2020-09-22T11:21:48,179 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-09-22T11:21:48,844 Created temporary directory: /tmp/pip-ephem-wheel-cache-xp_fnfv0
2020-09-22T11:21:48,849 Created temporary directory: /tmp/pip-req-tracker-mqnjwa6p
2020-09-22T11:21:48,850 Initialized build tracking at /tmp/pip-req-tracker-mqnjwa6p
2020-09-22T11:21:48,850 Created build tracker: /tmp/pip-req-tracker-mqnjwa6p
2020-09-22T11:21:48,850 Entered build tracker: /tmp/pip-req-tracker-mqnjwa6p
2020-09-22T11:21:48,852 Created temporary directory: /tmp/pip-wheel-7u3z3bqw
2020-09-22T11:21:48,871 Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com
2020-09-22T11:21:48,874 2 location(s) to search for versions of scipion-em-gautomatch:
2020-09-22T11:21:48,874 * https://pypi.org/simple/scipion-em-gautomatch/
2020-09-22T11:21:48,874 * https://pypi.ngc.nvidia.com/scipion-em-gautomatch/
2020-09-22T11:21:48,875 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-gautomatch/
2020-09-22T11:21:48,877 Getting page https://pypi.org/simple/scipion-em-gautomatch/
2020-09-22T11:21:48,881 Found index url https://pypi.org/simple
2020-09-22T11:21:49,209   Found link https://files.pythonhosted.org/packages/8d/ca/787490e3457272a4ae4afbe10d9261e07e827004bf498f8647bd46785b40/scipion-em-gautomatch-1.0.0.tar.gz#sha256=2092efd507ccc423448f6b55be3b0f3168ee09717b89c18dc2f76c6fb9e1ba9d (from https://pypi.org/simple/scipion-em-gautomatch/), version: 1.0.0
2020-09-22T11:21:49,211   Found link https://files.pythonhosted.org/packages/00/b6/95aad48587b2a33c4efcb4c081f44078edca2894273ac3e91f247e7bb338/scipion-em-gautomatch-1.0.1.tar.gz#sha256=44a8b51f0df0cd5cd515fa246eccc80f1e81d1366bf96ac15416bc765e61ea0a (from https://pypi.org/simple/scipion-em-gautomatch/), version: 1.0.1
2020-09-22T11:21:49,212   Found link https://files.pythonhosted.org/packages/ce/a0/6e9e519b8c4477ea3822835d83d903cf24ad6486e3926ef7c151ca39bee7/scipion-em-gautomatch-1.0.2.tar.gz#sha256=b4e691d9065b35663cbb759dce94f82722fe92809768c890b38ebf22e46cd053 (from https://pypi.org/simple/scipion-em-gautomatch/), version: 1.0.2
2020-09-22T11:21:49,213   Found link https://files.pythonhosted.org/packages/4b/1f/cceeaf57c2bb54916771123a62562ec1fabb8ed9cf2614ad871f2df418e1/scipion-em-gautomatch-1.0.4.tar.gz#sha256=8883be3bcb9f754c4a887bfb73bf9c63ff94b41f461284c00a2f87b35d4d0ebf (from https://pypi.org/simple/scipion-em-gautomatch/), version: 1.0.4
2020-09-22T11:21:49,214   Found link https://files.pythonhosted.org/packages/43/fb/ad471d81b79d9a729f75b10fd3e6ef2846ae19bafa650dddd031b49f1139/scipion-em-gautomatch-1.0.5b0.tar.gz#sha256=22e0d138be91bb41ec0793526bbf8c65cb007168f2576f57b29025269ae29c5d (from https://pypi.org/simple/scipion-em-gautomatch/), version: 1.0.5b0
2020-09-22T11:21:49,214   Found link https://files.pythonhosted.org/packages/22/91/240f45f422afaa4e42109fa10243e38af900bbf325aa53f0114481fe3186/scipion-em-gautomatch-1.0.6.tar.gz#sha256=4a28d65d1c4ae0f3c6ed5a88f37ff96194b73e3958667e27801a422d93ea74f3 (from https://pypi.org/simple/scipion-em-gautomatch/), version: 1.0.6
2020-09-22T11:21:49,215   Found link https://files.pythonhosted.org/packages/c6/bf/c348297edcee7fd4318a6933fdfbb0db0e4c92d106011df2c416eda38b00/scipion-em-gautomatch-1.0.7.tar.gz#sha256=3369535f00b51b77f9f41bb937d3691abf1ca2c3f4a2ea47a41d98074d3ebfb6 (from https://pypi.org/simple/scipion-em-gautomatch/), version: 1.0.7
2020-09-22T11:21:49,216   Found link https://files.pythonhosted.org/packages/7b/b0/0d650f8588eaedfbb5291f9523813509ef164b0aa6d1fe73dc6ed4c03bd0/scipion-em-gautomatch-1.0.8.tar.gz#sha256=290660ec0a65d223743880a74c17e55b6176d52db9e02e684659b6fd2020dc3b (from https://pypi.org/simple/scipion-em-gautomatch/), version: 1.0.8
