2020-09-22T13:56:36,177 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-09-22T13:56:36,942 Created temporary directory: /tmp/pip-ephem-wheel-cache-s_l30lyl
2020-09-22T13:56:36,947 Created temporary directory: /tmp/pip-req-tracker-s7gr2bm6
2020-09-22T13:56:36,948 Initialized build tracking at /tmp/pip-req-tracker-s7gr2bm6
2020-09-22T13:56:36,948 Created build tracker: /tmp/pip-req-tracker-s7gr2bm6
2020-09-22T13:56:36,949 Entered build tracker: /tmp/pip-req-tracker-s7gr2bm6
2020-09-22T13:56:36,950 Created temporary directory: /tmp/pip-wheel-v2xgn1s0
2020-09-22T13:56:36,971 1 location(s) to search for versions of pele-platform:
2020-09-22T13:56:36,971 * https://pypi.org/simple/pele-platform/
2020-09-22T13:56:36,971 Fetching project page and analyzing links: https://pypi.org/simple/pele-platform/
2020-09-22T13:56:36,974 Getting page https://pypi.org/simple/pele-platform/
2020-09-22T13:56:36,978 Found index url https://pypi.org/simple
2020-09-22T13:56:37,327   Found link https://files.pythonhosted.org/packages/f0/ac/9497572d7da4e501c8dddc3be3fa338744dbc27b67eb09275b8375fae2fd/pele_platform-1.0.0.1.tar.gz#sha256=e3c8bde654fe3d249714c4ddb1d3471944752f6840a6bcf4b399a3466931b838 (from https://pypi.org/simple/pele-platform/), version: 1.0.0.1
2020-09-22T13:56:37,329   Found link https://files.pythonhosted.org/packages/79/a0/d1b4b9269c3fe9dd2edc878a2dec9d3f4e7701cc932272169f44a025c2a9/pele_platform-1.0.0.2.tar.gz#sha256=919f487c943e6e71a8d82e56dac3051605ffdc6a680d168b5233cea95c9e4701 (from https://pypi.org/simple/pele-platform/), version: 1.0.0.2
2020-09-22T13:56:37,329   Found link https://files.pythonhosted.org/packages/a3/56/3cc9eb3b0ecf0943c4f4eb5b0729cd54906290f84dc4cfb230ad69ce99c6/pele_platform-1.0.0.3.tar.gz#sha256=ea4f3df0aeb65812e72eb9b24605146a7afeeb7f89ce7f769058c2e894654239 (from https://pypi.org/simple/pele-platform/), version: 1.0.0.3
2020-09-22T13:56:37,330   Found link https://files.pythonhosted.org/packages/d0/6d/1ac79163749b10c7f694dde1db24063d4e2f57bcf365db1b8cfa1b9f7f57/pele_platform-1.1.0.tar.gz#sha256=25a644fc27c0c364bfece9addd278a74a5a7ea5f4ab40b31fa8cd961e7485a65 (from https://pypi.org/simple/pele-platform/), version: 1.1.0
2020-09-22T13:56:37,331   Found link https://files.pythonhosted.org/packages/fd/15/306ea35b1d4be507caf1613d05fc16c076f070c2a16e6283a331695fcb5e/pele_platform-1.2.0.tar.gz#sha256=2967a976bafc47884ca49864ca87d40d87aa50c2fc57900c1f0517e84e789153 (from https://pypi.org/simple/pele-platform/), version: 1.2.0
2020-09-22T13:56:37,333   Found link https://files.pythonhosted.org/packages/74/98/cf2442f668f8ad6be1838c3ce7b87a409eee7448a1d7d033862ad0bda36c/pele_platform-1.2.1.tar.gz#sha256=5d30d563960934362ac79eb7a24b8f4b831076dba29bbb498901a0b0a1dca367 (from https://pypi.org/simple/pele-platform/), version: 1.2.1
2020-09-22T13:56:37,333   Found link https://files.pythonhosted.org/packages/1a/78/29b2eb73308b595668a9c22abd93ac88f82c49ebc6b004f332a774166391/pele_platform-1.2.2.tar.gz#sha256=00f579740db5455cea04c82e86b87c8f53045496ba61d9f4e96436f1d0cdfb08 (from https://pypi.org/simple/pele-platform/), version: 1.2.2
2020-09-22T13:56:37,334   Found link https://files.pythonhosted.org/packages/fb/6b/85f262d33a080377ea5202d5779c9402c23aaefc4e1b04bb94d9432aad42/pele_platform-1.2.3.tar.gz#sha256=18713b6811d7689accb54dde5429aa5225dcb8e520164fd7b4037453c63f74d9 (from https://pypi.org/simple/pele-platform/), version: 1.2.3
2020-09-22T13:56:37,335   Found link https://files.pythonhosted.org/packages/d5/15/707e6b89f0ee479d173ef2fe6a41af1ff9d91dd86e45067da5cee56761d9/pele_platform-1.3.0.tar.gz#sha256=fb7fb5dd59f9e3a76d371be6aa0b013209752c464862bf944de6b2a2903424a9 (from https://pypi.org/simple/pele-platform/), version: 1.3.0
2020-09-22T13:56:37,336   Found link https://files.pythonhosted.org/packages/7c/b0/4fda3001d5f13010bc2005e335f799f24d2204fc700a847e28091b57fabb/pele_platform-1.3.1.tar.gz#sha256=c6c0ac764ae30ce8a0650cdf0fc686fd733cb6b11fc15e6cccd5659166be3b33 (from https://pypi.org/simple/pele-platform/), version: 1.3.1
2020-09-22T13:56:37,337   Found link https://files.pythonhosted.org/packages/34/21/2f68d91d200432e0feb4662f6ba5538817335d86df60688e3a6f050dd21b/pele_platform-1.3.2.tar.gz#sha256=14c6e236347a1101f5de04bc25a32f302904bdb46326fb151c14e930a28d7a48 (from https://pypi.org/simple/pele-platform/), version: 1.3.2
2020-09-22T13:56:37,338   Found link https://files.pythonhosted.org/packages/63/a6/ad0bc781b4089093fd8aca4d75d237e0c0ae9d1f6b7e4b86a733f5a91b10/pele_platform-1.3.3.tar.gz#sha256=9e9e49d359bde42485b1c2d23b8a80c3de43064a672c260d18b9f10b55ee666e (from https://pypi.org/simple/pele-platform/), version: 1.3.3
2020-09-22T13:56:37,339   Found link https://files.pythonhosted.org/packages/e7/6a/4d8e75e0dbff74b22c76f4640a72798acfe6f55e35dcf0e9080dc8f36857/pele_platform-1.3.4.tar.gz#sha256=b8f7a2caac267df0381e8a3d73ddfeaec60cccc22336aa76178dbf3d2b2e880b (from https://pypi.org/simple/pele-platform/), version: 1.3.4
2020-09-22T13:56:37,340   Found link https://files.pythonhosted.org/packages/d2/7d/8f6c7c977288ed554723c003a885c118889c3bf76ac343961a84d330f85e/pele_platform-1.4.0.tar.gz#sha256=0190af77e0e24482742b634d120ac9b52135716bbbc93929bf688313f63e4a59 (from https://pypi.org/simple/pele-platform/), version: 1.4.0
2020-09-22T13:56:37,341   Found link https://files.pythonhosted.org/packages/ed/11/ff7cdcb7a17869082a94fc4c066a8bc6407a07f7c542c1dbc4919b1e091a/pele_platform-1.4.1.tar.gz#sha256=2f5327616aeff5be40d54b2771fd43b8cdb75086944c11800339bd44e0866c01 (from https://pypi.org/simple/pele-platform/), version: 1.4.1
2020-09-22T13:56:37,342   Found link https://files.pythonhosted.org/packages/4b/4f/fec23d74e8b1474fe25234fd34972a427234307dc9f7908f916e50036d81/pele_platform-1.4.2.tar.gz#sha256=c1092fb5c5cdb38736f621c434ff3112ea1cd1abc94d0bfe03ea7044b6e06612 (from https://pypi.org/simple/pele-platform/), version: 1.4.2
2020-09-22T13:56:37,343   Found link https://files.pythonhosted.org/packages/7a/b3/8eeb8c773a4fbf6561a929b8bab563f31384a0512a4708b4d0249ebc8c24/pele_platform-1.4.3.tar.gz#sha256=e491ac06c05301a846084e07ab709abf4b0507768710256443b6523b25339c40 (from https://pypi.org/simple/pele-platform/), version: 1.4.3
2020-09-22T13:56:37,343   Found link https://files.pythonhosted.org/packages/92/57/ff446766add00995f3fa0446f9c32ad52b759bab05d3f41e5ee51a8e76a8/pele_platform-1.4.4.tar.gz#sha256=eca94d45d76664106cff9915781740932635878b203b430d62f7aeb252ce59c7 (from https://pypi.org/simple/pele-platform/), version: 1.4.4
2020-09-22T13:56:37,344   Found link https://files.pythonhosted.org/packages/6d/f3/5ad1c5dab958edc8ecfb75883f8ac760308e570f3a0929104ba01a223f02/pele_platform-1.5.0.tar.gz#sha256=0b7eed2abd70f20caadcf9e9c8642cfc51d55d66ab114e42f0d425bfb6603323 (from https://pypi.org/simple/pele-platform/), version: 1.5.0
2020-09-22T13:56:37,345   Found link https://files.pythonhosted.org/packages/1c/b0/44dcc5184b218a7481babe8cd5738129741e29422e226308a583a3dd5629/pele_platform-1.5.1.tar.gz#sha256=9e138403c8fb65450d9841db279140f046a8325791af9983e202c9002bf44b93 (from https://pypi.org/simple/pele-platform/), version: 1.5.1
2020-09-22T13:56:37,363 Given no hashes to check 1 links for project 'pele-platform': discarding no candidates
2020-09-22T13:56:37,365 Using version 1.5.1 (newest of versions: 1.5.1)
2020-09-22T13:56:37,374 Collecting pele-platform==1.5.1
2020-09-22T13:56:37,379   Created temporary directory: /tmp/pip-unpack-sxsdbc_k
2020-09-22T13:56:37,761   Downloading pele_platform-1.5.1.tar.gz (4.9 MB)
2020-09-22T13:56:43,960   Added pele-platform==1.5.1 from https://files.pythonhosted.org/packages/1c/b0/44dcc5184b218a7481babe8cd5738129741e29422e226308a583a3dd5629/pele_platform-1.5.1.tar.gz#sha256=9e138403c8fb65450d9841db279140f046a8325791af9983e202c9002bf44b93 to build tracker '/tmp/pip-req-tracker-s7gr2bm6'
2020-09-22T13:56:43,964     Running setup.py (path:/tmp/pip-wheel-v2xgn1s0/pele-platform/setup.py) egg_info for package pele-platform
2020-09-22T13:56:43,966     Created temporary directory: /tmp/pip-pip-egg-info-0dqkw4sg
2020-09-22T13:56:43,968     Running command python setup.py egg_info
2020-09-22T13:56:46,692     running egg_info
2020-09-22T13:56:46,698     creating /tmp/pip-pip-egg-info-0dqkw4sg/pele_platform.egg-info
2020-09-22T13:56:46,700     writing top-level names to /tmp/pip-pip-egg-info-0dqkw4sg/pele_platform.egg-info/top_level.txt
2020-09-22T13:56:46,703     writing dependency_links to /tmp/pip-pip-egg-info-0dqkw4sg/pele_platform.egg-info/dependency_links.txt
2020-09-22T13:56:46,706     writing requirements to /tmp/pip-pip-egg-info-0dqkw4sg/pele_platform.egg-info/requires.txt
2020-09-22T13:56:46,708     writing /tmp/pip-pip-egg-info-0dqkw4sg/pele_platform.egg-info/PKG-INFO
2020-09-22T13:56:46,716     writing manifest file '/tmp/pip-pip-egg-info-0dqkw4sg/pele_platform.egg-info/SOURCES.txt'
2020-09-22T13:56:46,799     reading manifest file '/tmp/pip-pip-egg-info-0dqkw4sg/pele_platform.egg-info/SOURCES.txt'
2020-09-22T13:56:46,802     reading manifest template 'MANIFEST.in'
2020-09-22T13:56:46,806     /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing 'v1.5.1' to '1.5.1'
2020-09-22T13:56:46,807       warnings.warn(tmpl.format(**locals()))
2020-09-22T13:56:46,808     warning: no files found matching 'pele_platform/Utilities/PlopRotTemp/param/*'
2020-09-22T13:56:46,809     warning: no files found matching 'pele_platform/AdaptivePELE/atomset/*'
2020-09-22T13:56:46,809     warning: no files found matching 'pele_platform/AdaptivePELE/freeEnergies/*'
2020-09-22T13:56:46,810     warning: no files found matching '*' under directory 'pele_platform/Utilities/PPP/Data/'
2020-09-22T13:56:47,150     warning: no files found matching '*' under directory 'tests/data'
2020-09-22T13:56:47,183     writing manifest file '/tmp/pip-pip-egg-info-0dqkw4sg/pele_platform.egg-info/SOURCES.txt'
2020-09-22T13:56:47,321   Source in /tmp/pip-wheel-v2xgn1s0/pele-platform has version 1.5.1, which satisfies requirement pele-platform==1.5.1 from https://files.pythonhosted.org/packages/1c/b0/44dcc5184b218a7481babe8cd5738129741e29422e226308a583a3dd5629/pele_platform-1.5.1.tar.gz#sha256=9e138403c8fb65450d9841db279140f046a8325791af9983e202c9002bf44b93
2020-09-22T13:56:47,323   Removed pele-platform==1.5.1 from https://files.pythonhosted.org/packages/1c/b0/44dcc5184b218a7481babe8cd5738129741e29422e226308a583a3dd5629/pele_platform-1.5.1.tar.gz#sha256=9e138403c8fb65450d9841db279140f046a8325791af9983e202c9002bf44b93 from build tracker '/tmp/pip-req-tracker-s7gr2bm6'
2020-09-22T13:56:47,327 Building wheels for collected packages: pele-platform
2020-09-22T13:56:47,336   Created temporary directory: /tmp/pip-wheel-vil5n6zs
2020-09-22T13:56:47,337   Building wheel for pele-platform (setup.py): started
2020-09-22T13:56:47,338   Destination directory: /tmp/pip-wheel-vil5n6zs
2020-09-22T13:56:47,339   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-v2xgn1s0/pele-platform/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-v2xgn1s0/pele-platform/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-vil5n6zs
2020-09-22T13:56:49,977   /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing 'v1.5.1' to '1.5.1'
2020-09-22T13:56:49,978     warnings.warn(tmpl.format(**locals()))
2020-09-22T13:56:50,139   running bdist_wheel
2020-09-22T13:56:50,150   running build
2020-09-22T13:56:50,151   running build_py
2020-09-22T13:56:50,163   creating build
2020-09-22T13:56:50,164   creating build/lib
2020-09-22T13:56:50,166   creating build/lib/pele_platform
2020-09-22T13:56:50,168   copying pele_platform/_version.py -> build/lib/pele_platform
2020-09-22T13:56:50,172   copying pele_platform/__init__.py -> build/lib/pele_platform
2020-09-22T13:56:50,176   copying pele_platform/main.py -> build/lib/pele_platform
2020-09-22T13:56:50,181   creating build/lib/pele_platform/constants
2020-09-22T13:56:50,184   copying pele_platform/constants/pele_params.py -> build/lib/pele_platform/constants
2020-09-22T13:56:50,189   copying pele_platform/constants/__init__.py -> build/lib/pele_platform/constants
2020-09-22T13:56:50,193   copying pele_platform/constants/constants.py -> build/lib/pele_platform/constants
2020-09-22T13:56:50,199   creating build/lib/pele_platform/gpcr
2020-09-22T13:56:50,201   copying pele_platform/gpcr/__init__.py -> build/lib/pele_platform/gpcr
2020-09-22T13:56:50,207   copying pele_platform/gpcr/main.py -> build/lib/pele_platform/gpcr
2020-09-22T13:56:50,214   creating build/lib/pele_platform/Utilities
2020-09-22T13:56:50,217   copying pele_platform/Utilities/__init__.py -> build/lib/pele_platform/Utilities
2020-09-22T13:56:50,224   creating build/lib/pele_platform/RNA
2020-09-22T13:56:50,226   copying pele_platform/RNA/prep.py -> build/lib/pele_platform/RNA
2020-09-22T13:56:50,231   copying pele_platform/RNA/__init__.py -> build/lib/pele_platform/RNA
2020-09-22T13:56:50,236   creating build/lib/pele_platform/Analysis
2020-09-22T13:56:50,238   copying pele_platform/Analysis/pdf_report.py -> build/lib/pele_platform/Analysis
2020-09-22T13:56:50,242   copying pele_platform/Analysis/to_mae.py -> build/lib/pele_platform/Analysis
2020-09-22T13:56:50,246   copying pele_platform/Analysis/__init__.py -> build/lib/pele_platform/Analysis
