2020-09-28T12:41:36,333 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-09-28T12:41:37,013 Created temporary directory: /tmp/pip-ephem-wheel-cache-b97jksj2
2020-09-28T12:41:37,018 Created temporary directory: /tmp/pip-req-tracker-t6x65u6g
2020-09-28T12:41:37,019 Initialized build tracking at /tmp/pip-req-tracker-t6x65u6g
2020-09-28T12:41:37,019 Created build tracker: /tmp/pip-req-tracker-t6x65u6g
2020-09-28T12:41:37,019 Entered build tracker: /tmp/pip-req-tracker-t6x65u6g
2020-09-28T12:41:37,021 Created temporary directory: /tmp/pip-wheel-gn0sy56e
2020-09-28T12:41:37,040 Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com
2020-09-28T12:41:37,043 2 location(s) to search for versions of adaptivepele:
2020-09-28T12:41:37,043 * https://pypi.org/simple/adaptivepele/
2020-09-28T12:41:37,043 * https://pypi.ngc.nvidia.com/adaptivepele/
2020-09-28T12:41:37,043 Fetching project page and analyzing links: https://pypi.org/simple/adaptivepele/
2020-09-28T12:41:37,045 Getting page https://pypi.org/simple/adaptivepele/
2020-09-28T12:41:37,050 Found index url https://pypi.org/simple
2020-09-28T12:41:37,369   Found link https://files.pythonhosted.org/packages/33/ee/476a691d254663e61362e5c2754180ff0b92980e6db1afc829265f001706/AdaptivePELE-1.5.1.tar.gz#sha256=5f96081e47a08fa4040ba21a477ba77d590f7feba4980aef9468305fe9f5f282 (from https://pypi.org/simple/adaptivepele/), version: 1.5.1
2020-09-28T12:41:37,370   Found link https://files.pythonhosted.org/packages/d9/82/be65cbae39642401f6e6923e5511fd466d107920ee9673bb84581a243a4e/AdaptivePELE-1.5.2.tar.gz#sha256=7df75c5c57821492d1ba86e44d41b65e6a9105afe6048e85e993741579683848 (from https://pypi.org/simple/adaptivepele/), version: 1.5.2
2020-09-28T12:41:37,371   Found link https://files.pythonhosted.org/packages/48/3b/f12bfdcfd7f0fdcb2f58d659ff94c26666767eec4ca8454750a3241c395e/AdaptivePELE-1.6.tar.gz#sha256=afc51a35222361e6c0caf880e1d52e91b5658dbe4740f82a3460a97ebaa48bf5 (from https://pypi.org/simple/adaptivepele/), version: 1.6
2020-09-28T12:41:37,371   Found link https://files.pythonhosted.org/packages/d0/1b/f731952d133f4a684ae4376f67513af80d1f759b9ef4d6137767e0fc8ed9/AdaptivePELE-1.6.2.tar.gz#sha256=01891c877f6615a876c61c6bf1d68930d4af63750eb3f1a4e7e23ff0f962bbd5 (from https://pypi.org/simple/adaptivepele/), version: 1.6.2
2020-09-28T12:41:37,372   Found link https://files.pythonhosted.org/packages/25/2c/65b787dc210294855b8f27abeb4a7761f25fce34e0b8bfd56779c679440d/AdaptivePELE-1.6.3.tar.gz#sha256=34be232bc04bde2dcc4ebd900dd9c71e6f25eed93b7c875463c07d3dd8ce1aa9 (from https://pypi.org/simple/adaptivepele/), version: 1.6.3
2020-09-28T12:41:37,373 Fetching project page and analyzing links: https://pypi.ngc.nvidia.com/adaptivepele/
2020-09-28T12:41:37,373 Getting page https://pypi.ngc.nvidia.com/adaptivepele/
2020-09-28T12:41:37,376 Found index url https://pypi.ngc.nvidia.com
2020-09-28T12:41:38,419 Could not fetch URL https://pypi.ngc.nvidia.com/adaptivepele/: 404 Client Error: Not Found for url: https://developer.download.nvidia.com/compute/redist/adaptivepele/ - skipping
2020-09-28T12:41:38,439 Given no hashes to check 1 links for project 'adaptivepele': discarding no candidates
2020-09-28T12:41:38,440 Using version 1.6.3 (newest of versions: 1.6.3)
2020-09-28T12:41:38,449 Collecting adaptivepele==1.6.3
2020-09-28T12:41:38,454   Created temporary directory: /tmp/pip-unpack-magq4k55
2020-09-28T12:41:39,394   Downloading AdaptivePELE-1.6.3.tar.gz (7.3 MB)
2020-09-28T12:41:45,822   Added adaptivepele==1.6.3 from https://files.pythonhosted.org/packages/25/2c/65b787dc210294855b8f27abeb4a7761f25fce34e0b8bfd56779c679440d/AdaptivePELE-1.6.3.tar.gz#sha256=34be232bc04bde2dcc4ebd900dd9c71e6f25eed93b7c875463c07d3dd8ce1aa9 to build tracker '/tmp/pip-req-tracker-t6x65u6g'
2020-09-28T12:41:45,825     Running setup.py (path:/tmp/pip-wheel-gn0sy56e/adaptivepele/setup.py) egg_info for package adaptivepele
2020-09-28T12:41:45,826     Created temporary directory: /tmp/pip-pip-egg-info-z_eu0f6y
2020-09-28T12:41:45,827     Running command python setup.py egg_info
2020-09-28T12:41:49,357     running egg_info
2020-09-28T12:41:49,362     creating /tmp/pip-pip-egg-info-z_eu0f6y/AdaptivePELE.egg-info
2020-09-28T12:41:49,364     writing dependency_links to /tmp/pip-pip-egg-info-z_eu0f6y/AdaptivePELE.egg-info/dependency_links.txt
2020-09-28T12:41:49,368     writing top-level names to /tmp/pip-pip-egg-info-z_eu0f6y/AdaptivePELE.egg-info/top_level.txt
2020-09-28T12:41:49,372     writing /tmp/pip-pip-egg-info-z_eu0f6y/AdaptivePELE.egg-info/PKG-INFO
2020-09-28T12:41:49,377     writing requirements to /tmp/pip-pip-egg-info-z_eu0f6y/AdaptivePELE.egg-info/requires.txt
2020-09-28T12:41:49,382     writing manifest file '/tmp/pip-pip-egg-info-z_eu0f6y/AdaptivePELE.egg-info/SOURCES.txt'
2020-09-28T12:41:49,749     reading manifest file '/tmp/pip-pip-egg-info-z_eu0f6y/AdaptivePELE.egg-info/SOURCES.txt'
2020-09-28T12:41:49,752     reading manifest template 'MANIFEST.in'
2020-09-28T12:41:49,869     writing manifest file '/tmp/pip-pip-egg-info-z_eu0f6y/AdaptivePELE.egg-info/SOURCES.txt'
2020-09-28T12:41:50,110   Source in /tmp/pip-wheel-gn0sy56e/adaptivepele has version 1.6.3, which satisfies requirement adaptivepele==1.6.3 from https://files.pythonhosted.org/packages/25/2c/65b787dc210294855b8f27abeb4a7761f25fce34e0b8bfd56779c679440d/AdaptivePELE-1.6.3.tar.gz#sha256=34be232bc04bde2dcc4ebd900dd9c71e6f25eed93b7c875463c07d3dd8ce1aa9
2020-09-28T12:41:50,112   Removed adaptivepele==1.6.3 from https://files.pythonhosted.org/packages/25/2c/65b787dc210294855b8f27abeb4a7761f25fce34e0b8bfd56779c679440d/AdaptivePELE-1.6.3.tar.gz#sha256=34be232bc04bde2dcc4ebd900dd9c71e6f25eed93b7c875463c07d3dd8ce1aa9 from build tracker '/tmp/pip-req-tracker-t6x65u6g'
