2020-09-22T18:22:53,576 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-09-22T18:22:54,308 Created temporary directory: /tmp/pip-ephem-wheel-cache-rnejv93f
2020-09-22T18:22:54,313 Created temporary directory: /tmp/pip-req-tracker-frb_f4ov
2020-09-22T18:22:54,314 Initialized build tracking at /tmp/pip-req-tracker-frb_f4ov
2020-09-22T18:22:54,315 Created build tracker: /tmp/pip-req-tracker-frb_f4ov
2020-09-22T18:22:54,315 Entered build tracker: /tmp/pip-req-tracker-frb_f4ov
2020-09-22T18:22:54,316 Created temporary directory: /tmp/pip-wheel-9firbeal
2020-09-22T18:22:54,337 1 location(s) to search for versions of libis:
2020-09-22T18:22:54,337 * https://pypi.org/simple/libis/
2020-09-22T18:22:54,338 Fetching project page and analyzing links: https://pypi.org/simple/libis/
2020-09-22T18:22:54,340 Getting page https://pypi.org/simple/libis/
2020-09-22T18:22:54,344 Found index url https://pypi.org/simple
2020-09-22T18:22:54,680   Found link https://files.pythonhosted.org/packages/2f/40/aee579bd73e0703cedaf0d5bf59cea397e0164e05951d38fcd00047c20d8/LiBis-0.0.7.tar.gz#sha256=c6fb29106b689d55b8e4898e30faa15a557dc845f9d61e87dd7ee21bbbf0e139 (from https://pypi.org/simple/libis/), version: 0.0.7
2020-09-22T18:22:54,681   Found link https://files.pythonhosted.org/packages/e9/52/90fc43e39b3638ae87bf2068bc3cf67fed53a7616f45337ceb734d1797c1/LiBis-0.0.8.tar.gz#sha256=b03d77fcb28ed7e5d11351b435e25ec4aed52c3b81acbecf1326fe6130120a24 (from https://pypi.org/simple/libis/), version: 0.0.8
2020-09-22T18:22:54,682   Found link https://files.pythonhosted.org/packages/5e/7c/184da0198b3263d9181b12c59aaa3624f4b12346baf6695b339bd227b423/LiBis-0.0.9.tar.gz#sha256=6ce3b5412c2f3412b20932b54d875223c5019ef425312b7075c44f9fb3d30990 (from https://pypi.org/simple/libis/), version: 0.0.9
2020-09-22T18:22:54,683   Found link https://files.pythonhosted.org/packages/53/4d/07050aedb85423878c8ca216171e3ffebc25989527e996c20f55e9116359/LiBis-0.0.10.tar.gz#sha256=2166c1709347e41f2736344817aa12ef3eae3983fc41edc2438d0a04718ea032 (from https://pypi.org/simple/libis/), version: 0.0.10
2020-09-22T18:22:54,684   Found link https://files.pythonhosted.org/packages/b9/e1/c439c70ca5082480c48b91b7bedfd878a186f49566da0e7844d5e22f280c/LiBis-0.0.11.tar.gz#sha256=408b17ee402c443bc2bf89a720bb76703b73b95946311237cf897b28b9ae053e (from https://pypi.org/simple/libis/), version: 0.0.11
2020-09-22T18:22:54,685   Found link https://files.pythonhosted.org/packages/a6/d1/4936a46143eeff03620183d641e5d4ee38bc231deffa49ca0402a3856c7d/LiBis-0.0.12.tar.gz#sha256=c63bd5b867b910c7cad222a3091652bde2a30d8a7b70160ee6c5710bce0e882e (from https://pypi.org/simple/libis/), version: 0.0.12
2020-09-22T18:22:54,686   Found link https://files.pythonhosted.org/packages/17/74/dd40c0864330bbece8c3156cf4eea3e76f570c8c7f62362bb37b1bd1e2a9/LiBis-0.0.13.tar.gz#sha256=08635cc4ce8d326846366bc36bf57db796c3948734daa2a64c93a8fc9fb709b6 (from https://pypi.org/simple/libis/), version: 0.0.13