2020-09-22T13:56:50,249   copying pele_platform/Analysis/plots.py -> build/lib/pele_platform/Analysis
2020-09-22T13:56:50,257   creating build/lib/pele_platform/Adaptive
2020-09-22T13:56:50,259   copying pele_platform/Adaptive/ligand_parametrization.py -> build/lib/pele_platform/Adaptive
2020-09-22T13:56:50,264   copying pele_platform/Adaptive/box.py -> build/lib/pele_platform/Adaptive
2020-09-22T13:56:50,269   copying pele_platform/Adaptive/pca.py -> build/lib/pele_platform/Adaptive
2020-09-22T13:56:50,275   copying pele_platform/Adaptive/simulation.py -> build/lib/pele_platform/Adaptive
2020-09-22T13:56:50,282   copying pele_platform/Adaptive/solvent.py -> build/lib/pele_platform/Adaptive
2020-09-22T13:56:50,287   copying pele_platform/Adaptive/metrics.py -> build/lib/pele_platform/Adaptive
2020-09-22T13:56:50,291   copying pele_platform/Adaptive/__init__.py -> build/lib/pele_platform/Adaptive
2020-09-22T13:56:50,296   creating build/lib/pele_platform/PPI
2020-09-22T13:56:50,298   copying pele_platform/PPI/simulation_launcher.py -> build/lib/pele_platform/PPI
2020-09-22T13:56:50,303   copying pele_platform/PPI/preparation.py -> build/lib/pele_platform/PPI
2020-09-22T13:56:50,307   copying pele_platform/PPI/__init__.py -> build/lib/pele_platform/PPI
2020-09-22T13:56:50,311   copying pele_platform/PPI/main.py -> build/lib/pele_platform/PPI
2020-09-22T13:56:50,316   creating build/lib/pele_platform/Allosteric
2020-09-22T13:56:50,318   copying pele_platform/Allosteric/cluster.py -> build/lib/pele_platform/Allosteric
2020-09-22T13:56:50,323   copying pele_platform/Allosteric/__init__.py -> build/lib/pele_platform/Allosteric
2020-09-22T13:56:50,326   copying pele_platform/Allosteric/main.py -> build/lib/pele_platform/Allosteric
2020-09-22T13:56:50,331   creating build/lib/pele_platform/Errors
2020-09-22T13:56:50,333   copying pele_platform/Errors/custom_errors.py -> build/lib/pele_platform/Errors
2020-09-22T13:56:50,338   copying pele_platform/Errors/__init__.py -> build/lib/pele_platform/Errors
2020-09-22T13:56:50,343   creating build/lib/pele_platform/Frag
2020-09-22T13:56:50,345   copying pele_platform/Frag/fragments.py -> build/lib/pele_platform/Frag
2020-09-22T13:56:50,350   copying pele_platform/Frag/simulation.py -> build/lib/pele_platform/Frag
2020-09-22T13:56:50,356   copying pele_platform/Frag/generative_model.py -> build/lib/pele_platform/Frag
2020-09-22T13:56:50,360   copying pele_platform/Frag/checker.py -> build/lib/pele_platform/Frag
2020-09-22T13:56:50,365   copying pele_platform/Frag/atoms.py -> build/lib/pele_platform/Frag
2020-09-22T13:56:50,370   copying pele_platform/Frag/helpers.py -> build/lib/pele_platform/Frag
2020-09-22T13:56:50,377   copying pele_platform/Frag/__init__.py -> build/lib/pele_platform/Frag
2020-09-22T13:56:50,384   creating build/lib/pele_platform/out_in
2020-09-22T13:56:50,386   copying pele_platform/out_in/__init__.py -> build/lib/pele_platform/out_in
2020-09-22T13:56:50,391   copying pele_platform/out_in/main.py -> build/lib/pele_platform/out_in
2020-09-22T13:56:50,396   creating build/lib/pele_platform/features
2020-09-22T13:56:50,399   copying pele_platform/features/frag.py -> build/lib/pele_platform/features
2020-09-22T13:56:50,403   copying pele_platform/features/__init__.py -> build/lib/pele_platform/features
2020-09-22T13:56:50,407   copying pele_platform/features/adaptive.py -> build/lib/pele_platform/features
2020-09-22T13:56:50,417   creating build/lib/pele_platform/Checker
2020-09-22T13:56:50,419   copying pele_platform/Checker/valid_flags.py -> build/lib/pele_platform/Checker
2020-09-22T13:56:50,427   copying pele_platform/Checker/executable.py -> build/lib/pele_platform/Checker
2020-09-22T13:56:50,432   copying pele_platform/Checker/python_version.py -> build/lib/pele_platform/Checker
2020-09-22T13:56:50,436   copying pele_platform/Checker/__init__.py -> build/lib/pele_platform/Checker
2020-09-22T13:56:50,439   copying pele_platform/Checker/main.py -> build/lib/pele_platform/Checker
2020-09-22T13:56:50,444   copying pele_platform/Checker/environment_variables.py -> build/lib/pele_platform/Checker
2020-09-22T13:56:50,450   creating build/lib/pele_platform/Utilities/Parameters
2020-09-22T13:56:50,453   copying pele_platform/Utilities/Parameters/pele_env.py -> build/lib/pele_platform/Utilities/Parameters
2020-09-22T13:56:50,459   copying pele_platform/Utilities/Parameters/__init__.py -> build/lib/pele_platform/Utilities/Parameters
2020-09-22T13:56:50,470   creating build/lib/pele_platform/Utilities/Helpers
2020-09-22T13:56:50,472   copying pele_platform/Utilities/Helpers/constraints.py -> build/lib/pele_platform/Utilities/Helpers
2020-09-22T13:56:50,478   copying pele_platform/Utilities/Helpers/conda_deployment.py -> build/lib/pele_platform/Utilities/Helpers
2020-09-22T13:56:50,483   copying pele_platform/Utilities/Helpers/launcher.py -> build/lib/pele_platform/Utilities/Helpers
2020-09-22T13:56:50,488   copying pele_platform/Utilities/Helpers/calculatePCA4PELE.py -> build/lib/pele_platform/Utilities/Helpers
2020-09-22T13:56:50,496   copying pele_platform/Utilities/Helpers/simulation.py -> build/lib/pele_platform/Utilities/Helpers
2020-09-22T13:56:50,504   copying pele_platform/Utilities/Helpers/bestStructs.py -> build/lib/pele_platform/Utilities/Helpers
2020-09-22T13:56:50,511   copying pele_platform/Utilities/Helpers/water.py -> build/lib/pele_platform/Utilities/Helpers
2020-09-22T13:56:50,517   copying pele_platform/Utilities/Helpers/template_builder.py -> build/lib/pele_platform/Utilities/Helpers
2020-09-22T13:56:50,522   copying pele_platform/Utilities/Helpers/center_of_mass.py -> build/lib/pele_platform/Utilities/Helpers
2020-09-22T13:56:50,527   copying pele_platform/Utilities/Helpers/helpers.py -> build/lib/pele_platform/Utilities/Helpers
2020-09-22T13:56:50,534   copying pele_platform/Utilities/Helpers/solventOBCParamsGenerator.py -> build/lib/pele_platform/Utilities/Helpers
2020-09-22T13:56:50,541   copying pele_platform/Utilities/Helpers/plop_launcher.py -> build/lib/pele_platform/Utilities/Helpers
2020-09-22T13:56:50,548   copying pele_platform/Utilities/Helpers/protein_wizard.py -> build/lib/pele_platform/Utilities/Helpers
2020-09-22T13:56:50,553   copying pele_platform/Utilities/Helpers/__init__.py -> build/lib/pele_platform/Utilities/Helpers
2020-09-22T13:56:50,557   copying pele_platform/Utilities/Helpers/system_prep.py -> build/lib/pele_platform/Utilities/Helpers
2020-09-22T13:56:50,562   copying pele_platform/Utilities/Helpers/randomize.py -> build/lib/pele_platform/Utilities/Helpers
2020-09-22T13:56:50,568   copying pele_platform/Utilities/Helpers/yaml_parser.py -> build/lib/pele_platform/Utilities/Helpers
2020-09-22T13:56:50,575   copying pele_platform/Utilities/Helpers/missing_residues.py -> build/lib/pele_platform/Utilities/Helpers
2020-09-22T13:56:50,583   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams
2020-09-22T13:56:50,586   copying pele_platform/Utilities/Parameters/SimulationParams/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams
2020-09-22T13:56:50,591   copying pele_platform/Utilities/Parameters/SimulationParams/simulation_params.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams
2020-09-22T13:56:50,599   creating build/lib/pele_platform/Utilities/Parameters/SimulationFolders
2020-09-22T13:56:50,601   copying pele_platform/Utilities/Parameters/SimulationFolders/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationFolders
2020-09-22T13:56:50,605   copying pele_platform/Utilities/Parameters/SimulationFolders/simulation_folders.py -> build/lib/pele_platform/Utilities/Parameters/SimulationFolders
2020-09-22T13:56:50,611   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
2020-09-22T13:56:50,614   copying pele_platform/Utilities/Parameters/SimulationParams/MSMParams/msm_params.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
2020-09-22T13:56:50,621   copying pele_platform/Utilities/Parameters/SimulationParams/MSMParams/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
2020-09-22T13:56:50,628   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
2020-09-22T13:56:50,631   copying pele_platform/Utilities/Parameters/SimulationParams/BiasParams/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
2020-09-22T13:56:50,636   copying pele_platform/Utilities/Parameters/SimulationParams/BiasParams/bias_params.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
2020-09-22T13:56:50,641   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
2020-09-22T13:56:50,643   copying pele_platform/Utilities/Parameters/SimulationParams/InOutParams/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
2020-09-22T13:56:50,648   copying pele_platform/Utilities/Parameters/SimulationParams/InOutParams/inout_params.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
2020-09-22T13:56:50,653   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/PCA
2020-09-22T13:56:50,656   copying pele_platform/Utilities/Parameters/SimulationParams/PCA/pca.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/PCA
2020-09-22T13:56:50,660   copying pele_platform/Utilities/Parameters/SimulationParams/PCA/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/PCA
2020-09-22T13:56:50,665   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
2020-09-22T13:56:50,668   copying pele_platform/Utilities/Parameters/SimulationParams/GlideParams/glide_params.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
2020-09-22T13:56:50,672   copying pele_platform/Utilities/Parameters/SimulationParams/GlideParams/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
2020-09-22T13:56:50,677   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/PPI
2020-09-22T13:56:50,679   copying pele_platform/Utilities/Parameters/SimulationParams/PPI/ppi.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/PPI
2020-09-22T13:56:50,684   copying pele_platform/Utilities/Parameters/SimulationParams/PPI/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/PPI
2020-09-22T13:56:50,689   creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/Allosteric
2020-09-22T13:56:50,691   copying pele_platform/Utilities/Parameters/SimulationParams/Allosteric/allosteric.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/Allosteric
2020-09-22T13:56:50,696   copying pele_platform/Utilities/Parameters/SimulationParams/Allosteric/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/Allosteric
2020-09-22T13:56:50,700   creating build/lib/pele_platform/Utilities/Helpers/Metals
2020-09-22T13:56:50,703   copying pele_platform/Utilities/Helpers/Metals/metal_polarisation.py -> build/lib/pele_platform/Utilities/Helpers/Metals
2020-09-22T13:56:50,708   copying pele_platform/Utilities/Helpers/Metals/metal_constraints.py -> build/lib/pele_platform/Utilities/Helpers/Metals
2020-09-22T13:56:50,713   copying pele_platform/Utilities/Helpers/Metals/__init__.py -> build/lib/pele_platform/Utilities/Helpers/Metals
2020-09-22T13:56:50,721   creating build/lib/pele_platform/Frag/parameters
2020-09-22T13:56:50,724   copying pele_platform/Frag/parameters/simulation.py -> build/lib/pele_platform/Frag/parameters
2020-09-22T13:56:50,731   copying pele_platform/Frag/parameters/opcionals.py -> build/lib/pele_platform/Frag/parameters
2020-09-22T13:56:50,737   copying pele_platform/Frag/parameters/water.py -> build/lib/pele_platform/Frag/parameters
2020-09-22T13:56:50,741   copying pele_platform/Frag/parameters/metrics.py -> build/lib/pele_platform/Frag/parameters
2020-09-22T13:56:50,745   copying pele_platform/Frag/parameters/__init__.py -> build/lib/pele_platform/Frag/parameters
2020-09-22T13:56:50,749   copying pele_platform/Frag/parameters/main.py -> build/lib/pele_platform/Frag/parameters
2020-09-22T13:56:50,754   copying pele_platform/Frag/parameters/files.py -> build/lib/pele_platform/Frag/parameters
2020-09-22T13:56:50,760   running egg_info
2020-09-22T13:56:50,789   writing requirements to pele_platform.egg-info/requires.txt
2020-09-22T13:56:50,792   writing dependency_links to pele_platform.egg-info/dependency_links.txt
2020-09-22T13:56:50,795   writing pele_platform.egg-info/PKG-INFO
2020-09-22T13:56:50,799   writing top-level names to pele_platform.egg-info/top_level.txt
2020-09-22T13:56:50,842   reading manifest file 'pele_platform.egg-info/SOURCES.txt'
2020-09-22T13:56:50,861   reading manifest template 'MANIFEST.in'
2020-09-22T13:56:50,864   warning: no files found matching 'pele_platform/Utilities/PlopRotTemp/param/*'
2020-09-22T13:56:50,865   warning: no files found matching 'pele_platform/AdaptivePELE/atomset/*'
2020-09-22T13:56:50,865   warning: no files found matching 'pele_platform/AdaptivePELE/freeEnergies/*'
2020-09-22T13:56:50,866   warning: no files found matching '*' under directory 'pele_platform/Utilities/PPP/Data/'
2020-09-22T13:56:51,171   warning: no files found matching '*' under directory 'tests/data'
2020-09-22T13:56:51,219   writing manifest file 'pele_platform.egg-info/SOURCES.txt'
2020-09-22T13:56:51,285   creating build/lib/pele_platform/Examples
2020-09-22T13:56:51,287   copying pele_platform/Examples/test.sl -> build/lib/pele_platform/Examples
2020-09-22T13:56:51,293   creating build/lib/pele_platform/Examples/Adaptive