2020-09-28T12:41:50,118 Building wheels for collected packages: adaptivepele
2020-09-28T12:41:50,127   Created temporary directory: /tmp/pip-wheel-klv7k41j
2020-09-28T12:41:50,128   Building wheel for adaptivepele (setup.py): started
2020-09-28T12:41:50,128   Destination directory: /tmp/pip-wheel-klv7k41j
2020-09-28T12:41:50,129   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-gn0sy56e/adaptivepele/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-gn0sy56e/adaptivepele/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-klv7k41j
2020-09-28T12:41:53,517   running bdist_wheel
2020-09-28T12:41:53,528   running build
2020-09-28T12:41:53,529   running build_py
2020-09-28T12:41:53,850   creating build
2020-09-28T12:41:53,851   creating build/lib.linux-armv7l-3.5
2020-09-28T12:41:53,852   creating build/lib.linux-armv7l-3.5/AdaptivePELE
2020-09-28T12:41:53,855   copying AdaptivePELE/runAllTests.py -> build/lib.linux-armv7l-3.5/AdaptivePELE
2020-09-28T12:41:53,860   copying AdaptivePELE/adaptiveSampling.py -> build/lib.linux-armv7l-3.5/AdaptivePELE
2020-09-28T12:41:53,868   copying AdaptivePELE/makeRelease.py -> build/lib.linux-armv7l-3.5/AdaptivePELE
2020-09-28T12:41:53,872   copying AdaptivePELE/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE
2020-09-28T12:41:53,875   copying AdaptivePELE/automateRoundsAdaptive.py -> build/lib.linux-armv7l-3.5/AdaptivePELE
2020-09-28T12:41:53,883   creating build/lib.linux-armv7l-3.5/AdaptivePELE/spawning
2020-09-28T12:41:53,886   copying AdaptivePELE/spawning/spawningTypes.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/spawning
2020-09-28T12:41:53,892   copying AdaptivePELE/spawning/densitycalculator.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/spawning
2020-09-28T12:41:53,899   copying AdaptivePELE/spawning/spawning.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/spawning
2020-09-28T12:41:53,909   copying AdaptivePELE/spawning/densitycalculatortypes.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/spawning
2020-09-28T12:41:53,913   copying AdaptivePELE/spawning/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/spawning
2020-09-28T12:41:53,918   creating build/lib.linux-armv7l-3.5/AdaptivePELE/clustering
2020-09-28T12:41:53,921   copying AdaptivePELE/clustering/clustering.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/clustering
2020-09-28T12:41:53,936   copying AdaptivePELE/clustering/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/clustering
2020-09-28T12:41:53,940   copying AdaptivePELE/clustering/thresholdcalculatortypes.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/clustering
2020-09-28T12:41:53,944   copying AdaptivePELE/clustering/thresholdcalculator.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/clustering
2020-09-28T12:41:53,949   copying AdaptivePELE/clustering/clusteringTypes.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/clustering
2020-09-28T12:41:53,958   creating build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:53,960   copying AdaptivePELE/analysis/networkCM.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:53,965   copying AdaptivePELE/analysis/standarize_MD_energies.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:53,969   copying AdaptivePELE/analysis/analyseClustering.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:53,974   copying AdaptivePELE/analysis/clusters_lagtime_grid.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:53,980   copying AdaptivePELE/analysis/analysis_utils.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:53,985   copying AdaptivePELE/analysis/analyse.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:53,991   copying AdaptivePELE/analysis/backtrackAdaptiveTrajectory.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:53,997   copying AdaptivePELE/analysis/selectOnPlot.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,004   copying AdaptivePELE/analysis/splitTrajectory.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,008   copying AdaptivePELE/analysis/convertTrajectory.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,012   copying AdaptivePELE/analysis/cluster.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,018   copying AdaptivePELE/analysis/crossValidationClustering.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,023   copying AdaptivePELE/analysis/histCM.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,029   copying AdaptivePELE/analysis/plot3DNetwork.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,035   copying AdaptivePELE/analysis/extract_ligand_traj.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,040   copying AdaptivePELE/analysis/pathwayRMSD.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,044   copying AdaptivePELE/analysis/clusterAdaptiveRun.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,050   copying AdaptivePELE/analysis/foldersFirstBindingEvent.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,054   copying AdaptivePELE/analysis/compareClustering.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,059   copying AdaptivePELE/analysis/simulationToCsv.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,064   copying AdaptivePELE/analysis/plotSpawningClusters.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,070   copying AdaptivePELE/analysis/writeClusteringStructures.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,076   copying AdaptivePELE/analysis/calculateSASAvalues.