2020-09-22T11:21:49,217   Found link https://files.pythonhosted.org/packages/bb/af/b0dea4c4f8796b0a05a017c56ba332cc89f4776c700d68670e3f09235f0f/scipion-em-gautomatch-1.0.9.tar.gz#sha256=3273246ee6bce6ae4f877776044d1b46f3f4f461c2d2462f7d62343a7be2093b (from https://pypi.org/simple/scipion-em-gautomatch/), version: 1.0.9
2020-09-22T11:21:49,218   Found link https://files.pythonhosted.org/packages/0c/08/f2c933be684f47b7353c8f85a9127077f78e8efedaa599826e8b59e628b7/scipion-em-gautomatch-1.0.10.tar.gz#sha256=aa01efd37c8ecd6543f790388a5408a95fc608d12a38788f9c19e5e578230e84 (from https://pypi.org/simple/scipion-em-gautomatch/), version: 1.0.10
2020-09-22T11:21:49,219   Found link https://files.pythonhosted.org/packages/b2/ce/87303ad7e72c877d68e4262c09e02486d61fbbd86b9b9b7316dc1274a429/scipion-em-gautomatch-3.0.10.tar.gz#sha256=68620b50c0bd85a2916efb9a93649de37a2c50b0fe9e2f1925d6cb5239f9512e (from https://pypi.org/simple/scipion-em-gautomatch/), version: 3.0.10
2020-09-22T11:21:49,220   Found link https://files.pythonhosted.org/packages/ea/87/9cc39e78b793b9781f7e1ab06a4e978d2c3ec0ec55c44dbb299be7f3d810/scipion-em-gautomatch-3.0.11.tar.gz#sha256=8580a80b2e3c44a4a6e5712fe285c59efa3fe31e07df2c625ba0152008703386 (from https://pypi.org/simple/scipion-em-gautomatch/), version: 3.0.11
2020-09-22T11:21:49,220 Fetching project page and analyzing links: https://pypi.ngc.nvidia.com/scipion-em-gautomatch/
2020-09-22T11:21:49,221 Getting page https://pypi.ngc.nvidia.com/scipion-em-gautomatch/
2020-09-22T11:21:49,224 Found index url https://pypi.ngc.nvidia.com
2020-09-22T11:21:50,197 Could not fetch URL https://pypi.ngc.nvidia.com/scipion-em-gautomatch/: 404 Client Error: Not Found for url: https://developer.download.nvidia.com/compute/redist/scipion-em-gautomatch/ - skipping
2020-09-22T11:21:50,221 Given no hashes to check 1 links for project 'scipion-em-gautomatch': discarding no candidates
2020-09-22T11:21:50,223 Using version 3.0.11 (newest of versions: 3.0.11)
2020-09-22T11:21:50,232 Collecting scipion-em-gautomatch==3.0.11
2020-09-22T11:21:50,237   Created temporary directory: /tmp/pip-unpack-5hkeuron
2020-09-22T11:21:50,492   Downloading scipion-em-gautomatch-3.0.11.tar.gz (36 kB)
2020-09-22T11:21:50,693   Added scipion-em-gautomatch==3.0.11 from https://files.pythonhosted.org/packages/ea/87/9cc39e78b793b9781f7e1ab06a4e978d2c3ec0ec55c44dbb299be7f3d810/scipion-em-gautomatch-3.0.11.tar.gz#sha256=8580a80b2e3c44a4a6e5712fe285c59efa3fe31e07df2c625ba0152008703386 to build tracker '/tmp/pip-req-tracker-mqnjwa6p'
2020-09-22T11:21:50,696     Running setup.py (path:/tmp/pip-wheel-7u3z3bqw/scipion-em-gautomatch/setup.py) egg_info for package scipion-em-gautomatch
2020-09-22T11:21:50,697     Created temporary directory: /tmp/pip-pip-egg-info-q446s8c3
2020-09-22T11:21:50,698     Running command python setup.py egg_info
2020-09-22T11:21:53,037     running egg_info
2020-09-22T11:21:53,044     creating /tmp/pip-pip-egg-info-q446s8c3/scipion_em_gautomatch.egg-info
2020-09-22T11:21:53,048     writing dependency_links to /tmp/pip-pip-egg-info-q446s8c3/scipion_em_gautomatch.egg-info/dependency_links.txt
2020-09-22T11:21:53,050     writing entry points to /tmp/pip-pip-egg-info-q446s8c3/scipion_em_gautomatch.egg-info/entry_points.txt
2020-09-22T11:21:53,052     writing top-level names to /tmp/pip-pip-egg-info-q446s8c3/scipion_em_gautomatch.egg-info/top_level.txt