2020-09-22T13:56:51,294   copying pele_platform/Examples/Adaptive/STR.rot.assign -> build/lib/pele_platform/Examples/Adaptive
2020-09-22T13:56:51,300   copying pele_platform/Examples/Adaptive/adaptive.conf -> build/lib/pele_platform/Examples/Adaptive
2020-09-22T13:56:51,305   copying pele_platform/Examples/Adaptive/pele_file_4Adaptive.conf -> build/lib/pele_platform/Examples/Adaptive
2020-09-22T13:56:51,310   copying pele_platform/Examples/Adaptive/strz -> build/lib/pele_platform/Examples/Adaptive
2020-09-22T13:56:51,320   copying pele_platform/Examples/Adaptive/test.sl -> build/lib/pele_platform/Examples/Adaptive
2020-09-22T13:56:51,326   creating build/lib/pele_platform/Examples/Allosteric
2020-09-22T13:56:51,329   copying pele_platform/Examples/Allosteric/complex.pdb -> build/lib/pele_platform/Examples/Allosteric
2020-09-22T13:56:51,378   copying pele_platform/Examples/Allosteric/input_folder.yaml -> build/lib/pele_platform/Examples/Allosteric
2020-09-22T13:56:51,385   copying pele_platform/Examples/Allosteric/input_global.yaml -> build/lib/pele_platform/Examples/Allosteric
2020-09-22T13:56:51,390   copying pele_platform/Examples/Allosteric/input_global_xtc.yaml -> build/lib/pele_platform/Examples/Allosteric
2020-09-22T13:56:51,395   copying pele_platform/Examples/Allosteric/input_restart.yaml -> build/lib/pele_platform/Examples/Allosteric
2020-09-22T13:56:51,400   copying pele_platform/Examples/Allosteric/input_skipref.yaml -> build/lib/pele_platform/Examples/Allosteric
2020-09-22T13:56:51,407   creating build/lib/pele_platform/Examples/Msm
2020-09-22T13:56:51,411   copying pele_platform/Examples/Msm/AS4_INIT.mae -> build/lib/pele_platform/Examples/Msm
2020-09-22T13:56:51,422   copying pele_platform/Examples/Msm/PR_1A28_protein.pdb -> build/lib/pele_platform/Examples/Msm
2020-09-22T13:56:51,460   copying pele_platform/Examples/Msm/PR_1A28_xray_-_minimized.pdb -> build/lib/pele_platform/Examples/Msm
2020-09-22T13:56:51,498   copying pele_platform/Examples/Msm/PR_1A28_xray_-_minimized_processed.pdb -> build/lib/pele_platform/Examples/Msm
2020-09-22T13:56:51,535   copying pele_platform/Examples/Msm/PR_AS4.pdb -> build/lib/pele_platform/Examples/Msm
2020-09-22T13:56:51,572   copying pele_platform/Examples/Msm/input.yaml -> build/lib/pele_platform/Examples/Msm
2020-09-22T13:56:51,578   creating build/lib/pele_platform/Examples/PPI
2020-09-22T13:56:51,581   copying pele_platform/Examples/PPI/1f47_ligand.pdb -> build/lib/pele_platform/Examples/PPI
2020-09-22T13:56:51,589   copying pele_platform/Examples/PPI/1f47_prep.pdb -> build/lib/pele_platform/Examples/PPI
2020-09-22T13:56:51,616   copying pele_platform/Examples/PPI/1tnf_ligand.pdb -> build/lib/pele_platform/Examples/PPI
2020-09-22T13:56:51,624   copying pele_platform/Examples/PPI/1tnf_prep.pdb -> build/lib/pele_platform/Examples/PPI
2020-09-22T13:56:51,687   copying pele_platform/Examples/PPI/input.yaml -> build/lib/pele_platform/Examples/PPI
2020-09-22T13:56:51,691   copying pele_platform/Examples/PPI/input_folder.yaml -> build/lib/pele_platform/Examples/PPI
2020-09-22T13:56:51,696   copying pele_platform/Examples/PPI/input_skipref.yaml -> build/lib/pele_platform/Examples/PPI
2020-09-22T13:56:51,701   creating build/lib/pele_platform/Examples/RNA
2020-09-22T13:56:51,703   copying pele_platform/Examples/RNA/2l94.yaml -> build/lib/pele_platform/Examples/RNA
2020-09-22T13:56:51,709   copying pele_platform/Examples/RNA/5C45_prep.pdb -> build/lib/pele_platform/Examples/RNA
2020-09-22T13:56:51,754   copying pele_platform/Examples/RNA/5C45_prep_proc.pdb -> build/lib/pele_platform/Examples/RNA
2020-09-22T13:56:51,797   copying pele_platform/Examples/RNA/input.yaml -> build/lib/pele_platform/Examples/RNA
2020-09-22T13:56:51,804   copying pele_platform/Examples/RNA/input_induced.yaml -> build/lib/pele_platform/Examples/RNA
2020-09-22T13:56:51,810   creating build/lib/pele_platform/Examples/analysis
2020-09-22T13:56:51,813   copying pele_platform/Examples/analysis/input.yaml -> build/lib/pele_platform/Examples/analysis
2020-09-22T13:56:51,820   copying pele_platform/Examples/analysis/input_flags.yaml -> build/lib/pele_platform/Examples/analysis
2020-09-22T13:56:51,827   copying pele_platform/Examples/analysis/input_flags0.yaml -> build/lib/pele_platform/Examples/analysis
2020-09-22T13:56:51,832   copying pele_platform/Examples/analysis/input_mae.yaml -> build/lib/pele_platform/Examples/analysis
2020-09-22T13:56:51,837   creating build/lib/pele_platform/Examples/analysis/data
2020-09-22T13:56:51,839   copying pele_platform/Examples/analysis/data/MG.rot.assign -> build/lib/pele_platform/Examples/analysis/data
2020-09-22T13:56:51,844   copying pele_platform/Examples/analysis/data/STR.rot.assign -> build/lib/pele_platform/Examples/analysis/data
2020-09-22T13:56:51,848   copying pele_platform/Examples/analysis/data/adaptive.conf -> build/lib/pele_platform/Examples/analysis/data
2020-09-22T13:56:51,855   copying pele_platform/Examples/analysis/data/input.yaml -> build/lib/pele_platform/Examples/analysis/data
2020-09-22T13:56:51,861   copying pele_platform/Examples/analysis/data/input_flags.yaml -> build/lib/pele_platform/Examples/analysis/data
2020-09-22T13:56:51,868   copying pele_platform/Examples/analysis/data/input_flags0.yaml -> build/lib/pele_platform/Examples/analysis/data
2020-09-22T13:56:51,874   copying pele_platform/Examples/analysis/data/input_mae.yaml -> build/lib/pele_platform/Examples/analysis/data
2020-09-22T13:56:51,878   copying pele_platform/Examples/analysis/data/mgz -> build/lib/pele_platform/Examples/analysis/data
2020-09-22T13:56:51,883   copying pele_platform/Examples/analysis/data/pele.conf -> build/lib/pele_platform/Examples/analysis/data
2020-09-22T13:56:51,888   copying pele_platform/Examples/analysis/data/strz -> build/lib/pele_platform/Examples/analysis/data
2020-09-22T13:56:51,893   creating build/lib/pele_platform/Examples/analysis/data/inputs
2020-09-22T13:56:51,896   copying pele_platform/Examples/analysis/data/inputs/input1.pdb -> build/lib/pele_platform/Examples/analysis/data/inputs
2020-09-22T13:56:51,963   copying pele_platform/Examples/analysis/data/inputs/input2.pdb -> build/lib/pele_platform/Examples/analysis/data/inputs
2020-09-22T13:56:52,003   copying pele_platform/Examples/analysis/data/inputs/input3.pdb -> build/lib/pele_platform/Examples/analysis/data/inputs
2020-09-22T13:56:52,040   creating build/lib/pele_platform/Examples/analysis/data/output
2020-09-22T13:56:52,042   copying pele_platform/Examples/analysis/data/output/originalControlFile.conf -> build/lib/pele_platform/Examples/analysis/data/output
2020-09-22T13:56:52,048   creating build/lib/pele_platform/Examples/analysis/data/output/0
2020-09-22T13:56:52,049   copying pele_platform/Examples/analysis/data/output/0/report_1 -> build/lib/pele_platform/Examples/analysis/data/output/0
2020-09-22T13:56:52,056   copying pele_platform/Examples/analysis/data/output/0/topologyMapping.txt -> build/lib/pele_platform/Examples/analysis/data/output/0
2020-09-22T13:56:52,064   copying pele_platform/Examples/analysis/data/output/0/trajectory_1.pdb -> build/lib/pele_platform/Examples/analysis/data/output/0
2020-09-22T13:56:52,109   creating build/lib/pele_platform/Examples/analysis/data/output/0/clustering
2020-09-22T13:56:52,114   copying pele_platform/Examples/analysis/data/output/0/clustering/object.pkl -> build/lib/pele_platform/Examples/analysis/data/output/0/clustering
2020-09-22T13:56:52,153   copying pele_platform/Examples/analysis/data/output/0/clustering/summary.txt -> build/lib/pele_platform/Examples/analysis/data/output/0/clustering
2020-09-22T13:56:52,159   creating build/lib/pele_platform/Examples/analysis/data/output/synchronization
2020-09-22T13:56:52,162   copying pele_platform/Examples/analysis/data/output/synchronization/syncFile.lock -> build/lib/pele_platform/Examples/analysis/data/output/synchronization
2020-09-22T13:56:52,169   creating build/lib/pele_platform/Examples/analysis/data/output/topologies
2020-09-22T13:56:52,172   copying pele_platform/Examples/analysis/data/output/topologies/topologies.pkl -> build/lib/pele_platform/Examples/analysis/data/output/topologies
2020-09-22T13:56:52,209   copying pele_platform/Examples/analysis/data/output/topologies/topology_0.pdb -> build/lib/pele_platform/Examples/analysis/data/output/topologies
2020-09-22T13:56:52,249   creating build/lib/pele_platform/Examples/analysis/data/results
2020-09-22T13:56:52,251   creating build/lib/pele_platform/Examples/analysis/data/results/BestStructs
2020-09-22T13:56:52,254   copying pele_platform/Examples/analysis/data/results/BestStructs/epoch0_trajectory_1.0_BindingEnergy1.26468.pdb -> build/lib/pele_platform/Examples/analysis/data/results/BestStructs
2020-09-22T13:56:52,270   copying pele_platform/Examples/analysis/data/results/BestStructs/epoch0_trajectory_2.0_BindingEnergy0.644256.pdb -> build/lib/pele_platform/Examples/analysis/data/results/BestStructs
2020-09-22T13:56:52,286   copying pele_platform/Examples/analysis/data/results/BestStructs/epoch0_trajectory_2.1_BindingEnergy1.84474.pdb -> build/lib/pele_platform/Examples/analysis/data/results/BestStructs
2020-09-22T13:56:52,302   creating build/lib/pele_platform/Examples/analysis/data/results/Plots
2020-09-22T13:56:52,304   copying pele_platform/Examples/analysis/data/results/Plots/Binding_Energy.1_Binding_Energy_plot.png -> build/lib/pele_platform/Examples/analysis/data/results/Plots
2020-09-22T13:56:52,312   copying pele_platform/Examples/analysis/data/results/Plots/currentEnergy_Binding_Energy_Binding_Energy.1_plot.png -> build/lib/pele_platform/Examples/analysis/data/results/Plots
2020-09-22T13:56:52,319   copying pele_platform/Examples/analysis/data/results/Plots/currentEnergy_Binding_Energy_sasaLig_plot.png -> build/lib/pele_platform/Examples/analysis/data/results/Plots
2020-09-22T13:56:52,329   copying pele_platform/Examples/analysis/data/results/Plots/sasaLig_Binding_Energy_plot.png -> build/lib/pele_platform/Examples/analysis/data/results/Plots
2020-09-22T13:56:52,337   creating build/lib/pele_platform/Examples/analysis/data/results/clusters
2020-09-22T13:56:52,340   copying pele_platform/Examples/analysis/data/results/clusters/clusters_Binding Energy_boxplot.png -> build/lib/pele_platform/Examples/analysis/data/results/clusters
2020-09-22T13:56:52,346   creating build/lib/pele_platform/Examples/analysis/data/xtc
2020-09-22T13:56:52,348   copying pele_platform/Examples/analysis/data/xtc/summary.csv -> build/lib/pele_platform/Examples/analysis/data/xtc
2020-09-22T13:56:52,353   creating build/lib/pele_platform/Examples/analysis/data/xtc/0
2020-09-22T13:56:52,355   copying pele_platform/Examples/analysis/data/xtc/0/report_1 -> build/lib/pele_platform/Examples/analysis/data/xtc/0
2020-09-22T13:56:52,360   copying pele_platform/Examples/analysis/data/xtc/0/report_2 -> build/lib/pele_platform/Examples/analysis/data/xtc/0
2020-09-22T13:56:52,367   copying pele_platform/Examples/analysis/data/xtc/0/trajectory_1.xtc -> build/lib/pele_platform/Examples/analysis/data/xtc/0
2020-09-22T13:56:52,374   copying pele_platform/Examples/analysis/data/xtc/0/trajectory_2.xtc -> build/lib/pele_platform/Examples/analysis/data/xtc/0
2020-09-22T13:56:52,382   creating build/lib/pele_platform/Examples/analysis/data/xtc/topologies
2020-09-22T13:56:52,384   copying pele_platform/Examples/analysis/data/xtc/topologies/topology_0.pdb -> build/lib/pele_platform/Examples/analysis/data/xtc/topologies
2020-09-22T13:56:52,767   creating build/lib/pele_platform/Examples/bias
2020-09-22T13:56:52,770   copying pele_platform/Examples/bias/complex.pdb -> build/lib/pele_platform/Examples/bias
2020-09-22T13:56:52,810   copying pele_platform/Examples/bias/input_defaults.yaml -> build/lib/pele_platform/Examples/bias
2020-09-22T13:56:52,817   creating build/lib/pele_platform/Examples/box
2020-09-22T13:56:52,819   copying pele_platform/Examples/box/input.yaml -> build/lib/pele_platform/Examples/box
2020-09-22T13:56:52,826   creating build/lib/pele_platform/Examples/checker
2020-09-22T13:56:52,829   copying pele_platform/Examples/checker/complex.pdb -> build/lib/pele_platform/Examples/checker
2020-09-22T13:56:52,878   copying pele_platform/Examples/checker/input.yaml -> build/lib/pele_platform/Examples/checker
2020-09-22T13:56:52,887   copying pele_platform/Examples/checker/input_atom_string.yaml -> build/lib/pele_platform/Examples/checker
2020-09-22T13:56:52,895   copying pele_platform/Examples/checker/input_env.yaml -> build/lib/pele_platform/Examples/checker
2020-09-22T13:56:52,903   copying pele_platform/Examples/checker/input_pele_exec.yaml -> build/lib/pele_platform/Examples/checker
2020-09-22T13:56:52,909   copying pele_platform/Examples/checker/input_rotamer.yaml -> build/lib/pele_platform/Examples/checker
2020-09-22T13:56:52,915   copying pele_platform/Examples/checker/input_template.yaml -> build/lib/pele_platform/Examples/checker
2020-09-22T13:56:52,921   creating build/lib/pele_platform/Examples/constraints
2020-09-22T13:56:52,924   copying pele_platform/Examples/constraints/1zop.pdb -> build/lib/pele_platform/Examples/constraints