2020-09-22T18:22:54,687   Found link https://files.pythonhosted.org/packages/8a/63/8a377b0060f81b98e996cdf155a3987c584cc2c5243833a31a4a1b549ddb/LiBis-0.0.14.tar.gz#sha256=42f49234db2524ef6d25cf3b9be693b0738ca6eb515fd1ea7a00a49b13d875f1 (from https://pypi.org/simple/libis/), version: 0.0.14
2020-09-22T18:22:54,688   Found link https://files.pythonhosted.org/packages/4a/8e/70b6ad78a1c95416b40b85246d082ff3527dd3f57e60df42d129207862fd/LiBis-0.0.15.tar.gz#sha256=8d4b12de72bc97855349abf7360dd47922e7dad96c7c3ad86fc0f00a6e13a220 (from https://pypi.org/simple/libis/), version: 0.0.15
2020-09-22T18:22:54,688   Found link https://files.pythonhosted.org/packages/93/3b/039bb14df5da4b584ec70f138138c4389ddcc404d6a6deaedd8110faa106/LiBis-0.1.0.tar.gz#sha256=3c7cd1a8d71c996451be9617d65c605ef2accb95554c87c808367a0a89711b7e (from https://pypi.org/simple/libis/), version: 0.1.0
2020-09-22T18:22:54,689   Found link https://files.pythonhosted.org/packages/80/b7/b092fb99be604e9c781a7b306e9d4c4595f32f97d76ca0d33ff1cf5c0408/LiBis-0.1.1.tar.gz#sha256=78fc80bcf8f7f8333995cf225b19f9ad0814965de6d56fbf9dd37f91e751111d (from https://pypi.org/simple/libis/), version: 0.1.1
2020-09-22T18:22:54,690   Found link https://files.pythonhosted.org/packages/98/97/d9606e110656d0b422de5dccdc2902bbb231b4001bca2bfe54de45a81f34/LiBis-0.1.2.tar.gz#sha256=78431224f720b422d54de8a984c5fe1eb00637ae9278a05c4c32c408ae47ec28 (from https://pypi.org/simple/libis/), version: 0.1.2
2020-09-22T18:22:54,691   Found link https://files.pythonhosted.org/packages/cc/d8/f4c80076939df201bda99c3fdd950ddb23edbc2dfda856a815bfe8e7b09c/LiBis-0.1.3.tar.gz#sha256=ce63bbe88b37ee77b51c7405e3f5332753f0230e26c4c1a9283fc7e0e3a8c667 (from https://pypi.org/simple/libis/), version: 0.1.3
2020-09-22T18:22:54,692   Found link https://files.pythonhosted.org/packages/76/8c/138ad1e19f4f612da8e6f95defad22a53afb2f52adcb6d1cd3ecc12c3719/LiBis-0.1.4.tar.gz#sha256=38f8e5cef6e2d3416523c49b5e24513d7619c0a49b9800523d4a7673c4f4f173 (from https://pypi.org/simple/libis/), version: 0.1.4
2020-09-22T18:22:54,693   Found link https://files.pythonhosted.org/packages/af/6d/bcbaec0c5b95528285f20e3d4f505e1f52badb2c46eac08bbbaf0eddca5b/LiBis-0.1.5.tar.gz#sha256=b55e1fe0628c20acf142e21cfd633d7cf7e9526556a6cc7ca7238bc1256e5112 (from https://pypi.org/simple/libis/), version: 0.1.5
2020-09-22T18:22:54,694   Found link https://files.pythonhosted.org/packages/fd/ea/ce0cb3ff40acf03b41b71a92be496a80e7ba7c3315d53db8d8869190710b/LiBis-0.1.5.1.tar.gz#sha256=4701b4d4dc7f630d3ef311fc6bb65bda16d1baf13ab5c8631a773bbdb4cbacb9 (from https://pypi.org/simple/libis/), version: 0.1.5.1
2020-09-22T18:22:54,695   Found link https://files.pythonhosted.org/packages/1a/6e/b5f817bcb7aff59741b5f09cb5bd864196ce8e60b01b34560f3a18ac3b31/LiBis-0.1.5.2.tar.gz#sha256=5b73fd234fce5060b806095151e0d449b1b4a53bdba1eef7d75827c51eb62194 (from https://pypi.org/simple/libis/), version: 0.1.5.2
