: https://developer.download.nvidia.com/compute/redist/scipion-em-cistem/ - skipping
2020-09-22T10:45:34,901 Given no hashes to check 1 links for project 'scipion-em-cistem': discarding no candidates
2020-09-22T10:45:34,903 Using version 3.0.7 (newest of versions: 3.0.7)
2020-09-22T10:45:34,912 Collecting scipion-em-cistem==3.0.7
2020-09-22T10:45:34,917   Created temporary directory: /tmp/pip-unpack-mh82x7nc
2020-09-22T10:45:35,191   Downloading scipion-em-cistem-3.0.7.tar.gz (156 kB)
2020-09-22T10:45:35,629   Added scipion-em-cistem==3.0.7 from https://files.pythonhosted.org/packages/82/4b/f335e4c6dd90c21be0e1e1edb3d1211670bba6ad8bb9159622f6683c541e/scipion-em-cistem-3.0.7.tar.gz#sha256=18c4e9fcdc485fe7996248393ac7e9bcc83ab9da5f0222c3600a324028f7451f to build tracker '/tmp/pip-req-tracker-k0h33tju'
2020-09-22T10:45:35,631     Running setup.py (path:/tmp/pip-wheel-a2ywzbmn/scipion-em-cistem/setup.py) egg_info for package scipion-em-cistem
2020-09-22T10:45:35,633     Created temporary directory: /tmp/pip-pip-egg-info-bhzy82wx
2020-09-22T10:45:35,635     Running command python setup.py egg_info
2020-09-22T10:45:38,097     running egg_info
2020-09-22T10:45:38,103     creating /tmp/pip-pip-egg-info-bhzy82wx/scipion_em_cistem.egg-info
2020-09-22T10:45:38,106     writing /tmp/pip-pip-egg-info-bhzy82wx/scipion_em_cistem.egg-info/PKG-INFO
2020-09-22T10:45:38,111     writing dependency_links to /tmp/pip-pip-egg-info-bhzy82wx/scipion_em_cistem.egg-info/dependency_links.txt
2020-09-22T10:45:38,113     writing entry points to /tmp/pip-pip-egg-info-bhzy82wx/scipion_em_cistem.egg-info/entry_points.txt
2020-09-22T10:45:38,116     writing requirements to /tmp/pip-pip-egg-info-bhzy82wx/scipion_em_cistem.egg-info/requires.txt
2020-09-22T10:45:38,120     writing top-level names to /tmp/pip-pip-egg-info-bhzy82wx/scipion_em_cistem.egg-info/top_level.txt
2020-09-22T10:45:38,124     writing manifest file '/tmp/pip-pip-egg-info-bhzy82wx/scipion_em_cistem.egg-info/SOURCES.txt'
2020-09-22T10:45:38,499     reading manifest file '/tmp/pip-pip-egg-info-bhzy82wx/scipion_em_cistem.egg-info/SOURCES.txt'
2020-09-22T10:45:38,502     reading manifest template 'MANIFEST.in'
2020-09-22T10:45:38,512     writing manifest file '/tmp/pip-pip-egg-info-bhzy82wx/scipion_em_cistem.egg-info/SOURCES.txt'
2020-09-22T10:45:38,655   Source in /tmp/pip-wheel-a2ywzbmn/scipion-em-cistem has version 3.0.7, which satisfies requirement scipion-em-cistem==3.0.7 from https://files.pythonhosted.org/packages/82/4b/f335e4c6dd90c21be0e1e1edb3d1211670bba6ad8bb9159622f6683c541e/scipion-em-cistem-3.0.7.tar.gz#sha256=18c4e9fcdc485fe7996248393ac7e9bcc83ab9da5f0222c3600a324028f7451f
2020-09-22T10:45:38,656   Removed scipion-em-cistem==3.0.7 from https://files.pythonhosted.org/packages/82/4b/f335e4c6dd90c21be0e1e1edb3d1211670bba6ad8bb9159622f6683c541e/scipion-em-cistem-3.0.7.tar.gz#sha256=18c4e9fcdc485fe7996248393ac7e9bcc83ab9da5f0222c3600a324028f7451f from build tracker '/tmp/pip-req-tracker-k0h33tju'
2020-09-22T10:45:38,661 Building wheels for collected packages: scipion-em-cistem
2020-09-22T10:45:38,671   Created temporary directory: /tmp/pip-wheel-tk_t7gwa
2020-09-22T10:45:38,672   Building wheel for scipion-em-cistem (setup.py): started
2020-09-22T10:45:38,673   Destination directory: /tmp/pip-wheel-tk_t7gwa
2020-09-22T10:45:38,673   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-a2ywzbmn/scipion-em-cistem/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-a2ywzbmn/scipion-em-cistem/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-tk_t7gwa