2020-09-22T11:21:53,055     writing /tmp/pip-pip-egg-info-q446s8c3/scipion_em_gautomatch.egg-info/PKG-INFO
2020-09-22T11:21:53,059     writing requirements to /tmp/pip-pip-egg-info-q446s8c3/scipion_em_gautomatch.egg-info/requires.txt
2020-09-22T11:21:53,063     writing manifest file '/tmp/pip-pip-egg-info-q446s8c3/scipion_em_gautomatch.egg-info/SOURCES.txt'
2020-09-22T11:21:53,505     reading manifest file '/tmp/pip-pip-egg-info-q446s8c3/scipion_em_gautomatch.egg-info/SOURCES.txt'
2020-09-22T11:21:53,508     reading manifest template 'MANIFEST.in'
2020-09-22T11:21:53,518     writing manifest file '/tmp/pip-pip-egg-info-q446s8c3/scipion_em_gautomatch.egg-info/SOURCES.txt'
2020-09-22T11:21:53,654   Source in /tmp/pip-wheel-7u3z3bqw/scipion-em-gautomatch has version 3.0.11, which satisfies requirement scipion-em-gautomatch==3.0.11 from https://files.pythonhosted.org/packages/ea/87/9cc39e78b793b9781f7e1ab06a4e978d2c3ec0ec55c44dbb299be7f3d810/scipion-em-gautomatch-3.0.11.tar.gz#sha256=8580a80b2e3c44a4a6e5712fe285c59efa3fe31e07df2c625ba0152008703386
2020-09-22T11:21:53,656   Removed scipion-em-gautomatch==3.0.11 from https://files.pythonhosted.org/packages/ea/87/9cc39e78b793b9781f7e1ab06a4e978d2c3ec0ec55c44dbb299be7f3d810/scipion-em-gautomatch-3.0.11.tar.gz#sha256=8580a80b2e3c44a4a6e5712fe285c59efa3fe31e07df2c625ba0152008703386 from build tracker '/tmp/pip-req-tracker-mqnjwa6p'
2020-09-22T11:21:53,660 Building wheels for collected packages: scipion-em-gautomatch
2020-09-22T11:21:53,669   Created temporary directory: /tmp/pip-wheel-g6c2fyot
2020-09-22T11:21:53,670   Building wheel for scipion-em-gautomatch (setup.py): started
2020-09-22T11:21:53,671   Destination directory: /tmp/pip-wheel-g6c2fyot
2020-09-22T11:21:53,672   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-7u3z3bqw/scipion-em-gautomatch/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-7u3z3bqw/scipion-em-gautomatch/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-g6c2fyot
2020-09-22T11:21:55,868   running bdist_wheel
2020-09-22T11:21:55,884   running build
2020-09-22T11:21:55,885   running build_py
2020-09-22T11:21:56,251   creating build
2020-09-22T11:21:56,252   creating build/lib
2020-09-22T11:21:56,254   creating build/lib/gautomatch
2020-09-22T11:21:56,257   copying gautomatch/constants.py -> build/lib/gautomatch
2020-09-22T11:21:56,262   copying gautomatch/convert.py -> build/lib/gautomatch
2020-09-22T11:21:56,267   copying gautomatch/__init__.py -> build/lib/gautomatch
2020-09-22T11:21:56,272   copying gautomatch/wizards.py -> build/lib/gautomatch
2020-09-22T11:21:56,277   copying gautomatch/run_gautomatch.py -> build/lib/gautomatch
2020-09-22T11:21:56,282   copying gautomatch/viewers.py -> build/lib/gautomatch
2020-09-22T11:21:56,290   copying gautomatch/bibtex.py -> build/lib/gautomatch
2020-09-22T11:21:56,298   creating build/lib/gautomatch/protocols
2020-09-22T11:21:56,301   copying gautomatch/protocols/__init__.py -> build/lib/gautomatch/protocols
2020-09-22T11:21:56,307   copying gautomatch/protocols/protocol_gautomatch.py -> build/lib/gautomatch/protocols
2020-09-22T11:21:56,318   creating build/lib/gautomatch/tests
2020-09-22T11:21:56,321   copying gautomatch/tests/test_protocols_gautomatch.py -> build/lib/gautomatch/tests
2020-09-22T11:21:56,329   copying gautomatch/tests/__init__.py -> build/lib/gautomatch/tests
2020-09-22T11:21:56,336   copying gautomatch/protocols.conf -> build/lib/gautomatch
2020-09-22T11:21:56,360   installing to build/bdist.linux-armv7l/wheel
2020-09-22T11:21:56,361   running install
2020-09-22T11:21:56,364   running install_lib