2020-09-22T18:22:54,696   Found link https://files.pythonhosted.org/packages/5a/8c/b86f74e232621f0d73b8d60f35e9569bf456a5478ff841006a369a594906/LiBis-0.1.5.3.tar.gz#sha256=54dc36fd97a2905d20a3049e767a869cf538acac06f02ef61a0e8356741f91e1 (from https://pypi.org/simple/libis/), version: 0.1.5.3
2020-09-22T18:22:54,697   Found link https://files.pythonhosted.org/packages/94/9b/99d4fddfa9ebe9837ac106c99242b59175e2bdc70a57b1bf3dc3e7f4b7ea/LiBis-0.1.5.4.tar.gz#sha256=4d6710e4561cdfe4956913462c8358c1d42bb598b974b54fdf2495b139f9a4ce (from https://pypi.org/simple/libis/), version: 0.1.5.4
2020-09-22T18:22:54,714 Given no hashes to check 1 links for project 'libis': discarding no candidates
2020-09-22T18:22:54,716 Using version 0.1.5.4 (newest of versions: 0.1.5.4)
2020-09-22T18:22:54,725 Collecting libis==0.1.5.4
2020-09-22T18:22:54,730   Created temporary directory: /tmp/pip-unpack-fhgrar4q
2020-09-22T18:22:54,983   Downloading LiBis-0.1.5.4.tar.gz (348 kB)
2020-09-22T18:22:55,467   Added libis==0.1.5.4 from https://files.pythonhosted.org/packages/94/9b/99d4fddfa9ebe9837ac106c99242b59175e2bdc70a57b1bf3dc3e7f4b7ea/LiBis-0.1.5.4.tar.gz#sha256=4d6710e4561cdfe4956913462c8358c1d42bb598b974b54fdf2495b139f9a4ce to build tracker '/tmp/pip-req-tracker-frb_f4ov'
2020-09-22T18:22:55,470     Running setup.py (path:/tmp/pip-wheel-9firbeal/libis/setup.py) egg_info for package libis
2020-09-22T18:22:55,472     Created temporary directory: /tmp/pip-pip-egg-info-wpk7ssd2
2020-09-22T18:22:55,473     Running command python setup.py egg_info
2020-09-22T18:22:57,935     running egg_info
2020-09-22T18:22:57,940     creating /tmp/pip-pip-egg-info-wpk7ssd2/LiBis.egg-info
2020-09-22T18:22:57,944     writing /tmp/pip-pip-egg-info-wpk7ssd2/LiBis.egg-info/PKG-INFO
2020-09-22T18:22:57,948     writing dependency_links to /tmp/pip-pip-egg-info-wpk7ssd2/LiBis.egg-info/dependency_links.txt
2020-09-22T18:22:57,951     writing requirements to /tmp/pip-pip-egg-info-wpk7ssd2/LiBis.egg-info/requires.txt
2020-09-22T18:22:57,953     writing top-level names to /tmp/pip-pip-egg-info-wpk7ssd2/LiBis.egg-info/top_level.txt
2020-09-22T18:22:57,957     writing manifest file '/tmp/pip-pip-egg-info-wpk7ssd2/LiBis.egg-info/SOURCES.txt'
2020-09-22T18:22:58,327     reading manifest file '/tmp/pip-pip-egg-info-wpk7ssd2/LiBis.egg-info/SOURCES.txt'
2020-09-22T18:22:58,331     reading manifest template 'MANIFEST.in'
2020-09-22T18:22:58,343     writing manifest file '/tmp/pip-pip-egg-info-wpk7ssd2/LiBis.egg-info/SOURCES.txt'
2020-09-22T18:22:58,482   Source in /tmp/pip-wheel-9firbeal/libis has version 0.1.5.4, which satisfies requirement libis==0.1.5.4 from https://files.pythonhosted.org/packages/94/9b/99d4fddfa9ebe9837ac106c99242b59175e2bdc70a57b1bf3dc3e7f4b7ea/LiBis-0.1.5.4.tar.gz#sha256=4d6710e4561cdfe4956913462c8358c1d42bb598b974b54fdf2495b139f9a4ce