2020-09-22T13:56:52,955   copying pele_platform/Examples/constraints/4l3a_prep.pdb -> build/lib/pele_platform/Examples/constraints
2020-09-22T13:56:53,009   copying pele_platform/Examples/constraints/4qnr_prep.pdb -> build/lib/pele_platform/Examples/constraints
2020-09-22T13:56:53,065   copying pele_platform/Examples/constraints/4w4o_prep.pdb -> build/lib/pele_platform/Examples/constraints
2020-09-22T13:56:53,098   copying pele_platform/Examples/constraints/4w5i_prep.pdb -> build/lib/pele_platform/Examples/constraints
2020-09-22T13:56:53,131   copying pele_platform/Examples/constraints/4zu9_prep.pdb -> build/lib/pele_platform/Examples/constraints
2020-09-22T13:56:53,246   copying pele_platform/Examples/constraints/fail_input_permissive_constraints.yaml -> build/lib/pele_platform/Examples/constraints
2020-09-22T13:56:53,253   copying pele_platform/Examples/constraints/input_all_metal_constraints.yaml -> build/lib/pele_platform/Examples/constraints
2020-09-22T13:56:53,260   copying pele_platform/Examples/constraints/input_external_constraints.yaml -> build/lib/pele_platform/Examples/constraints
2020-09-22T13:56:53,266   copying pele_platform/Examples/constraints/input_ignore.yaml -> build/lib/pele_platform/Examples/constraints
2020-09-22T13:56:53,273   copying pele_platform/Examples/constraints/input_k.yaml -> build/lib/pele_platform/Examples/constraints
2020-09-22T13:56:53,279   copying pele_platform/Examples/constraints/input_metals.yaml -> build/lib/pele_platform/Examples/constraints
2020-09-22T13:56:53,286   copying pele_platform/Examples/constraints/input_no_metal_constraints.yaml -> build/lib/pele_platform/Examples/constraints
2020-09-22T13:56:53,293   copying pele_platform/Examples/constraints/input_permissive_exception.yaml -> build/lib/pele_platform/Examples/constraints
2020-09-22T13:56:53,299   copying pele_platform/Examples/constraints/input_ppp.pdb -> build/lib/pele_platform/Examples/constraints
2020-09-22T13:56:53,339   copying pele_platform/Examples/constraints/input_ppp.yaml -> build/lib/pele_platform/Examples/constraints
2020-09-22T13:56:53,346   copying pele_platform/Examples/constraints/input_square_planar.yaml -> build/lib/pele_platform/Examples/constraints
2020-09-22T13:56:53,353   copying pele_platform/Examples/constraints/input_square_planar_polarisation.yaml -> build/lib/pele_platform/Examples/constraints
2020-09-22T13:56:53,359   copying pele_platform/Examples/constraints/input_tetrahedral.yaml -> build/lib/pele_platform/Examples/constraints
2020-09-22T13:56:53,366   copying pele_platform/Examples/constraints/pass_input_permissive_constraints.yaml -> build/lib/pele_platform/Examples/constraints
2020-09-22T13:56:53,372   creating build/lib/pele_platform/Examples/exit
2020-09-22T13:56:53,375   copying pele_platform/Examples/exit/input.yaml -> build/lib/pele_platform/Examples/exit
2020-09-22T13:56:53,382   copying pele_platform/Examples/exit/input_defaults.yaml -> build/lib/pele_platform/Examples/exit
2020-09-22T13:56:53,388   creating build/lib/pele_platform/Examples/exit_soft
2020-09-22T13:56:53,391   copying pele_platform/Examples/exit_soft/input.yaml -> build/lib/pele_platform/Examples/exit_soft
2020-09-22T13:56:53,398   copying pele_platform/Examples/exit_soft/input_defaults.yaml -> build/lib/pele_platform/Examples/exit_soft
2020-09-22T13:56:53,404   creating build/lib/pele_platform/Examples/flags
2020-09-22T13:56:53,407   copying pele_platform/Examples/flags/input.yaml -> build/lib/pele_platform/Examples/flags
2020-09-22T13:56:53,414   creating build/lib/pele_platform/Examples/frag
2020-09-22T13:56:53,417   copying pele_platform/Examples/frag/1w7h_preparation_structure_2w.pdb -> build/lib/pele_platform/Examples/frag
2020-09-22T13:56:53,469   copying pele_platform/Examples/frag/1w7h_preparation_structure_2w_processed.pdb -> build/lib/pele_platform/Examples/frag
2020-09-22T13:56:53,520   copying pele_platform/Examples/frag/amino.pdb -> build/lib/pele_platform/Examples/frag
2020-09-22T13:56:53,525   copying pele_platform/Examples/frag/core.pdb -> build/lib/pele_platform/Examples/frag
2020-09-22T13:56:53,529   copying pele_platform/Examples/frag/flags.conf -> build/lib/pele_platform/Examples/frag
2020-09-22T13:56:53,534   copying pele_platform/Examples/frag/input_ai.yaml -> build/lib/pele_platform/Examples/frag
2020-09-22T13:56:53,541   copying pele_platform/Examples/frag/input_core.yaml -> build/lib/pele_platform/Examples/frag
2020-09-22T13:56:53,547   copying pele_platform/Examples/frag/input_core_sdf.yaml -> build/lib/pele_platform/Examples/frag
2020-09-22T13:56:53,554   copying pele_platform/Examples/frag/input_flags.yaml -> build/lib/pele_platform/Examples/frag
2020-09-22T13:56:53,559   copying pele_platform/Examples/frag/input_sim.yaml -> build/lib/pele_platform/Examples/frag
2020-09-22T13:56:53,564   copying pele_platform/Examples/frag/ligands.sdf -> build/lib/pele_platform/Examples/frag
2020-09-22T13:56:53,570   copying pele_platform/Examples/frag/sequential.conf -> build/lib/pele_platform/Examples/frag
2020-09-22T13:56:53,575   creating build/lib/pele_platform/Examples/frag/checker
2020-09-22T13:56:53,577   copying pele_platform/Examples/frag/checker/4RFM_proc.pdb -> build/lib/pele_platform/Examples/frag/checker
2020-09-22T13:56:53,584   copying pele_platform/Examples/frag/checker/4RFM_series.sdf -> build/lib/pele_platform/Examples/frag/checker
2020-09-22T13:56:53,592   copying pele_platform/Examples/frag/checker/receptor.sdf -> build/lib/pele_platform/Examples/frag/checker
2020-09-22T13:56:53,624   creating build/lib/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:53,627   copying pele_platform/Examples/frag/sdf_joiner/13_serie.sdf -> build/lib/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:53,641   copying pele_platform/Examples/frag/sdf_joiner/4RFM_core_sc.pdb -> build/lib/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:53,690   copying pele_platform/Examples/frag/sdf_joiner/4RFM_proc.pdb -> build/lib/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:53,742   copying pele_platform/Examples/frag/sdf_joiner/4RFM_series.sdf -> build/lib/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:53,749   copying pele_platform/Examples/frag/sdf_joiner/core2.pdb -> build/lib/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:53,788   copying pele_platform/Examples/frag/sdf_joiner/core3.pdb -> build/lib/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:53,806   copying pele_platform/Examples/frag/sdf_joiner/frag.sdf -> build/lib/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:53,813   copying pele_platform/Examples/frag/sdf_joiner/frag.yml -> build/lib/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:53,818   copying pele_platform/Examples/frag/sdf_joiner/frag2.sdf -> build/lib/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:53,830   copying pele_platform/Examples/frag/sdf_joiner/frag2.yml -> build/lib/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:53,836   copying pele_platform/Examples/frag/sdf_joiner/frag3.sdf -> build/lib/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:53,847   copying pele_platform/Examples/frag/sdf_joiner/frag3.yml -> build/lib/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:53,851   copying pele_platform/Examples/frag/sdf_joiner/frag31.sdf -> build/lib/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:53,861   copying pele_platform/Examples/frag/sdf_joiner/frag4.yml -> build/lib/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:53,868   copying pele_platform/Examples/frag/sdf_joiner/frag5.yml -> build/lib/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:53,874   copying pele_platform/Examples/frag/sdf_joiner/glide-dockSARS_core.pdb -> build/lib/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:53,953   creating build/lib/pele_platform/Examples/global
2020-09-22T13:56:53,955   copying pele_platform/Examples/global/input.yaml -> build/lib/pele_platform/Examples/global
2020-09-22T13:56:53,960   copying pele_platform/Examples/global/input_defaults.yaml -> build/lib/pele_platform/Examples/global
2020-09-22T13:56:53,966   copying pele_platform/Examples/global/input_inputs.yaml -> build/lib/pele_platform/Examples/global
2020-09-22T13:56:53,973   copying pele_platform/Examples/global/input_inputs_asterisc.yaml -> build/lib/pele_platform/Examples/global
2020-09-22T13:56:53,979   creating build/lib/pele_platform/Examples/gpcr
2020-09-22T13:56:53,982   copying pele_platform/Examples/gpcr/complex.pdb -> build/lib/pele_platform/Examples/gpcr
2020-09-22T13:56:54,049   copying pele_platform/Examples/gpcr/complex_processed.pdb -> build/lib/pele_platform/Examples/gpcr
2020-09-22T13:56:54,092   copying pele_platform/Examples/gpcr/input.yaml -> build/lib/pele_platform/Examples/gpcr
2020-09-22T13:56:54,098   copying pele_platform/Examples/gpcr/input_atom_error.yaml -> build/lib/pele_platform/Examples/gpcr
2020-09-22T13:56:54,105   copying pele_platform/Examples/gpcr/input_defaults.yaml -> build/lib/pele_platform/Examples/gpcr
2020-09-22T13:56:54,112   copying pele_platform/Examples/gpcr/input_defaults2.yaml -> build/lib/pele_platform/Examples/gpcr
2020-09-22T13:56:54,117   creating build/lib/pele_platform/Examples/induced_fit
2020-09-22T13:56:54,119   copying pele_platform/Examples/induced_fit/input_exhaustive.yaml -> build/lib/pele_platform/Examples/induced_fit
2020-09-22T13:56:54,124   copying pele_platform/Examples/induced_fit/input_exhaustive_defaults.yaml -> build/lib/pele_platform/Examples/induced_fit
2020-09-22T13:56:54,129   copying pele_platform/Examples/induced_fit/input_fast.yaml -> build/lib/pele_platform/Examples/induced_fit
2020-09-22T13:56:54,135   copying pele_platform/Examples/induced_fit/input_fast_defaults.yaml -> build/lib/pele_platform/Examples/induced_fit
2020-09-22T13:56:54,142   copying pele_platform/Examples/induced_fit/input_mae.yaml -> build/lib/pele_platform/Examples/induced_fit
2020-09-22T13:56:54,149   creating build/lib/pele_platform/Examples/inputs
2020-09-22T13:56:54,151   copying pele_platform/Examples/inputs/input.yaml -> build/lib/pele_platform/Examples/inputs
2020-09-22T13:56:54,157   copying pele_platform/Examples/inputs/mn4.sl -> build/lib/pele_platform/Examples/inputs
2020-09-22T13:56:54,162   copying pele_platform/Examples/inputs/nord3.sge -> build/lib/pele_platform/Examples/inputs
2020-09-22T13:56:54,167   creating build/lib/pele_platform/Examples/out_in
2020-09-22T13:56:54,169   copying pele_platform/Examples/out_in/1_3ZON_complex.pdb -> build/lib/pele_platform/Examples/out_in
2020-09-22T13:56:54,208   copying pele_platform/Examples/out_in/input.yaml -> build/lib/pele_platform/Examples/out_in
2020-09-22T13:56:54,214   copying pele_platform/Examples/out_in/input_default.yaml -> build/lib/pele_platform/Examples/out_in
2020-09-22T13:56:54,221   copying pele_platform/Examples/out_in/input_flag_error.yaml -> build/lib/pele_platform/Examples/out_in
2020-09-22T13:56:54,227   creating build/lib/pele_platform/Examples/pca
2020-09-22T13:56:54,230   copying pele_platform/Examples/pca/1.pdb -> build/lib/pele_platform/Examples/pca
2020-09-22T13:56:54,274   copying pele_platform/Examples/pca/2.pdb -> build/lib/pele_platform/Examples/pca
2020-09-22T13:56:54,317   copying pele_platform/Examples/pca/3.pdb -> build/lib/pele_platform/Examples/pca
2020-09-22T13:56:54,361   copying pele_platform/Examples/pca/input.yaml -> build/lib/pele_platform/Examples/pca
2020-09-22T13:56:54,368   copying pele_platform/Examples/pca/input_str.yaml -> build/lib/pele_platform/Examples/pca
2020-09-22T13:56:54,374   creating build/lib/pele_platform/Examples/preparation
2020-09-22T13:56:54,377   copying pele_platform/Examples/preparation/6qmk_correct.pdb -> build/lib/pele_platform/Examples/preparation
2020-09-22T13:56:54,426   copying pele_platform/Examples/preparation/6qmk_repeated.pdb -> build/lib/pele_platform/Examples/preparation
2020-09-22T13:56:54,480   copying pele_platform/Examples/preparation/complex.pdb -> build/lib/pele_platform/Examples/preparation
2020-09-22T13:56:54,518   copying pele_platform/Examples/preparation/complex_2.pdb -> build/lib/pele_platform/Examples/preparation
2020-09-22T13:56:54,577   copying pele_platform/Examples/preparation/input.yaml -> build/lib/pele_platform/Examples/preparation
2020-09-22T13:56:54,583   copying pele_platform/Examples/preparation/input_nonstandard.yaml -> build/lib/pele_platform/Examples/preparation
2020-09-22T13:56:54,590   copying pele_platform/Examples/preparation/input_space.yaml -> build/lib/pele_platform/Examples/preparation
2020-09-22T13:56:54,596   creating build/lib/pele_platform/Examples/production
2020-09-22T13:56:54,599   copying pele_platform/Examples/production/input.sl -> build/lib/pele_platform/Examples/production
2020-09-22T13:56:54,606   copying pele_platform/Examples/production/input_mae.yaml -> build/lib/pele_platform/Examples/production
2020-09-22T13:56:54,612   creating build/lib/pele_platform/Examples/rescoring
2020-09-22T13:56:54,615   copying pele_platform/Examples/rescoring/input.yaml -> build/lib/pele_platform/Examples/rescoring
2020-09-22T13:56:54,622   copying pele_platform/Examples/rescoring/input_defaults.yaml -> build/lib/pele_platform/Examples/rescoring