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,082   copying AdaptivePELE/analysis/count_clusters.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,087   copying AdaptivePELE/analysis/filter_by_radius.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,092   copying AdaptivePELE/analysis/interactivePlot.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,099   copying AdaptivePELE/analysis/plotRMSF.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,104   copying AdaptivePELE/analysis/generateBox.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,112   copying AdaptivePELE/analysis/bestStructs.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,119   copying AdaptivePELE/analysis/numberOfClusters.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,126   copying AdaptivePELE/analysis/findfirstbindingevent.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,131   copying AdaptivePELE/analysis/writeTrajToSnapshot.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,137   copying AdaptivePELE/analysis/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,141   copying AdaptivePELE/analysis/plotAdaptive.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,147   copying AdaptivePELE/analysis/writeNetworkFiles.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,151   copying AdaptivePELE/analysis/autoCorrelation.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,157   copying AdaptivePELE/analysis/simple_postprocessing.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,161   copying AdaptivePELE/analysis/reportSimulation.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,166   copying AdaptivePELE/analysis/trajectory_processing.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,173   copying AdaptivePELE/analysis/makePNGs.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,179   copying AdaptivePELE/analysis/unbinding.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,184   copying AdaptivePELE/analysis/dehidratate_and_align.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,188   copying AdaptivePELE/analysis/calculateDistances.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,193   copying AdaptivePELE/analysis/addRejectedSteps.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,197   copying AdaptivePELE/analysis/correctRMSD.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,202   copying AdaptivePELE/analysis/identifyClusterSnapshot.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2020-09-28T12:41:54,210   creating build/lib.linux-armv7l-3.5/AdaptivePELE/validator
2020-09-28T12:41:54,213   copying AdaptivePELE/validator/controlFileValidator.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/validator
2020-09-28T12:41:54,220   copying AdaptivePELE/validator/validatorBlockNames.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/validator
2020-09-28T12:41:54,226   copying AdaptivePELE/validator/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/validator
2020-09-28T12:41:54,232   creating build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2020-09-28T12:41:54,234   copying AdaptivePELE/freeEnergies/writeExtractedCoordsAsPDB.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2020-09-28T12:41:54,238   copying AdaptivePELE/freeEnergies/computeDGGrid.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2020-09-28T12:41:54,243   copying AdaptivePELE/freeEnergies/cluster.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2020-09-28T12:41:54,249   copying AdaptivePELE/freeEnergies/prepareMSMFolders.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2020-09-28T12:41:54,255   copying AdaptivePELE/freeEnergies/extractCoords.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2020-09-28T12:41:54,264   copying AdaptivePELE/freeEnergies/runMarkovChainModel.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2020-09-28T12:41:54,270   copying AdaptivePELE/freeEnergies/calculateAdaptiveDGiterations.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2020-09-28T12:41:54,276   copying AdaptivePELE/freeEnergies/checkDetailedBalance.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2020-09-28T12:41:54,283   copying AdaptivePELE/freeEnergies/computeDeltaG.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2020-09-28T12:41:54,289   copying AdaptivePELE/freeEnergies/estimateDG.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2020-09-28T12:41:54,296   copying AdaptivePELE/freeEnergies/estimateDGAdaptive.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2020-09-28T12:41:54,302   copying AdaptivePELE/freeEnergies/calculateDGiterations.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2020-09-28T12:41:54,308   copying AdaptivePELE/freeEnergies/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2020-09-28T12:41:54,311   copying AdaptivePELE/freeEnergies/utilitiesFreeEnergies.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2020-09-28T12:41:54,315   copying AdaptivePELE/freeEnergies/getRepresentativeStructures.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2020-09-28T12:41:54,319   copying AdaptivePELE/freeEnergies/extendTrajectories.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2020-09-28T12:41:54,324   copying AdaptivePELE/freeEnergies/ownBuildMSM.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2020-09-28T12:41:54,329   copying AdaptivePELE/freeEnergies/estimate.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2020-09-28T12:41:54,338   creating build/lib.linux-armv7l-3.5/AdaptivePELE/utilities
2020-09-28T12:41:54,341   copying AdaptivePELE/utilities/PDBLoader.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/utilities