2020-09-22T11:21:56,372   creating build/bdist.linux-armv7l
2020-09-22T11:21:56,373   creating build/bdist.linux-armv7l/wheel
2020-09-22T11:21:56,377   creating build/bdist.linux-armv7l/wheel/gautomatch
2020-09-22T11:21:56,380   creating build/bdist.linux-armv7l/wheel/gautomatch/protocols
2020-09-22T11:21:56,383   copying build/lib/gautomatch/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/gautomatch/protocols
2020-09-22T11:21:56,387   copying build/lib/gautomatch/protocols/protocol_gautomatch.py -> build/bdist.linux-armv7l/wheel/gautomatch/protocols
2020-09-22T11:21:56,395   copying build/lib/gautomatch/constants.py -> build/bdist.linux-armv7l/wheel/gautomatch
2020-09-22T11:21:56,399   copying build/lib/gautomatch/protocols.conf -> build/bdist.linux-armv7l/wheel/gautomatch
2020-09-22T11:21:56,404   copying build/lib/gautomatch/convert.py -> build/bdist.linux-armv7l/wheel/gautomatch
2020-09-22T11:21:56,413   creating build/bdist.linux-armv7l/wheel/gautomatch/tests
2020-09-22T11:21:56,415   copying build/lib/gautomatch/tests/test_protocols_gautomatch.py -> build/bdist.linux-armv7l/wheel/gautomatch/tests
2020-09-22T11:21:56,423   copying build/lib/gautomatch/tests/__init__.py -> build/bdist.linux-armv7l/wheel/gautomatch/tests
2020-09-22T11:21:56,428   copying build/lib/gautomatch/__init__.py -> build/bdist.linux-armv7l/wheel/gautomatch
2020-09-22T11:21:56,435   copying build/lib/gautomatch/wizards.py -> build/bdist.linux-armv7l/wheel/gautomatch
2020-09-22T11:21:56,442   copying build/lib/gautomatch/run_gautomatch.py -> build/bdist.linux-armv7l/wheel/gautomatch
2020-09-22T11:21:56,447   copying build/lib/gautomatch/viewers.py -> build/bdist.linux-armv7l/wheel/gautomatch
2020-09-22T11:21:56,454   copying build/lib/gautomatch/bibtex.py -> build/bdist.linux-armv7l/wheel/gautomatch
2020-09-22T11:21:56,459   running install_egg_info
2020-09-22T11:21:56,508   running egg_info
2020-09-22T11:21:56,509   writing scipion_em_gautomatch.egg-info/PKG-INFO
2020-09-22T11:21:56,514   writing entry points to scipion_em_gautomatch.egg-info/entry_points.txt
2020-09-22T11:21:56,517   writing requirements to scipion_em_gautomatch.egg-info/requires.txt
2020-09-22T11:21:56,519   writing top-level names to scipion_em_gautomatch.egg-info/top_level.txt
2020-09-22T11:21:56,521   writing dependency_links to scipion_em_gautomatch.egg-info/dependency_links.txt
2020-09-22T11:21:56,532   reading manifest file 'scipion_em_gautomatch.egg-info/SOURCES.txt'
2020-09-22T11:21:56,537   reading manifest template 'MANIFEST.in'
2020-09-22T11:21:56,547   writing manifest file 'scipion_em_gautomatch.egg-info/SOURCES.txt'
2020-09-22T11:21:56,550   Copying scipion_em_gautomatch.egg-info to build/bdist.linux-armv7l/wheel/scipion_em_gautomatch-3.0.11-py3.5.egg-info
2020-09-22T11:21:56,583   running install_scripts
2020-09-22T11:21:56,782   creating build/bdist.linux-armv7l/wheel/scipion_em_gautomatch-3.0.11.dist-info/WHEEL
2020-09-22T11:21:57,049   Building wheel for scipion-em-gautomatch (setup.py): finished with status 'done'
2020-09-22T11:21:57,053   Created wheel for scipion-em-gautomatch: filename=scipion_em_gautomatch-3.0.11-py3-none-any.whl size=29466 sha256=01c195cb1db648895965f6b7d773ded962a8c0f37f4927c2fa685f1a5fcf4175
2020-09-22T11:21:57,054   Stored in directory: /tmp/pip-ephem-wheel-cache-xp_fnfv0/wheels/78/37/74/1cee710382cefc5acc1ec478c2868cf974f3a0004b2726316b
2020-09-22T11:21:57,058 Successfully built scipion-em-gautomatch
2020-09-22T11:21:57,070 Removed build tracker: '/tmp/pip-req-tracker-mqnjwa6p'