2020-09-22T18:22:58,484   Removed libis==0.1.5.4 from https://files.pythonhosted.org/packages/94/9b/99d4fddfa9ebe9837ac106c99242b59175e2bdc70a57b1bf3dc3e7f4b7ea/LiBis-0.1.5.4.tar.gz#sha256=4d6710e4561cdfe4956913462c8358c1d42bb598b974b54fdf2495b139f9a4ce from build tracker '/tmp/pip-req-tracker-frb_f4ov'
2020-09-22T18:22:58,488 Building wheels for collected packages: libis
2020-09-22T18:22:58,497   Created temporary directory: /tmp/pip-wheel-kaiv1fp_
2020-09-22T18:22:58,498   Building wheel for libis (setup.py): started
2020-09-22T18:22:58,499   Destination directory: /tmp/pip-wheel-kaiv1fp_
2020-09-22T18:22:58,500   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-9firbeal/libis/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-9firbeal/libis/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-kaiv1fp_
2020-09-22T18:23:00,887   running bdist_wheel
2020-09-22T18:23:00,903   running build
2020-09-22T18:23:00,904   running build_py
2020-09-22T18:23:01,247   creating build
2020-09-22T18:23:01,249   creating build/lib
2020-09-22T18:23:01,251   creating build/lib/LiBis
2020-09-22T18:23:01,255   copying LiBis/clipmode.py -> build/lib/LiBis
2020-09-22T18:23:01,263   copying LiBis/pairend.py -> build/lib/LiBis
2020-09-22T18:23:01,269   copying LiBis/mapreduce.py -> build/lib/LiBis
2020-09-22T18:23:01,277   copying LiBis/utils.py -> build/lib/LiBis
2020-09-22T18:23:01,285   copying LiBis/bedtools.py -> build/lib/LiBis
2020-09-22T18:23:01,293   copying LiBis/Format.py -> build/lib/LiBis
2020-09-22T18:23:01,300   copying LiBis/makePair.py -> build/lib/LiBis
2020-09-22T18:23:01,305   copying LiBis/__init__.py -> build/lib/LiBis
2020-09-22T18:23:01,310   copying LiBis/NumExtractor.py -> build/lib/LiBis
2020-09-22T18:23:01,316   copying LiBis/computeProcess.py -> build/lib/LiBis
2020-09-22T18:23:01,322   copying LiBis/fastqc.py -> build/lib/LiBis
2020-09-22T18:23:01,326   copying LiBis/trim.py -> build/lib/LiBis
2020-09-22T18:23:01,331   copying LiBis/bsplot.py -> build/lib/LiBis
2020-09-22T18:23:01,335   copying LiBis/moabs.py -> build/lib/LiBis
2020-09-22T18:23:01,339   running egg_info
2020-09-22T18:23:01,368   writing dependency_links to LiBis.egg-info/dependency_links.txt
2020-09-22T18:23:01,371   writing top-level names to LiBis.egg-info/top_level.txt
2020-09-22T18:23:01,373   writing requirements to LiBis.egg-info/requires.txt
2020-09-22T18:23:01,376   writing LiBis.egg-info/PKG-INFO
2020-09-22T18:23:01,390   reading manifest file 'LiBis.egg-info/SOURCES.txt'
2020-09-22T18:23:01,396   reading manifest template 'MANIFEST.in'
2020-09-22T18:23:01,408   writing manifest file 'LiBis.egg-info/SOURCES.txt'
2020-09-22T18:23:01,415   copying LiBis/result.html -> build/lib/LiBis
2020-09-22T18:23:01,419   creating build/lib/LiBis/chromsize
2020-09-22T18:23:01,421   copying LiBis/chromsize/hg19.chrom.sizes -> build/lib/LiBis/chromsize
2020-09-22T18:23:01,427   copying LiBis/chromsize/hg38.chrom.sizes -> build/lib/LiBis/chromsize
2020-09-22T18:23:01,433   copying LiBis/chromsize/mm10.chrom.sizes -> build/lib/LiBis/chromsize