2020-09-28T12:41:54,349   copying AdaptivePELE/utilities/generate_topology_object.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/utilities
2020-09-28T12:41:54,353   copying AdaptivePELE/utilities/synchronization.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/utilities
2020-09-28T12:41:54,358   copying AdaptivePELE/utilities/clusteringUtilities.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/utilities
2020-09-28T12:41:54,362   copying AdaptivePELE/utilities/utilities.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/utilities
2020-09-28T12:41:54,371   copying AdaptivePELE/utilities/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/utilities
2020-09-28T12:41:54,375   copying AdaptivePELE/utilities/conda_deployment.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/utilities
2020-09-28T12:41:54,383   creating build/lib.linux-armv7l-3.5/AdaptivePELE/simulation
2020-09-28T12:41:54,385   copying AdaptivePELE/simulation/simulationTypes.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/simulation
2020-09-28T12:41:54,390   copying AdaptivePELE/simulation/simulationrunner.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/simulation
2020-09-28T12:41:54,402   copying AdaptivePELE/simulation/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/simulation
2020-09-28T12:41:54,406   copying AdaptivePELE/simulation/openmm_simulations.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/simulation
2020-09-28T12:41:54,418   creating build/lib.linux-armv7l-3.5/AdaptivePELE/tests
2020-09-28T12:41:54,421   copying AdaptivePELE/tests/testAdaptiveSampling.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
2020-09-28T12:41:54,429   copying AdaptivePELE/tests/testDensityCalculator.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
2020-09-28T12:41:54,434   copying AdaptivePELE/tests/testThresholdcalculator.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
2020-09-28T12:41:54,438   copying AdaptivePELE/tests/testSpawning.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
2020-09-28T12:41:54,444   copying AdaptivePELE/tests/testMD_CUDA.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
2020-09-28T12:41:54,448   copying AdaptivePELE/tests/testAtomset.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
2020-09-28T12:41:54,457   copying AdaptivePELE/tests/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
2020-09-28T12:41:54,462   copying AdaptivePELE/tests/testClustering.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
2020-09-28T12:41:54,468   copying AdaptivePELE/tests/testReporter.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
2020-09-28T12:41:54,474   copying AdaptivePELE/tests/testMD.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
2020-09-28T12:41:54,482   creating build/lib.linux-armv7l-3.5/AdaptivePELE/atomset
2020-09-28T12:41:54,484   copying AdaptivePELE/atomset/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/atomset
2020-09-28T12:41:54,490   copying AdaptivePELE/atomset/setup.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/atomset
2020-09-28T12:41:54,495   creating build/lib.linux-armv7l-3.5/AdaptivePELE/constants
2020-09-28T12:41:54,497   copying AdaptivePELE/constants/constants.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/constants
2020-09-28T12:41:54,503   copying AdaptivePELE/constants/blockNames.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/constants
2020-09-28T12:41:54,508   copying AdaptivePELE/constants/symmetries.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/constants
2020-09-28T12:41:54,513   copying AdaptivePELE/constants/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/constants
2020-09-28T12:41:54,550   running build_ext
2020-09-28T12:41:54,561   cythoning AdaptivePELE/atomset/atomset.pyx to AdaptivePELE/atomset/atomset.c
2020-09-28T12:41:56,211   /usr/local/lib/python3.5/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-gn0sy56e/adaptivepele/AdaptivePELE/atomset/atomset.pxd
2020-09-28T12:41:56,212     tree = Parsing.p_module(s, pxd, full_module_name)
2020-09-28T12:42:03,645   skipping 'AdaptivePELE/atomset/SymmetryContactMapEvaluator.c' Cython extension (up-to-date)
2020-09-28T12:42:03,648   skipping 'AdaptivePELE/atomset/RMSDCalculator.c' Cython extension (up-to-date)
2020-09-28T12:42:03,650   skipping 'AdaptivePELE/freeEnergies/utils.c' Cython extension (up-to-date)
2020-09-28T12:42:03,652   building 'AdaptivePELE.atomset.atomset' extension
2020-09-28T12:42:03,654   creating build/temp.linux-armv7l-3.5
2020-09-28T12:42:03,655   creating build/temp.linux-armv7l-3.5/AdaptivePELE
2020-09-28T12:42:03,657   creating build/temp.linux-armv7l-3.5/AdaptivePELE/atomset
2020-09-28T12:42:03,659   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/atomset -I/usr/local/lib/python3.5/dist-packages/numpy/core/include -I/usr/include/python3.5m -c AdaptivePELE/atomset/atomset.c -o build/temp.linux-armv7l-3.5/AdaptivePELE/atomset/atomset.o
2020-09-28T12:42:04,355   In file included from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832:0,
2020-09-28T12:42:04,356                    from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2020-09-28T12:42:04,357                    from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2020-09-28T12:42:04,357                    from AdaptivePELE/atomset/atomset.c:610:
2020-09-28T12:42:04,358   /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2020-09-28T12:42:04,359    #warning "Using deprecated NumPy API, disable it with " \
2020-09-28T12:42:04,359     ^~~~~~~