2020-09-22T13:56:54,628   creating build/lib/pele_platform/Examples/restart
2020-09-22T13:56:54,630   copying pele_platform/Examples/restart/input.yaml -> build/lib/pele_platform/Examples/restart
2020-09-22T13:56:54,635   creating build/lib/pele_platform/Examples/tutorials
2020-09-22T13:56:54,636   creating build/lib/pele_platform/Examples/tutorials/gpcr
2020-09-22T13:56:54,638   copying pele_platform/Examples/tutorials/gpcr/complex.pdb -> build/lib/pele_platform/Examples/tutorials/gpcr
2020-09-22T13:56:54,681   copying pele_platform/Examples/tutorials/gpcr/input.yaml -> build/lib/pele_platform/Examples/tutorials/gpcr
2020-09-22T13:56:54,687   creating build/lib/pele_platform/Examples/tutorials/induced_fit
2020-09-22T13:56:54,690   copying pele_platform/Examples/tutorials/induced_fit/docking.pdb -> build/lib/pele_platform/Examples/tutorials/induced_fit
2020-09-22T13:56:54,757   copying pele_platform/Examples/tutorials/induced_fit/input.yaml -> build/lib/pele_platform/Examples/tutorials/induced_fit
2020-09-22T13:56:54,762   creating build/lib/pele_platform/Examples/tutorials/ppi
2020-09-22T13:56:54,764   copying pele_platform/Examples/tutorials/ppi/4yy6_ligand.pdb -> build/lib/pele_platform/Examples/tutorials/ppi
2020-09-22T13:56:54,771   copying pele_platform/Examples/tutorials/ppi/4yy6_prep.pdb -> build/lib/pele_platform/Examples/tutorials/ppi
2020-09-22T13:56:54,796   copying pele_platform/Examples/tutorials/ppi/input.yaml -> build/lib/pele_platform/Examples/tutorials/ppi
2020-09-22T13:56:54,801   creating build/lib/pele_platform/Examples/water
2020-09-22T13:56:54,803   copying pele_platform/Examples/water/complex_induced.pdb -> build/lib/pele_platform/Examples/water
2020-09-22T13:56:54,824   copying pele_platform/Examples/water/complex_ref_LESSH2O.pdb -> build/lib/pele_platform/Examples/water
2020-09-22T13:56:54,873   copying pele_platform/Examples/water/input_all.yaml -> build/lib/pele_platform/Examples/water
2020-09-22T13:56:54,880   copying pele_platform/Examples/water/input_bs.yaml -> build/lib/pele_platform/Examples/water
2020-09-22T13:56:54,887   copying pele_platform/Examples/water/input_bs_defaults.yaml -> build/lib/pele_platform/Examples/water
2020-09-22T13:56:54,893   copying pele_platform/Examples/water/input_induced.yaml -> build/lib/pele_platform/Examples/water
2020-09-22T13:56:54,899   copying pele_platform/Examples/water/input_lig.yaml -> build/lib/pele_platform/Examples/water
2020-09-22T13:56:54,904   copying pele_platform/Examples/water/input_lig_defaults.yaml -> build/lib/pele_platform/Examples/water
2020-09-22T13:56:54,909   copying pele_platform/Examples/water/input_nwaters.yaml -> build/lib/pele_platform/Examples/water
2020-09-22T13:56:54,915   copying pele_platform/Examples/water/input_previous_water.yaml -> build/lib/pele_platform/Examples/water
2020-09-22T13:56:54,922   copying pele_platform/Examples/water/water_processed.pdb -> build/lib/pele_platform/Examples/water
2020-09-22T13:56:54,974   creating build/lib/pele_platform/Templates
2020-09-22T13:56:54,976   copying pele_platform/Templates/pele_template.conf -> build/lib/pele_platform/Templates
2020-09-22T13:56:54,982   copying pele_platform/Templates/solventParamsHCTOBC.txt -> build/lib/pele_platform/Templates
2020-09-22T13:56:54,994   copying pele_platform/Templates/template_adaptive.conf -> build/lib/pele_platform/Templates
2020-09-22T13:56:55,041   UPDATING build/lib/pele_platform/_version.py
2020-09-22T13:56:55,045   set build/lib/pele_platform/_version.py to 'v1.5.1'
2020-09-22T13:56:55,052   installing to build/bdist.linux-armv7l/wheel
2020-09-22T13:56:55,052   running install
2020-09-22T13:56:55,054   running install_lib
2020-09-22T13:56:55,062   creating build/bdist.linux-armv7l
2020-09-22T13:56:55,063   creating build/bdist.linux-armv7l/wheel
2020-09-22T13:56:55,094   creating build/bdist.linux-armv7l/wheel/pele_platform
2020-09-22T13:56:55,099   creating build/bdist.linux-armv7l/wheel/pele_platform/Templates
2020-09-22T13:56:55,102   copying build/lib/pele_platform/Templates/solventParamsHCTOBC.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Templates
2020-09-22T13:56:55,115   copying build/lib/pele_platform/Templates/template_adaptive.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Templates
2020-09-22T13:56:55,121   copying build/lib/pele_platform/Templates/pele_template.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Templates
2020-09-22T13:56:55,128   creating build/bdist.linux-armv7l/wheel/pele_platform/constants
2020-09-22T13:56:55,130   copying build/lib/pele_platform/constants/pele_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/constants
2020-09-22T13:56:55,136   copying build/lib/pele_platform/constants/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/constants
2020-09-22T13:56:55,139   copying build/lib/pele_platform/constants/constants.py -> build/bdist.linux-armv7l/wheel/pele_platform/constants
2020-09-22T13:56:55,147   creating build/bdist.linux-armv7l/wheel/pele_platform/gpcr
2020-09-22T13:56:55,150   copying build/lib/pele_platform/gpcr/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/gpcr
2020-09-22T13:56:55,156   copying build/lib/pele_platform/gpcr/main.py -> build/bdist.linux-armv7l/wheel/pele_platform/gpcr
2020-09-22T13:56:55,164   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities
2020-09-22T13:56:55,168   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters
2020-09-22T13:56:55,173   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams
2020-09-22T13:56:55,178   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
2020-09-22T13:56:55,181   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/MSMParams/msm_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
2020-09-22T13:56:55,188   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/MSMParams/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
2020-09-22T13:56:55,194   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
2020-09-22T13:56:55,197   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/BiasParams/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
2020-09-22T13:56:55,202   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/BiasParams/bias_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
2020-09-22T13:56:55,209   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
2020-09-22T13:56:55,212   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/InOutParams/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
2020-09-22T13:56:55,217   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/InOutParams/inout_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
2020-09-22T13:56:55,225   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PCA
2020-09-22T13:56:55,228   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/PCA/pca.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PCA
2020-09-22T13:56:55,234   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/PCA/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PCA
2020-09-22T13:56:55,241   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
2020-09-22T13:56:55,243   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/GlideParams/glide_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
2020-09-22T13:56:55,251   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/GlideParams/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
2020-09-22T13:56:55,257   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PPI
2020-09-22T13:56:55,260   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/PPI/ppi.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PPI
2020-09-22T13:56:55,266   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/PPI/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PPI
2020-09-22T13:56:55,273   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/Allosteric
2020-09-22T13:56:55,276   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/Allosteric/allosteric.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/Allosteric
2020-09-22T13:56:55,282   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/Allosteric/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/Allosteric
2020-09-22T13:56:55,287   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams
2020-09-22T13:56:55,292   copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/simulation_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams
2020-09-22T13:56:55,299   copying build/lib/pele_platform/Utilities/Parameters/pele_env.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters
2020-09-22T13:56:55,305   copying build/lib/pele_platform/Utilities/Parameters/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters
2020-09-22T13:56:55,310   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationFolders
2020-09-22T13:56:55,312   copying build/lib/pele_platform/Utilities/Parameters/SimulationFolders/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationFolders
2020-09-22T13:56:55,316   copying build/lib/pele_platform/Utilities/Parameters/SimulationFolders/simulation_folders.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationFolders
2020-09-22T13:56:55,320   copying build/lib/pele_platform/Utilities/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities
2020-09-22T13:56:55,326   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2020-09-22T13:56:55,328   copying build/lib/pele_platform/Utilities/Helpers/constraints.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2020-09-22T13:56:55,335   copying build/lib/pele_platform/Utilities/Helpers/conda_deployment.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2020-09-22T13:56:55,340   copying build/lib/pele_platform/Utilities/Helpers/launcher.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2020-09-22T13:56:55,346   copying build/lib/pele_platform/Utilities/Helpers/calculatePCA4PELE.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2020-09-22T13:56:55,355   copying build/lib/pele_platform/Utilities/Helpers/simulation.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2020-09-22T13:56:55,361   copying build/lib/pele_platform/Utilities/Helpers/bestStructs.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2020-09-22T13:56:55,370   creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/Metals
2020-09-22T13:56:55,373   copying build/lib/pele_platform/Utilities/Helpers/Metals/metal_polarisation.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/Metals
2020-09-22T13:56:55,379   copying build/lib/pele_platform/Utilities/Helpers/Metals/metal_constraints.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/Metals
2020-09-22T13:56:55,386   copying build/lib/pele_platform/Utilities/Helpers/Metals/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers/Metals
2020-09-22T13:56:55,391   copying build/lib/pele_platform/Utilities/Helpers/water.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2020-09-22T13:56:55,398   copying build/lib/pele_platform/Utilities/Helpers/template_builder.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2020-09-22T13:56:55,404   copying build/lib/pele_platform/Utilities/Helpers/center_of_mass.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2020-09-22T13:56:55,410   copying build/lib/pele_platform/Utilities/Helpers/helpers.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2020-09-22T13:56:55,417   copying build/lib/pele_platform/Utilities/Helpers/solventOBCParamsGenerator.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2020-09-22T13:56:55,424   copying build/lib/pele_platform/Utilities/Helpers/plop_launcher.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2020-09-22T13:56:55,430   copying build/lib/pele_platform/Utilities/Helpers/protein_wizard.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2020-09-22T13:56:55,436   copying build/lib/pele_platform/Utilities/Helpers/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2020-09-22T13:56:55,441   copying build/lib/pele_platform/Utilities/Helpers/system_prep.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2020-09-22T13:56:55,447   copying build/lib/pele_platform/Utilities/Helpers/randomize.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2020-09-22T13:56:55,455   copying build/lib/pele_platform/Utilities/Helpers/yaml_parser.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2020-09-22T13:56:55,462   copying build/lib/pele_platform/Utilities/Helpers/missing_residues.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
2020-09-22T13:56:55,469   creating build/bdist.linux-armv7l/wheel/pele_platform/RNA
2020-09-22T13:56:55,472   copying build/lib/pele_platform/RNA/prep.py -> build/bdist.linux-armv7l/wheel/pele_platform/RNA
2020-09-22T13:56:55,478   copying build/lib/pele_platform/RNA/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/RNA
2020-09-22T13:56:55,483   copying build/lib/pele_platform/_version.py -> build/bdist.linux-armv7l/wheel/pele_platform
2020-09-22T13:56:55,490   creating build/bdist.linux-armv7l/wheel/pele_platform/Analysis
2020-09-22T13:56:55,493   copying build/lib/pele_platform/Analysis/pdf_report.py -> build/bdist.linux-armv7l/wheel/pele_platform/Analysis