2020-09-22T18:23:01,437   copying LiBis/chromsize/mm9.chrom.sizes -> build/lib/LiBis/chromsize
2020-09-22T18:23:01,442   creating build/lib/LiBis/jslib
2020-09-22T18:23:01,444   copying LiBis/jslib/datatables.css -> build/lib/LiBis/jslib
2020-09-22T18:23:01,451   copying LiBis/jslib/datatables.js -> build/lib/LiBis/jslib
2020-09-22T18:23:01,522   copying LiBis/jslib/datatables.min.css -> build/lib/LiBis/jslib
2020-09-22T18:23:01,529   copying LiBis/jslib/datatables.min.js -> build/lib/LiBis/jslib
2020-09-22T18:23:01,549   creating build/lib/LiBis/jslib/DataTables
2020-09-22T18:23:01,551   copying LiBis/jslib/DataTables/jquery.dataTables.min.js -> build/lib/LiBis/jslib/DataTables
2020-09-22T18:23:01,565   creating build/lib/LiBis/jslib/jQuery-3.3.1
2020-09-22T18:23:01,567   copying LiBis/jslib/jQuery-3.3.1/jquery-3.3.1.min.js -> build/lib/LiBis/jslib/jQuery-3.3.1
2020-09-22T18:23:01,587   running build_scripts
2020-09-22T18:23:01,589   creating build/scripts-3.5
2020-09-22T18:23:01,593   copying and adjusting bin/LiBis -> build/scripts-3.5
2020-09-22T18:23:01,598   changing mode of build/scripts-3.5/LiBis from 644 to 755
2020-09-22T18:23:01,607   installing to build/bdist.linux-armv7l/wheel
2020-09-22T18:23:01,608   running install
2020-09-22T18:23:01,611   running install_lib
2020-09-22T18:23:01,620   creating build/bdist.linux-armv7l
2020-09-22T18:23:01,622   creating build/bdist.linux-armv7l/wheel
2020-09-22T18:23:01,627   creating build/bdist.linux-armv7l/wheel/LiBis
2020-09-22T18:23:01,630   copying build/lib/LiBis/clipmode.py -> build/bdist.linux-armv7l/wheel/LiBis
2020-09-22T18:23:01,637   copying build/lib/LiBis/pairend.py -> build/bdist.linux-armv7l/wheel/LiBis
2020-09-22T18:23:01,643   copying build/lib/LiBis/result.html -> build/bdist.linux-armv7l/wheel/LiBis
2020-09-22T18:23:01,648   copying build/lib/LiBis/mapreduce.py -> build/bdist.linux-armv7l/wheel/LiBis
2020-09-22T18:23:01,656   copying build/lib/LiBis/utils.py -> build/bdist.linux-armv7l/wheel/LiBis
2020-09-22T18:23:01,663   creating build/bdist.linux-armv7l/wheel/LiBis/chromsize
2020-09-22T18:23:01,666   copying build/lib/LiBis/chromsize/mm9.chrom.sizes -> build/bdist.linux-armv7l/wheel/LiBis/chromsize
2020-09-22T18:23:01,672   copying build/lib/LiBis/chromsize/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/LiBis/chromsize
2020-09-22T18:23:01,680   copying build/lib/LiBis/chromsize/mm10.chrom.sizes -> build/bdist.linux-armv7l/wheel/LiBis/chromsize
2020-09-22T18:23:01,686   copying build/lib/LiBis/chromsize/hg19.chrom.sizes -> build/bdist.linux-armv7l/wheel/LiBis/chromsize
2020-09-22T18:23:01,691   copying build/lib/LiBis/bedtools.py -> build/bdist.linux-armv7l/wheel/LiBis
2020-09-22T18:23:01,695   copying build/lib/LiBis/Format.py -> build/bdist.linux-armv7l/wheel/LiBis
2020-09-22T18:23:01,700   copying build/lib/LiBis/makePair.py -> build/bdist.linux-armv7l/wheel/LiBis
2020-09-22T18:23:01,704   copying build/lib/LiBis/__init__.py -> build/bdist.linux-armv7l/wheel/LiBis