2020-09-28T12:43:05,852   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/AdaptivePELE/atomset/atomset.o -o build/lib.linux-armv7l-3.5/AdaptivePELE/atomset/atomset.cpython-35m-arm-linux-gnueabihf.so
2020-09-28T12:43:06,323   building 'AdaptivePELE.atomset.SymmetryContactMapEvaluator' extension
2020-09-28T12:43:06,324   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/atomset -I/usr/local/lib/python3.5/dist-packages/numpy/core/include -I/usr/include/python3.5m -c AdaptivePELE/atomset/SymmetryContactMapEvaluator.c -o build/temp.linux-armv7l-3.5/AdaptivePELE/atomset/SymmetryContactMapEvaluator.o
2020-09-28T12:43:06,958   In file included from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832:0,
2020-09-28T12:43:06,959                    from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2020-09-28T12:43:06,960                    from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2020-09-28T12:43:06,960                    from AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:610:
2020-09-28T12:43:06,961   /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2020-09-28T12:43:06,961    #warning "Using deprecated NumPy API, disable it with " \
2020-09-28T12:43:06,962     ^~~~~~~
2020-09-28T12:43:31,532   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/AdaptivePELE/atomset/SymmetryContactMapEvaluator.o -o build/lib.linux-armv7l-3.5/AdaptivePELE/atomset/SymmetryContactMapEvaluator.cpython-35m-arm-linux-gnueabihf.so
2020-09-28T12:43:31,817   building 'AdaptivePELE.atomset.RMSDCalculator' extension
2020-09-28T12:43:31,818   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/atomset -I/usr/local/lib/python3.5/dist-packages/numpy/core/include -I/usr/include/python3.5m -c AdaptivePELE/atomset/RMSDCalculator.c -o build/temp.linux-armv7l-3.5/AdaptivePELE/atomset/RMSDCalculator.o
2020-09-28T12:43:32,403   In file included from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832:0,
2020-09-28T12:43:32,404                    from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2020-09-28T12:43:32,404                    from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2020-09-28T12:43:32,405                    from AdaptivePELE/atomset/RMSDCalculator.c:610:
2020-09-28T12:43:32,405   /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2020-09-28T12:43:32,405    #warning "Using deprecated NumPy API, disable it with " \
2020-09-28T12:43:32,406     ^~~~~~~
2020-09-28T12:43:46,863   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/AdaptivePELE/atomset/RMSDCalculator.o -o build/lib.linux-armv7l-3.5/AdaptivePELE/atomset/RMSDCalculator.cpython-35m-arm-linux-gnueabihf.so
2020-09-28T12:43:47,118   building 'AdaptivePELE.freeEnergies.utils' extension
2020-09-28T12:43:47,120   creating build/temp.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2020-09-28T12:43:47,122   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/freeEnergies -I/usr/local/lib/python3.5/dist-packages/numpy/core/include -I/usr/include/python3.5m -c AdaptivePELE/freeEnergies/utils.c -o build/temp.linux-armv7l-3.5/AdaptivePELE/freeEnergies/utils.o
2020-09-28T12:43:47,731   In file included from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832:0,
2020-09-28T12:43:47,732                    from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2020-09-28T12:43:47,732                    from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2020-09-28T12:43:47,733                    from AdaptivePELE/freeEnergies/utils.c:610:
2020-09-28T12:43:47,734   /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2020-09-28T12:43:47,734    #warning "Using deprecated NumPy API, disable it with " \
2020-09-28T12:43:47,734     ^~~~~~~
2020-09-28T12:44:17,510   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-U0sDci/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/AdaptivePELE/freeEnergies/utils.o -o build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/utils.cpython-35m-arm-linux-gnueabihf.so
2020-09-28T12:44:17,851   installing to build/bdist.linux-armv7l/wheel
2020-09-28T12:44:17,853   running install
2020-09-28T12:44:17,856   running install_lib
2020-09-28T12:44:17,866   creating build/bdist.linux-armv7l
2020-09-28T12:44:17,867   creating build/bdist.linux-armv7l/wheel
2020-09-28T12:44:17,871   creating build/bdist.linux-armv7l/wheel/AdaptivePELE
2020-09-28T12:44:17,875   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2020-09-28T12:44:17,877   copying build/lib.linux-armv7l-3.5/AdaptivePELE/spawning/spawningTypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2020-09-28T12:44:17,882   copying build/lib.linux-armv7l-3.5/AdaptivePELE/spawning/densitycalculator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2020-09-28T12:44:17,888   copying build/lib.linux-armv7l-3.5/AdaptivePELE/spawning/spawning.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2020-09-28T12:44:17,899   copying build/lib.linux-armv7l-3.5/AdaptivePELE/spawning/densitycalculatortypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2020-09-28T12:44:17,904   copying build/lib.linux-armv7l-3.5/AdaptivePELE/spawning/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2020-09-28T12:44:17,911   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2020-09-28T12:44:17,913   copying build/lib.linux-armv7l-3.5/AdaptivePELE/clustering/clustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2020-09-28T12:44:17,928   copying build/lib.linux-armv7l-3.5/AdaptivePELE/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2020-09-28T12:44:17,932   copying build/lib.linux-armv7l-3.5/AdaptivePELE/clustering/thresholdcalculatortypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2020-09-28T12:44:17,936   copying build/lib.linux-armv7l-3.5/AdaptivePELE/clustering/thresholdcalculator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2020-09-28T12:44:17,942   copying build/lib.linux-armv7l-3.5/AdaptivePELE/clustering/clusteringTypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2020-09-28T12:44:17,951   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:17,953   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/networkCM.