2020-09-22T10:45:41,032   running bdist_wheel
2020-09-22T10:45:41,048   running build
2020-09-22T10:45:41,048   running build_py
2020-09-22T10:45:41,405   creating build
2020-09-22T10:45:41,406   creating build/lib
2020-09-22T10:45:41,407   creating build/lib/cistem
2020-09-22T10:45:41,410   copying cistem/bibtex.py -> build/lib/cistem
2020-09-22T10:45:41,416   copying cistem/constants.py -> build/lib/cistem
2020-09-22T10:45:41,420   copying cistem/__init__.py -> build/lib/cistem
2020-09-22T10:45:41,424   copying cistem/viewers.py -> build/lib/cistem
2020-09-22T10:45:41,429   copying cistem/wizards.py -> build/lib/cistem
2020-09-22T10:45:41,435   creating build/lib/cistem/tests
2020-09-22T10:45:41,437   copying cistem/tests/test_protocols_cistem_movies.py -> build/lib/cistem/tests
2020-09-22T10:45:41,443   copying cistem/tests/__init__.py -> build/lib/cistem/tests
2020-09-22T10:45:41,448   copying cistem/tests/test_protocols_cistem.py -> build/lib/cistem/tests
2020-09-22T10:45:41,457   creating build/lib/cistem/convert
2020-09-22T10:45:41,461   copying cistem/convert/convert.py -> build/lib/cistem/convert
2020-09-22T10:45:41,468   copying cistem/convert/dataimport.py -> build/lib/cistem/convert
2020-09-22T10:45:41,473   copying cistem/convert/__init__.py -> build/lib/cistem/convert
2020-09-22T10:45:41,480   creating build/lib/cistem/protocols
2020-09-22T10:45:41,483   copying cistem/protocols/protocol_picking.py -> build/lib/cistem/protocols
2020-09-22T10:45:41,490   copying cistem/protocols/protocol_unblur.py -> build/lib/cistem/protocols
2020-09-22T10:45:41,498   copying cistem/protocols/protocol_abinitio.py -> build/lib/cistem/protocols
2020-09-22T10:45:41,506   copying cistem/protocols/program_ctffind.py -> build/lib/cistem/protocols
2020-09-22T10:45:41,514   copying cistem/protocols/protocol_ctffind.py -> build/lib/cistem/protocols
2020-09-22T10:45:41,523   copying cistem/protocols/protocol_refine2d.py -> build/lib/cistem/protocols
2020-09-22T10:45:41,532   copying cistem/protocols/protocol_ts_ctffind.py -> build/lib/cistem/protocols
2020-09-22T10:45:41,537   copying cistem/protocols/__init__.py -> build/lib/cistem/protocols
2020-09-22T10:45:41,544   copying cistem/cistem_logo.png -> build/lib/cistem
2020-09-22T10:45:41,560   copying cistem/protocols.conf -> build/lib/cistem
2020-09-22T10:45:41,578   installing to build/bdist.linux-armv7l/wheel
2020-09-22T10:45:41,579   running install
2020-09-22T10:45:41,581   running install_lib
2020-09-22T10:45:41,590   creating build/bdist.linux-armv7l
2020-09-22T10:45:41,591   creating build/bdist.linux-armv7l/wheel
2020-09-22T10:45:41,595   creating build/bdist.linux-armv7l/wheel/cistem
2020-09-22T10:45:41,598   copying build/lib/cistem/bibtex.py -> build/bdist.linux-armv7l/wheel/cistem
2020-09-22T10:45:41,604   creating build/bdist.linux-armv7l/wheel/cistem/tests
2020-09-22T10:45:41,607   copying build/lib/cistem/tests/test_protocols_cistem_movies.py -> build/bdist.linux-armv7l/wheel/cistem/tests
2020-09-22T10:45:41,614   copying build/lib/cistem/tests/__init__.py -> build/bdist.linux-armv7l/wheel/cistem/tests
2020-09-22T10:45:41,619   copying build/lib/cistem/tests/test_protocols_cistem.py -> build/bdist.linux-armv7l/wheel/cistem/tests
2020-09-22T10:45:41,627   copying build/lib/cistem/constants.py -> build/bdist.linux-armv7l/wheel/cistem
2020-09-22T10:45:41,631   copying build/lib/cistem/protocols.conf -> build/bdist.linux-armv7l/wheel/cistem
2020-09-22T10:45:41,637   creating build/bdist.linux-armv7l/wheel/cistem/convert