2020-09-22T18:23:01,708   copying build/lib/LiBis/NumExtractor.py -> build/bdist.linux-armv7l/wheel/LiBis
2020-09-22T18:23:01,714   copying build/lib/LiBis/computeProcess.py -> build/bdist.linux-armv7l/wheel/LiBis
2020-09-22T18:23:01,720   copying build/lib/LiBis/fastqc.py -> build/bdist.linux-armv7l/wheel/LiBis
2020-09-22T18:23:01,728   creating build/bdist.linux-armv7l/wheel/LiBis/jslib
2020-09-22T18:23:01,731   copying build/lib/LiBis/jslib/datatables.min.js -> build/bdist.linux-armv7l/wheel/LiBis/jslib
2020-09-22T18:23:01,751   copying build/lib/LiBis/jslib/datatables.min.css -> build/bdist.linux-armv7l/wheel/LiBis/jslib
2020-09-22T18:23:01,757   copying build/lib/LiBis/jslib/datatables.js -> build/bdist.linux-armv7l/wheel/LiBis/jslib
2020-09-22T18:23:01,830   creating build/bdist.linux-armv7l/wheel/LiBis/jslib/DataTables
2020-09-22T18:23:01,832   copying build/lib/LiBis/jslib/DataTables/jquery.dataTables.min.js -> build/bdist.linux-armv7l/wheel/LiBis/jslib/DataTables
2020-09-22T18:23:01,849   creating build/bdist.linux-armv7l/wheel/LiBis/jslib/jQuery-3.3.1
2020-09-22T18:23:01,852   copying build/lib/LiBis/jslib/jQuery-3.3.1/jquery-3.3.1.min.js -> build/bdist.linux-armv7l/wheel/LiBis/jslib/jQuery-3.3.1
2020-09-22T18:23:01,866   copying build/lib/LiBis/jslib/datatables.css -> build/bdist.linux-armv7l/wheel/LiBis/jslib
2020-09-22T18:23:01,872   copying build/lib/LiBis/trim.py -> build/bdist.linux-armv7l/wheel/LiBis
2020-09-22T18:23:01,879   copying build/lib/LiBis/bsplot.py -> build/bdist.linux-armv7l/wheel/LiBis
2020-09-22T18:23:01,885   copying build/lib/LiBis/moabs.py -> build/bdist.linux-armv7l/wheel/LiBis
2020-09-22T18:23:01,894   running install_egg_info
2020-09-22T18:23:01,913   Copying LiBis.egg-info to build/bdist.linux-armv7l/wheel/LiBis-0.1.5.4-py3.5.egg-info
2020-09-22T18:23:01,940   running install_scripts
2020-09-22T18:23:02,078   creating build/bdist.linux-armv7l/wheel/LiBis-0.1.5.4.data
2020-09-22T18:23:02,079   creating build/bdist.linux-armv7l/wheel/LiBis-0.1.5.4.data/scripts
2020-09-22T18:23:02,082   copying build/scripts-3.5/LiBis -> build/bdist.linux-armv7l/wheel/LiBis-0.1.5.4.data/scripts
2020-09-22T18:23:02,087   changing mode of build/bdist.linux-armv7l/wheel/LiBis-0.1.5.4.data/scripts/LiBis to 755
2020-09-22T18:23:02,177   creating build/bdist.linux-armv7l/wheel/LiBis-0.1.5.4.dist-info/WHEEL
2020-09-22T18:23:02,833   Building wheel for libis (setup.py): finished with status 'done'
2020-09-22T18:23:02,843   Created wheel for libis: filename=LiBis-0.1.5.4-py3-none-any.whl size=353272 sha256=9096751ebb4192cfb1b3ebbba386433f3f05b8bcb025822a005bbc762a84a6c0
2020-09-22T18:23:02,844   Stored in directory: /tmp/pip-ephem-wheel-cache-rnejv93f/wheels/51/85/f4/d7a4414994a9c7948a8017aadf2d648506e6fb524d8d973f23
2020-09-22T18:23:02,848 Successfully built libis
2020-09-22T18:23:02,917 Removed build tracker: '/tmp/pip-req-tracker-frb_f4ov'