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:17,960   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/standarize_MD_energies.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:17,965   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/analyseClustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:17,971   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/clusters_lagtime_grid.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:17,976   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/analysis_utils.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:17,981   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/analyse.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:17,987   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/backtrackAdaptiveTrajectory.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:17,994   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/selectOnPlot.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,001   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/splitTrajectory.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,007   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/convertTrajectory.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,013   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/cluster.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,021   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/crossValidationClustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,027   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/histCM.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,033   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/plot3DNetwork.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,039   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/extract_ligand_traj.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,044   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/pathwayRMSD.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,049   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/clusterAdaptiveRun.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,055   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/foldersFirstBindingEvent.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,059   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/compareClustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,065   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/simulationToCsv.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,071   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/plotSpawningClusters.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,077   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/writeClusteringStructures.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,083   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/calculateSASAvalues.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,089   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/count_clusters.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,094   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/filter_by_radius.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,099   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/interactivePlot.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,107   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/plotRMSF.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,114   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/generateBox.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,121   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/bestStructs.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,128   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/numberOfClusters.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,136   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/findfirstbindingevent.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,142   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/writeTrajToSnapshot.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,147   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,152   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/plotAdaptive.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,160   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/writeNetworkFiles.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,166   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/autoCorrelation.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,172   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/simple_postprocessing.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,176   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/reportSimulation.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,181   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/trajectory_processing.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,187   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/makePNGs.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,193   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/unbinding.