2020-09-22T10:45:41,639   copying build/lib/cistem/convert/convert.py -> build/bdist.linux-armv7l/wheel/cistem/convert
2020-09-22T10:45:41,645   copying build/lib/cistem/convert/dataimport.py -> build/bdist.linux-armv7l/wheel/cistem/convert
2020-09-22T10:45:41,651   copying build/lib/cistem/convert/__init__.py -> build/bdist.linux-armv7l/wheel/cistem/convert
2020-09-22T10:45:41,657   copying build/lib/cistem/cistem_logo.png -> build/bdist.linux-armv7l/wheel/cistem
2020-09-22T10:45:41,671   copying build/lib/cistem/__init__.py -> build/bdist.linux-armv7l/wheel/cistem
2020-09-22T10:45:41,676   copying build/lib/cistem/viewers.py -> build/bdist.linux-armv7l/wheel/cistem
2020-09-22T10:45:41,682   creating build/bdist.linux-armv7l/wheel/cistem/protocols
2020-09-22T10:45:41,684   copying build/lib/cistem/protocols/protocol_picking.py -> build/bdist.linux-armv7l/wheel/cistem/protocols
2020-09-22T10:45:41,693   copying build/lib/cistem/protocols/protocol_unblur.py -> build/bdist.linux-armv7l/wheel/cistem/protocols
2020-09-22T10:45:41,701   copying build/lib/cistem/protocols/protocol_abinitio.py -> build/bdist.linux-armv7l/wheel/cistem/protocols
2020-09-22T10:45:41,709   copying build/lib/cistem/protocols/program_ctffind.py -> build/bdist.linux-armv7l/wheel/cistem/protocols
2020-09-22T10:45:41,715   copying build/lib/cistem/protocols/protocol_ctffind.py -> build/bdist.linux-armv7l/wheel/cistem/protocols
2020-09-22T10:45:41,721   copying build/lib/cistem/protocols/protocol_refine2d.py -> build/bdist.linux-armv7l/wheel/cistem/protocols
2020-09-22T10:45:41,731   copying build/lib/cistem/protocols/protocol_ts_ctffind.py -> build/bdist.linux-armv7l/wheel/cistem/protocols
2020-09-22T10:45:41,738   copying build/lib/cistem/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/cistem/protocols
2020-09-22T10:45:41,743   copying build/lib/cistem/wizards.py -> build/bdist.linux-armv7l/wheel/cistem
2020-09-22T10:45:41,749   running install_egg_info
2020-09-22T10:45:41,797   running egg_info
2020-09-22T10:45:41,798   writing entry points to scipion_em_cistem.egg-info/entry_points.txt
2020-09-22T10:45:41,801   writing requirements to scipion_em_cistem.egg-info/requires.txt
2020-09-22T10:45:41,804   writing top-level names to scipion_em_cistem.egg-info/top_level.txt
2020-09-22T10:45:41,807   writing scipion_em_cistem.egg-info/PKG-INFO
2020-09-22T10:45:41,811   writing dependency_links to scipion_em_cistem.egg-info/dependency_links.txt
2020-09-22T10:45:41,825   reading manifest file 'scipion_em_cistem.egg-info/SOURCES.txt'
2020-09-22T10:45:41,831   reading manifest template 'MANIFEST.in'
2020-09-22T10:45:41,842   writing manifest file 'scipion_em_cistem.egg-info/SOURCES.txt'
2020-09-22T10:45:41,845   Copying scipion_em_cistem.egg-info to build/bdist.linux-armv7l/wheel/scipion_em_cistem-3.0.7-py3.5.egg-info
2020-09-22T10:45:41,875   running install_scripts
2020-09-22T10:45:42,097   creating build/bdist.linux-armv7l/wheel/scipion_em_cistem-3.0.7.dist-info/WHEEL
2020-09-22T10:45:42,469   Building wheel for scipion-em-cistem (setup.py): finished with status 'done'
2020-09-22T10:45:42,476   Created wheel for scipion-em-cistem: filename=scipion_em_cistem-3.0.7-py3-none-any.whl size=154164 sha256=46df393892c3c7251b097b7e779bcac889cd4e9bb80b2de7646b21a8468f37fb
2020-09-22T10:45:42,477   Stored in directory: /tmp/pip-ephem-wheel-cache-9vrdohnr/wheels/9c/90/46/e10fe8839e80ff2fba2c13dad0c98112a53008f895e6700bb5
2020-09-22T10:45:42,481 Successfully built scipion-em-cistem
2020-09-22T10:45:42,515 Removed build tracker: '/tmp/pip-req-tracker-k0h33tju'