2020-09-22T13:56:55,499   copying build/lib/pele_platform/Analysis/to_mae.py -> build/bdist.linux-armv7l/wheel/pele_platform/Analysis
2020-09-22T13:56:55,505   copying build/lib/pele_platform/Analysis/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Analysis
2020-09-22T13:56:55,509   copying build/lib/pele_platform/Analysis/plots.py -> build/bdist.linux-armv7l/wheel/pele_platform/Analysis
2020-09-22T13:56:55,519   creating build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2020-09-22T13:56:55,521   copying build/lib/pele_platform/Adaptive/ligand_parametrization.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2020-09-22T13:56:55,528   copying build/lib/pele_platform/Adaptive/box.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2020-09-22T13:56:55,535   copying build/lib/pele_platform/Adaptive/pca.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2020-09-22T13:56:55,541   copying build/lib/pele_platform/Adaptive/simulation.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2020-09-22T13:56:55,548   copying build/lib/pele_platform/Adaptive/solvent.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2020-09-22T13:56:55,553   copying build/lib/pele_platform/Adaptive/metrics.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2020-09-22T13:56:55,558   copying build/lib/pele_platform/Adaptive/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
2020-09-22T13:56:55,562   creating build/bdist.linux-armv7l/wheel/pele_platform/PPI
2020-09-22T13:56:55,564   copying build/lib/pele_platform/PPI/simulation_launcher.py -> build/bdist.linux-armv7l/wheel/pele_platform/PPI
2020-09-22T13:56:55,569   copying build/lib/pele_platform/PPI/preparation.py -> build/bdist.linux-armv7l/wheel/pele_platform/PPI
2020-09-22T13:56:55,575   copying build/lib/pele_platform/PPI/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/PPI
2020-09-22T13:56:55,580   copying build/lib/pele_platform/PPI/main.py -> build/bdist.linux-armv7l/wheel/pele_platform/PPI
2020-09-22T13:56:55,587   creating build/bdist.linux-armv7l/wheel/pele_platform/Allosteric
2020-09-22T13:56:55,590   copying build/lib/pele_platform/Allosteric/cluster.py -> build/bdist.linux-armv7l/wheel/pele_platform/Allosteric
2020-09-22T13:56:55,595   copying build/lib/pele_platform/Allosteric/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Allosteric
2020-09-22T13:56:55,599   copying build/lib/pele_platform/Allosteric/main.py -> build/bdist.linux-armv7l/wheel/pele_platform/Allosteric
2020-09-22T13:56:55,605   creating build/bdist.linux-armv7l/wheel/pele_platform/Errors
2020-09-22T13:56:55,606   copying build/lib/pele_platform/Errors/custom_errors.py -> build/bdist.linux-armv7l/wheel/pele_platform/Errors
2020-09-22T13:56:55,611   copying build/lib/pele_platform/Errors/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Errors
2020-09-22T13:56:55,616   copying build/lib/pele_platform/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform
2020-09-22T13:56:55,622   copying build/lib/pele_platform/main.py -> build/bdist.linux-armv7l/wheel/pele_platform
2020-09-22T13:56:55,629   creating build/bdist.linux-armv7l/wheel/pele_platform/Frag
2020-09-22T13:56:55,632   copying build/lib/pele_platform/Frag/fragments.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2020-09-22T13:56:55,638   creating build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2020-09-22T13:56:55,640   copying build/lib/pele_platform/Frag/parameters/simulation.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2020-09-22T13:56:55,645   copying build/lib/pele_platform/Frag/parameters/opcionals.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2020-09-22T13:56:55,649   copying build/lib/pele_platform/Frag/parameters/water.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2020-09-22T13:56:55,653   copying build/lib/pele_platform/Frag/parameters/metrics.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2020-09-22T13:56:55,659   copying build/lib/pele_platform/Frag/parameters/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2020-09-22T13:56:55,664   copying build/lib/pele_platform/Frag/parameters/main.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2020-09-22T13:56:55,670   copying build/lib/pele_platform/Frag/parameters/files.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag/parameters
2020-09-22T13:56:55,675   copying build/lib/pele_platform/Frag/simulation.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2020-09-22T13:56:55,680   copying build/lib/pele_platform/Frag/generative_model.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2020-09-22T13:56:55,684   copying build/lib/pele_platform/Frag/checker.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2020-09-22T13:56:55,689   copying build/lib/pele_platform/Frag/atoms.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2020-09-22T13:56:55,693   copying build/lib/pele_platform/Frag/helpers.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2020-09-22T13:56:55,700   copying build/lib/pele_platform/Frag/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
2020-09-22T13:56:55,706   creating build/bdist.linux-armv7l/wheel/pele_platform/out_in
2020-09-22T13:56:55,709   copying build/lib/pele_platform/out_in/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/out_in
2020-09-22T13:56:55,715   copying build/lib/pele_platform/out_in/main.py -> build/bdist.linux-armv7l/wheel/pele_platform/out_in
2020-09-22T13:56:55,720   creating build/bdist.linux-armv7l/wheel/pele_platform/features
2020-09-22T13:56:55,722   copying build/lib/pele_platform/features/frag.py -> build/bdist.linux-armv7l/wheel/pele_platform/features
2020-09-22T13:56:55,727   copying build/lib/pele_platform/features/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/features
2020-09-22T13:56:55,731   copying build/lib/pele_platform/features/adaptive.py -> build/bdist.linux-armv7l/wheel/pele_platform/features
2020-09-22T13:56:55,741   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples
2020-09-22T13:56:55,746   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/global
2020-09-22T13:56:55,749   copying build/lib/pele_platform/Examples/global/input_inputs_asterisc.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/global
2020-09-22T13:56:55,756   copying build/lib/pele_platform/Examples/global/input_inputs.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/global
2020-09-22T13:56:55,760   copying build/lib/pele_platform/Examples/global/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/global
2020-09-22T13:56:55,764   copying build/lib/pele_platform/Examples/global/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/global
2020-09-22T13:56:55,770   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/bias
2020-09-22T13:56:55,772   copying build/lib/pele_platform/Examples/bias/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/bias
2020-09-22T13:56:55,808   copying build/lib/pele_platform/Examples/bias/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/bias
2020-09-22T13:56:55,813   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/rescoring
2020-09-22T13:56:55,815   copying build/lib/pele_platform/Examples/rescoring/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/rescoring
2020-09-22T13:56:55,822   copying build/lib/pele_platform/Examples/rescoring/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/rescoring
2020-09-22T13:56:55,830   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/inputs
2020-09-22T13:56:55,833   copying build/lib/pele_platform/Examples/inputs/nord3.sge -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/inputs
2020-09-22T13:56:55,839   copying build/lib/pele_platform/Examples/inputs/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/inputs
2020-09-22T13:56:55,843   copying build/lib/pele_platform/Examples/inputs/mn4.sl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/inputs
2020-09-22T13:56:55,848   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit_soft
2020-09-22T13:56:55,850   copying build/lib/pele_platform/Examples/exit_soft/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit_soft
2020-09-22T13:56:55,855   copying build/lib/pele_platform/Examples/exit_soft/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit_soft
2020-09-22T13:56:55,862   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials
2020-09-22T13:56:55,866   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/gpcr
2020-09-22T13:56:55,870   copying build/lib/pele_platform/Examples/tutorials/gpcr/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/gpcr
2020-09-22T13:56:55,876   copying build/lib/pele_platform/Examples/tutorials/gpcr/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/gpcr
2020-09-22T13:56:55,920   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/induced_fit
2020-09-22T13:56:55,922   copying build/lib/pele_platform/Examples/tutorials/induced_fit/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/induced_fit
2020-09-22T13:56:55,927   copying build/lib/pele_platform/Examples/tutorials/induced_fit/docking.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/induced_fit
2020-09-22T13:56:55,991   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/ppi
2020-09-22T13:56:55,993   copying build/lib/pele_platform/Examples/tutorials/ppi/4yy6_ligand.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/ppi
2020-09-22T13:56:55,1000   copying build/lib/pele_platform/Examples/tutorials/ppi/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/ppi
2020-09-22T13:56:56,005   copying build/lib/pele_platform/Examples/tutorials/ppi/4yy6_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/tutorials/ppi
2020-09-22T13:56:56,031   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/box
2020-09-22T13:56:56,033   copying build/lib/pele_platform/Examples/box/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/box
2020-09-22T13:56:56,039   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2020-09-22T13:56:56,042   copying build/lib/pele_platform/Examples/constraints/input_external_constraints.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2020-09-22T13:56:56,048   copying build/lib/pele_platform/Examples/constraints/1zop.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2020-09-22T13:56:56,077   copying build/lib/pele_platform/Examples/constraints/input_k.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2020-09-22T13:56:56,082   copying build/lib/pele_platform/Examples/constraints/input_ppp.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2020-09-22T13:56:56,142   copying build/lib/pele_platform/Examples/constraints/4qnr_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2020-09-22T13:56:56,194   copying build/lib/pele_platform/Examples/constraints/input_permissive_exception.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2020-09-22T13:56:56,198   copying build/lib/pele_platform/Examples/constraints/4w4o_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2020-09-22T13:56:56,229   copying build/lib/pele_platform/Examples/constraints/input_metals.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2020-09-22T13:56:56,234   copying build/lib/pele_platform/Examples/constraints/fail_input_permissive_constraints.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2020-09-22T13:56:56,238   copying build/lib/pele_platform/Examples/constraints/input_ignore.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2020-09-22T13:56:56,242   copying build/lib/pele_platform/Examples/constraints/4l3a_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2020-09-22T13:56:56,297   copying build/lib/pele_platform/Examples/constraints/input_all_metal_constraints.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2020-09-22T13:56:56,303   copying build/lib/pele_platform/Examples/constraints/input_ppp.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2020-09-22T13:56:56,308   copying build/lib/pele_platform/Examples/constraints/input_square_planar_polarisation.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2020-09-22T13:56:56,314   copying build/lib/pele_platform/Examples/constraints/input_tetrahedral.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2020-09-22T13:56:56,320   copying build/lib/pele_platform/Examples/constraints/input_square_planar.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2020-09-22T13:56:56,325   copying build/lib/pele_platform/Examples/constraints/4w5i_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2020-09-22T13:56:56,358   copying build/lib/pele_platform/Examples/constraints/4zu9_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2020-09-22T13:56:56,466   copying build/lib/pele_platform/Examples/constraints/input_no_metal_constraints.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2020-09-22T13:56:56,472   copying build/lib/pele_platform/Examples/constraints/pass_input_permissive_constraints.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