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,199   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/dehidratate_and_align.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,205   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/calculateDistances.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,211   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/addRejectedSteps.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,215   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/correctRMSD.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,220   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/identifyClusterSnapshot.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2020-09-28T12:44:18,225   copying build/lib.linux-armv7l-3.5/AdaptivePELE/runAllTests.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
2020-09-28T12:44:18,233   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/validator
2020-09-28T12:44:18,236   copying build/lib.linux-armv7l-3.5/AdaptivePELE/validator/controlFileValidator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/validator
2020-09-28T12:44:18,243   copying build/lib.linux-armv7l-3.5/AdaptivePELE/validator/validatorBlockNames.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/validator
2020-09-28T12:44:18,250   copying build/lib.linux-armv7l-3.5/AdaptivePELE/validator/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/validator
2020-09-28T12:44:18,258   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2020-09-28T12:44:18,260   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/writeExtractedCoordsAsPDB.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2020-09-28T12:44:18,267   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/computeDGGrid.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2020-09-28T12:44:18,274   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/cluster.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2020-09-28T12:44:18,280   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/prepareMSMFolders.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2020-09-28T12:44:18,286   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/extractCoords.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2020-09-28T12:44:18,296   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/runMarkovChainModel.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2020-09-28T12:44:18,303   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/calculateAdaptiveDGiterations.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2020-09-28T12:44:18,309   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/checkDetailedBalance.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2020-09-28T12:44:18,314   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/computeDeltaG.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2020-09-28T12:44:18,320   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/estimateDG.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2020-09-28T12:44:18,325   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/estimateDGAdaptive.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2020-09-28T12:44:18,331   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/calculateDGiterations.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2020-09-28T12:44:18,338   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2020-09-28T12:44:18,342   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/utilitiesFreeEnergies.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2020-09-28T12:44:18,348   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/getRepresentativeStructures.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2020-09-28T12:44:18,354   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/extendTrajectories.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2020-09-28T12:44:18,361   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/ownBuildMSM.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2020-09-28T12:44:18,367   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/estimate.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2020-09-28T12:44:18,373   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/utils.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2020-09-28T12:44:18,446   copying build/lib.linux-armv7l-3.5/AdaptivePELE/adaptiveSampling.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
2020-09-28T12:44:18,459   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2020-09-28T12:44:18,461   copying build/lib.linux-armv7l-3.5/AdaptivePELE/utilities/PDBLoader.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2020-09-28T12:44:18,471   copying build/lib.linux-armv7l-3.5/AdaptivePELE/utilities/generate_topology_object.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2020-09-28T12:44:18,475   copying build/lib.linux-armv7l-3.5/AdaptivePELE/utilities/synchronization.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2020-09-28T12:44:18,481   copying build/lib.linux-armv7l-3.5/AdaptivePELE/utilities/clusteringUtilities.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2020-09-28T12:44:18,485   copying build/lib.linux-armv7l-3.5/AdaptivePELE/utilities/utilities.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2020-09-28T12:44:18,494   copying build/lib.linux-armv7l-3.5/AdaptivePELE/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2020-09-28T12:44:18,499   copying build/lib.linux-armv7l-3.5/AdaptivePELE/utilities/conda_deployment.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2020-09-28T12:44:18,506   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
2020-09-28T12:44:18,509   copying build/lib.linux-armv7l-3.5/AdaptivePELE/simulation/simulationTypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
2020-09-28T12:44:18,514   copying build/lib.linux-armv7l-3.5/AdaptivePELE/simulation/simulationrunner.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
2020-09-28T12:44:18,527   copying build/lib.linux-armv7l-3.5/AdaptivePELE/simulation/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
2020-09-28T12:44:18,530   copying build/lib.linux-armv7l-3.5/AdaptivePELE/simulation/openmm_simulations.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
2020-09-28T12:44:18,543   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2020-09-28T12:44:18,546   copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testAdaptiveSampling.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2020-09-28T12:44:18,554   copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testDensityCalculator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2020-09-28T12:44:18,561   copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testThresholdcalculator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2020-09-28T12:44:18,566   copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testSpawning.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2020-09-28T12:44:18,573   copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testMD_CUDA.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2020-09-28T12:44:18,578   copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testAtomset.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2020-09-28T12:44:18,585   copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2020-09-28T12:44:18,589   copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testClustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2020-09-28T12:44:18,595   copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testReporter.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2020-09-28T12:44:18,601   copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testMD.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2020-09-28T12:44:18,611   copying build/lib.linux-armv7l-3.5/AdaptivePELE/makeRelease.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
2020-09-28T12:44:18,617   copying build/lib.linux-armv7l-3.5/AdaptivePELE/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
2020-09-28T12:44:18,624   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2020-09-28T12:44:18,627   copying build/lib.linux-armv7l-3.5/AdaptivePELE/atomset/SymmetryContactMapEvaluator.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2020-09-28T12:44:18,689   copying build/lib.linux-armv7l-3.5/AdaptivePELE/atomset/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2020-09-28T12:44:18,692   copying build/lib.linux-armv7l-3.5/AdaptivePELE/atomset/setup.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2020-09-28T12:44:18,697   copying build/lib.linux-armv7l-3.5/AdaptivePELE/atomset/RMSDCalculator.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2020-09-28T12:44:18,734   copying build/lib.linux-armv7l-3.5/AdaptivePELE/atomset/atomset.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2020-09-28T12:44:18,877   copying build/lib.linux-armv7l-3.5/AdaptivePELE/automateRoundsAdaptive.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
2020-09-28T12:44:18,884   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2020-09-28T12:44:18,887   copying build/lib.linux-armv7l-3.5/AdaptivePELE/constants/constants.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2020-09-28T12:44:18,894   copying build/lib.linux-armv7l-3.5/AdaptivePELE/constants/blockNames.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2020-09-28T12:44:18,900   copying build/lib.linux-armv7l-3.5/AdaptivePELE/constants/symmetries.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2020-09-28T12:44:18,904   copying build/lib.linux-armv7l-3.5/AdaptivePELE/constants/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2020-09-28T12:44:18,907   running install_egg_info
2020-09-28T12:44:18,951   running egg_info
2020-09-28T12:44:18,954   writing top-level names to AdaptivePELE.egg-info/top_level.txt
2020-09-28T12:44:18,956   writing AdaptivePELE.egg-info/PKG-INFO
2020-09-28T12:44:18,962   writing dependency_links to AdaptivePELE.egg-info/dependency_links.txt
2020-09-28T12:44:18,964   writing requirements to AdaptivePELE.egg-info/requires.txt
2020-09-28T12:44:19,052   reading manifest file 'AdaptivePELE.egg-info/SOURCES.txt'
2020-09-28T12:44:19,075   reading manifest template 'MANIFEST.in'
2020-09-28T12:44:19,219   writing manifest file 'AdaptivePELE.egg-info/SOURCES.txt'
2020-09-28T12:44:19,223   Copying AdaptivePELE.egg-info to build/bdist.linux-armv7l/wheel/AdaptivePELE-1.6.3-py3.5.egg-info
2020-09-28T12:44:19,250   running install_scripts
2020-09-28T12:44:19,378   creating build/bdist.linux-armv7l/wheel/AdaptivePELE-1.6.3.dist-info/WHEEL
2020-09-28T12:44:21,893   Building wheel for adaptivepele (setup.py): finished with status 'done'
2020-09-28T12:44:21,923   Created wheel for adaptivepele: filename=AdaptivePELE-1.6.3-cp35-cp35m-linux_armv7l.whl size=1414070 sha256=843a4ba6b03c34f08d3926f9c672ffecbe27f2d3a031f4e04cfba5ab92bf081b
2020-09-28T12:44:21,924   Stored in directory: /tmp/pip-ephem-wheel-cache-b97jksj2/wheels/49/e0/1e/56928069a7ddf129d76d1021b74a1c313190703ff7cc9d1508
2020-09-28T12:44:21,928 Successfully built adaptivepele
2020-09-28T12:44:22,471 Removed build tracker: '/tmp/pip-req-tracker-t6x65u6g'