2020-09-22T13:56:56,479   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2020-09-22T13:56:56,482   copying build/lib/pele_platform/Examples/gpcr/complex_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2020-09-22T13:56:56,525   copying build/lib/pele_platform/Examples/gpcr/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2020-09-22T13:56:56,529   copying build/lib/pele_platform/Examples/gpcr/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2020-09-22T13:56:56,572   copying build/lib/pele_platform/Examples/gpcr/input_atom_error.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2020-09-22T13:56:56,578   copying build/lib/pele_platform/Examples/gpcr/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2020-09-22T13:56:56,584   copying build/lib/pele_platform/Examples/gpcr/input_defaults2.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/gpcr
2020-09-22T13:56:56,592   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2020-09-22T13:56:56,594   copying build/lib/pele_platform/Examples/Msm/AS4_INIT.mae -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2020-09-22T13:56:56,600   copying build/lib/pele_platform/Examples/Msm/PR_AS4.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2020-09-22T13:56:56,637   copying build/lib/pele_platform/Examples/Msm/PR_1A28_xray_-_minimized_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2020-09-22T13:56:56,677   copying build/lib/pele_platform/Examples/Msm/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2020-09-22T13:56:56,683   copying build/lib/pele_platform/Examples/Msm/PR_1A28_protein.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2020-09-22T13:56:56,722   copying build/lib/pele_platform/Examples/Msm/PR_1A28_xray_-_minimized.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
2020-09-22T13:56:56,763   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/RNA
2020-09-22T13:56:56,766   copying build/lib/pele_platform/Examples/RNA/5C45_prep_proc.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/RNA
2020-09-22T13:56:56,810   copying build/lib/pele_platform/Examples/RNA/input_induced.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/RNA
2020-09-22T13:56:56,815   copying build/lib/pele_platform/Examples/RNA/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/RNA
2020-09-22T13:56:56,821   copying build/lib/pele_platform/Examples/RNA/5C45_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/RNA
2020-09-22T13:56:56,865   copying build/lib/pele_platform/Examples/RNA/2l94.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/RNA
2020-09-22T13:56:56,872   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis
2020-09-22T13:56:56,877   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2020-09-22T13:56:56,882   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/inputs
2020-09-22T13:56:56,885   copying build/lib/pele_platform/Examples/analysis/data/inputs/input3.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/inputs
2020-09-22T13:56:56,925   copying build/lib/pele_platform/Examples/analysis/data/inputs/input1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/inputs
2020-09-22T13:56:56,966   copying build/lib/pele_platform/Examples/analysis/data/inputs/input2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/inputs
2020-09-22T13:56:57,006   copying build/lib/pele_platform/Examples/analysis/data/mgz -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2020-09-22T13:56:57,011   copying build/lib/pele_platform/Examples/analysis/data/STR.rot.assign -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2020-09-22T13:56:57,018   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output
2020-09-22T13:56:57,020   copying build/lib/pele_platform/Examples/analysis/data/output/originalControlFile.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output
2020-09-22T13:56:57,029   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/synchronization
2020-09-22T13:56:57,031   copying build/lib/pele_platform/Examples/analysis/data/output/synchronization/syncFile.lock -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/synchronization
2020-09-22T13:56:57,040   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0
2020-09-22T13:56:57,044   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0/clustering
2020-09-22T13:56:57,047   copying build/lib/pele_platform/Examples/analysis/data/output/0/clustering/summary.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0/clustering
2020-09-22T13:56:57,054   copying build/lib/pele_platform/Examples/analysis/data/output/0/clustering/object.pkl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0/clustering
2020-09-22T13:56:57,094   copying build/lib/pele_platform/Examples/analysis/data/output/0/topologyMapping.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0
2020-09-22T13:56:57,099   copying build/lib/pele_platform/Examples/analysis/data/output/0/trajectory_1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0
2020-09-22T13:56:57,163   copying build/lib/pele_platform/Examples/analysis/data/output/0/report_1 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/0
2020-09-22T13:56:57,171   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/topologies
2020-09-22T13:56:57,174   copying build/lib/pele_platform/Examples/analysis/data/output/topologies/topology_0.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/topologies
2020-09-22T13:56:57,214   copying build/lib/pele_platform/Examples/analysis/data/output/topologies/topologies.pkl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/output/topologies
2020-09-22T13:56:57,250   copying build/lib/pele_platform/Examples/analysis/data/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2020-09-22T13:56:57,257   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc
2020-09-22T13:56:57,262   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/0
2020-09-22T13:56:57,265   copying build/lib/pele_platform/Examples/analysis/data/xtc/0/report_2 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/0
2020-09-22T13:56:57,272   copying build/lib/pele_platform/Examples/analysis/data/xtc/0/trajectory_2.xtc -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/0
2020-09-22T13:56:57,279   copying build/lib/pele_platform/Examples/analysis/data/xtc/0/trajectory_1.xtc -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/0
2020-09-22T13:56:57,286   copying build/lib/pele_platform/Examples/analysis/data/xtc/0/report_1 -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/0
2020-09-22T13:56:57,293   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/topologies
2020-09-22T13:56:57,296   copying build/lib/pele_platform/Examples/analysis/data/xtc/topologies/topology_0.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc/topologies
2020-09-22T13:56:57,313   copying build/lib/pele_platform/Examples/analysis/data/xtc/summary.csv -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/xtc
2020-09-22T13:56:57,319   copying build/lib/pele_platform/Examples/analysis/data/input_flags0.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2020-09-22T13:56:57,325   copying build/lib/pele_platform/Examples/analysis/data/adaptive.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2020-09-22T13:56:57,331   copying build/lib/pele_platform/Examples/analysis/data/input_mae.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2020-09-22T13:56:57,337   copying build/lib/pele_platform/Examples/analysis/data/pele.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2020-09-22T13:56:57,345   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/results
2020-09-22T13:56:57,348   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/results/BestStructs
2020-09-22T13:56:57,350   copying build/lib/pele_platform/Examples/analysis/data/results/BestStructs/epoch0_trajectory_2.1_BindingEnergy1.84474.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/results/BestStructs
2020-09-22T13:56:57,365   copying build/lib/pele_platform/Examples/analysis/data/results/BestStructs/epoch0_trajectory_1.0_BindingEnergy1.26468.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/results/BestStructs
2020-09-22T13:56:57,381   copying build/lib/pele_platform/Examples/analysis/data/results/BestStructs/epoch0_trajectory_2.0_BindingEnergy0.644256.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/results/BestStructs
2020-09-22T13:56:57,398   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/results/Plots
2020-09-22T13:56:57,400   copying build/lib/pele_platform/Examples/analysis/data/results/Plots/sasaLig_Binding_Energy_plot.png -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/results/Plots
2020-09-22T13:56:57,408   copying build/lib/pele_platform/Examples/analysis/data/results/Plots/currentEnergy_Binding_Energy_Binding_Energy.1_plot.png -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/results/Plots
2020-09-22T13:56:57,416   copying build/lib/pele_platform/Examples/analysis/data/results/Plots/currentEnergy_Binding_Energy_sasaLig_plot.png -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/results/Plots
2020-09-22T13:56:57,425   copying build/lib/pele_platform/Examples/analysis/data/results/Plots/Binding_Energy.1_Binding_Energy_plot.png -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/results/Plots
2020-09-22T13:56:57,433   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/results/clusters
2020-09-22T13:56:57,435   copying build/lib/pele_platform/Examples/analysis/data/results/clusters/clusters_Binding Energy_boxplot.png -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data/results/clusters
2020-09-22T13:56:57,442   copying build/lib/pele_platform/Examples/analysis/data/input_flags.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2020-09-22T13:56:57,446   copying build/lib/pele_platform/Examples/analysis/data/strz -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2020-09-22T13:56:57,451   copying build/lib/pele_platform/Examples/analysis/data/MG.rot.assign -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis/data
2020-09-22T13:56:57,456   copying build/lib/pele_platform/Examples/analysis/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis
2020-09-22T13:56:57,462   copying build/lib/pele_platform/Examples/analysis/input_flags0.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis
2020-09-22T13:56:57,468   copying build/lib/pele_platform/Examples/analysis/input_mae.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis
2020-09-22T13:56:57,473   copying build/lib/pele_platform/Examples/analysis/input_flags.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis
2020-09-22T13:56:57,479   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
2020-09-22T13:56:57,481   copying build/lib/pele_platform/Examples/induced_fit/input_exhaustive_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
2020-09-22T13:56:57,485   copying build/lib/pele_platform/Examples/induced_fit/input_fast_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
2020-09-22T13:56:57,491   copying build/lib/pele_platform/Examples/induced_fit/input_mae.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
2020-09-22T13:56:57,497   copying build/lib/pele_platform/Examples/induced_fit/input_exhaustive.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
2020-09-22T13:56:57,503   copying build/lib/pele_platform/Examples/induced_fit/input_fast.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
2020-09-22T13:56:57,510   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
2020-09-22T13:56:57,512   copying build/lib/pele_platform/Examples/Adaptive/STR.rot.assign -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
2020-09-22T13:56:57,517   copying build/lib/pele_platform/Examples/Adaptive/pele_file_4Adaptive.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
2020-09-22T13:56:57,523   copying build/lib/pele_platform/Examples/Adaptive/adaptive.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
2020-09-22T13:56:57,527   copying build/lib/pele_platform/Examples/Adaptive/test.sl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
2020-09-22T13:56:57,533   copying build/lib/pele_platform/Examples/Adaptive/strz -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
2020-09-22T13:56:57,546   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/flags
2020-09-22T13:56:57,549   copying build/lib/pele_platform/Examples/flags/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/flags
2020-09-22T13:56:57,555   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2020-09-22T13:56:57,557   copying build/lib/pele_platform/Examples/preparation/input_nonstandard.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2020-09-22T13:56:57,561   copying build/lib/pele_platform/Examples/preparation/6qmk_correct.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2020-09-22T13:56:57,608   copying build/lib/pele_platform/Examples/preparation/input_space.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2020-09-22T13:56:57,614   copying build/lib/pele_platform/Examples/preparation/6qmk_repeated.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2020-09-22T13:56:57,689   copying build/lib/pele_platform/Examples/preparation/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2020-09-22T13:56:57,695   copying build/lib/pele_platform/Examples/preparation/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2020-09-22T13:56:57,733   copying build/lib/pele_platform/Examples/preparation/complex_2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/preparation
2020-09-22T13:56:57,794   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2020-09-22T13:56:57,797   copying build/lib/pele_platform/Examples/water/input_lig_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2020-09-22T13:56:57,803   copying build/lib/pele_platform/Examples/water/input_bs_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2020-09-22T13:56:57,809   copying build/lib/pele_platform/Examples/water/water_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2020-09-22T13:56:57,859   copying build/lib/pele_platform/Examples/water/input_induced.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2020-09-22T13:56:57,865   copying build/lib/pele_platform/Examples/water/input_nwaters.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2020-09-22T13:56:57,871   copying build/lib/pele_platform/Examples/water/input_all.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2020-09-22T13:56:57,877   copying build/lib/pele_platform/Examples/water/input_lig.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2020-09-22T13:56:57,882   copying build/lib/pele_platform/Examples/water/complex_induced.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2020-09-22T13:56:57,902   copying build/lib/pele_platform/Examples/water/input_previous_water.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2020-09-22T13:56:57,908   copying build/lib/pele_platform/Examples/water/complex_ref_LESSH2O.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2020-09-22T13:56:57,957   copying build/lib/pele_platform/Examples/water/input_bs.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
2020-09-22T13:56:57,964   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2020-09-22T13:56:57,967   copying build/lib/pele_platform/Examples/PPI/1tnf_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2020-09-22T13:56:58,029   copying build/lib/pele_platform/Examples/PPI/1tnf_ligand.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2020-09-22T13:56:58,036   copying build/lib/pele_platform/Examples/PPI/1f47_ligand.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2020-09-22T13:56:58,043   copying build/lib/pele_platform/Examples/PPI/input_skipref.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2020-09-22T13:56:58,049   copying build/lib/pele_platform/Examples/PPI/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2020-09-22T13:56:58,054   copying build/lib/pele_platform/Examples/PPI/input_folder.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2020-09-22T13:56:58,059   copying build/lib/pele_platform/Examples/PPI/1f47_prep.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/PPI
2020-09-22T13:56:58,084   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2020-09-22T13:56:58,087   copying build/lib/pele_platform/Examples/frag/amino.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2020-09-22T13:56:58,093   copying build/lib/pele_platform/Examples/frag/input_core_sdf.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2020-09-22T13:56:58,098   copying build/lib/pele_platform/Examples/frag/1w7h_preparation_structure_2w.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2020-09-22T13:56:58,150   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:58,153   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag4.yml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:58,160   copying build/lib/pele_platform/Examples/frag/sdf_joiner/4RFM_proc.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:58,211   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag5.yml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:58,217   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag3.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:58,228   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag.yml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:58,233   copying build/lib/pele_platform/Examples/frag/sdf_joiner/core3.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:58,252   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag2.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:58,261   copying build/lib/pele_platform/Examples/frag/sdf_joiner/glide-dockSARS_core.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:58,340   copying build/lib/pele_platform/Examples/frag/sdf_joiner/4RFM_core_sc.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:58,390   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:58,398   copying build/lib/pele_platform/Examples/frag/sdf_joiner/core2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:58,437   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag31.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:58,446   copying build/lib/pele_platform/Examples/frag/sdf_joiner/4RFM_series.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:58,455   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag2.yml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:58,460   copying build/lib/pele_platform/Examples/frag/sdf_joiner/frag3.yml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:58,466   copying build/lib/pele_platform/Examples/frag/sdf_joiner/13_serie.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/sdf_joiner
2020-09-22T13:56:58,477   copying build/lib/pele_platform/Examples/frag/sequential.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2020-09-22T13:56:58,481   copying build/lib/pele_platform/Examples/frag/input_core.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2020-09-22T13:56:58,485   copying build/lib/pele_platform/Examples/frag/input_ai.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2020-09-22T13:56:58,490   copying build/lib/pele_platform/Examples/frag/ligands.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2020-09-22T13:56:58,496   copying build/lib/pele_platform/Examples/frag/flags.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2020-09-22T13:56:58,503   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/checker
2020-09-22T13:56:58,506   copying build/lib/pele_platform/Examples/frag/checker/4RFM_proc.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/checker
2020-09-22T13:56:58,511   copying build/lib/pele_platform/Examples/frag/checker/4RFM_series.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/checker
2020-09-22T13:56:58,516   copying build/lib/pele_platform/Examples/frag/checker/receptor.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag/checker
2020-09-22T13:56:58,546   copying build/lib/pele_platform/Examples/frag/core.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2020-09-22T13:56:58,551   copying build/lib/pele_platform/Examples/frag/input_flags.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2020-09-22T13:56:58,557   copying build/lib/pele_platform/Examples/frag/1w7h_preparation_structure_2w_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2020-09-22T13:56:58,608   copying build/lib/pele_platform/Examples/frag/input_sim.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
2020-09-22T13:56:58,615   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/restart
2020-09-22T13:56:58,618   copying build/lib/pele_platform/Examples/restart/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/restart
2020-09-22T13:56:58,626   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/Allosteric
2020-09-22T13:56:58,629   copying build/lib/pele_platform/Examples/Allosteric/input_global.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Allosteric
2020-09-22T13:56:58,635   copying build/lib/pele_platform/Examples/Allosteric/input_global_xtc.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Allosteric
2020-09-22T13:56:58,640   copying build/lib/pele_platform/Examples/Allosteric/input_skipref.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Allosteric
2020-09-22T13:56:58,646   copying build/lib/pele_platform/Examples/Allosteric/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Allosteric
2020-09-22T13:56:58,693   copying build/lib/pele_platform/Examples/Allosteric/input_folder.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Allosteric
2020-09-22T13:56:58,698   copying build/lib/pele_platform/Examples/Allosteric/input_restart.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Allosteric
2020-09-22T13:56:58,705   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/production
2020-09-22T13:56:58,708   copying build/lib/pele_platform/Examples/production/input.sl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/production
2020-09-22T13:56:58,713   copying build/lib/pele_platform/Examples/production/input_mae.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/production
2020-09-22T13:56:58,717   copying build/lib/pele_platform/Examples/test.sl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples
2020-09-22T13:56:58,722   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2020-09-22T13:56:58,724   copying build/lib/pele_platform/Examples/checker/input_pele_exec.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2020-09-22T13:56:58,728   copying build/lib/pele_platform/Examples/checker/input_rotamer.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2020-09-22T13:56:58,733   copying build/lib/pele_platform/Examples/checker/input_env.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2020-09-22T13:56:58,738   copying build/lib/pele_platform/Examples/checker/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2020-09-22T13:56:58,744   copying build/lib/pele_platform/Examples/checker/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2020-09-22T13:56:58,791   copying build/lib/pele_platform/Examples/checker/input_atom_string.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2020-09-22T13:56:58,796   copying build/lib/pele_platform/Examples/checker/input_template.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/checker
2020-09-22T13:56:58,803   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
2020-09-22T13:56:58,806   copying build/lib/pele_platform/Examples/pca/input_str.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
2020-09-22T13:56:58,812   copying build/lib/pele_platform/Examples/pca/1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
2020-09-22T13:56:58,854   copying build/lib/pele_platform/Examples/pca/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
2020-09-22T13:56:58,859   copying build/lib/pele_platform/Examples/pca/2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
2020-09-22T13:56:58,902   copying build/lib/pele_platform/Examples/pca/3.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
2020-09-22T13:56:58,946   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2020-09-22T13:56:58,949   copying build/lib/pele_platform/Examples/out_in/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2020-09-22T13:56:58,955   copying build/lib/pele_platform/Examples/out_in/input_flag_error.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2020-09-22T13:56:58,960   copying build/lib/pele_platform/Examples/out_in/input_default.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2020-09-22T13:56:58,966   copying build/lib/pele_platform/Examples/out_in/1_3ZON_complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
2020-09-22T13:56:59,007   creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit
2020-09-22T13:56:59,010   copying build/lib/pele_platform/Examples/exit/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit
2020-09-22T13:56:59,016   copying build/lib/pele_platform/Examples/exit/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit
2020-09-22T13:56:59,023   creating build/bdist.linux-armv7l/wheel/pele_platform/Checker
2020-09-22T13:56:59,026   copying build/lib/pele_platform/Checker/valid_flags.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2020-09-22T13:56:59,033   copying build/lib/pele_platform/Checker/executable.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2020-09-22T13:56:59,039   copying build/lib/pele_platform/Checker/python_version.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2020-09-22T13:56:59,044   copying build/lib/pele_platform/Checker/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2020-09-22T13:56:59,049   copying build/lib/pele_platform/Checker/main.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2020-09-22T13:56:59,055   copying build/lib/pele_platform/Checker/environment_variables.py -> build/bdist.linux-armv7l/wheel/pele_platform/Checker
2020-09-22T13:56:59,059   running install_egg_info
2020-09-22T13:56:59,089   Copying pele_platform.egg-info to build/bdist.linux-armv7l/wheel/pele_platform-1.5.1-py3.5.egg-info
2020-09-22T13:56:59,121   running install_scripts
2020-09-22T13:56:59,382   creating build/bdist.linux-armv7l/wheel/pele_platform-1.5.1.dist-info/WHEEL
2020-09-22T13:57:07,326   Building wheel for pele-platform (setup.py): finished with status 'done'
2020-09-22T13:57:07,414   Created wheel for pele-platform: filename=pele_platform-1.5.1-py3-none-any.whl size=5021525 sha256=1e2441185afe5cc09f11dd375ad35a722a8557cfa6d58dafa105b6cc82f8dace
2020-09-22T13:57:07,415   Stored in directory: /tmp/pip-ephem-wheel-cache-s_l30lyl/wheels/ca/c3/3f/87b4c13c363ce7180955cfb32c50dd423b3533b91d6dc82dab
2020-09-22T13:57:07,419 Successfully built pele-platform
2020-09-22T13:57:08,315 Removed build tracker: '/tmp/pip-req-tracker-s7gr2bm6'