2020-09-30T22:08:25,043 Created temporary directory: /tmp/pip-ephem-wheel-cache-z3zuak7z
2020-09-30T22:08:25,045 Created temporary directory: /tmp/pip-req-tracker-hacqjlpi
2020-09-30T22:08:25,046 Initialized build tracking at /tmp/pip-req-tracker-hacqjlpi
2020-09-30T22:08:25,046 Created build tracker: /tmp/pip-req-tracker-hacqjlpi
2020-09-30T22:08:25,046 Entered build tracker: /tmp/pip-req-tracker-hacqjlpi
2020-09-30T22:08:25,047 Created temporary directory: /tmp/pip-wheel-ff4v8i0g
2020-09-30T22:08:25,057 1 location(s) to search for versions of megalodon:
2020-09-30T22:08:25,057 * https://pypi.org/simple/megalodon/
2020-09-30T22:08:25,057 Fetching project page and analyzing links: https://pypi.org/simple/megalodon/
2020-09-30T22:08:25,057 Getting page https://pypi.org/simple/megalodon/
2020-09-30T22:08:25,059 Found index url https://pypi.org/simple
2020-09-30T22:08:25,237   Skipping link: none of the wheel's tags match: cp37-cp37m-macosx_10_14_x86_64: https://files.pythonhosted.org/packages/fe/5f/fc169f4470c2ab9a3d0dcf7b0eba0752a950494eb6587cbe3425724bcbaa/megalodon-1.0.0-cp37-cp37m-macosx_10_14_x86_64.whl#sha256=de244047d7a7d1f08a86fbed509d20eeed709187f84e765d9b9a4f5359364a30 (from https://pypi.org/simple/megalodon/)
2020-09-30T22:08:25,238   Found link https://files.pythonhosted.org/packages/9b/94/e9a546cb3958043d7378b0d1b5eebe01ca3923db3de08a10ef230e27dff5/megalodon-1.0.0.tar.gz#sha256=a547c80eb95763ecf13fed66023953fa8fe6c98082e9e249ef0f859772f01ccc (from https://pypi.org/simple/megalodon/), version: 1.0.0
2020-09-30T22:08:25,238   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/15/da/db7e0d83c7237552d45289530e9418d460c7a994f0d2b6a1735f98f62ecf/megalodon-2.0.0-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=bcea1352257f402f82787a2494ebc02f35503c15edd739fe8663f1417447be13 (from https://pypi.org/simple/megalodon/)
2020-09-30T22:08:25,239   Found link https://files.pythonhosted.org/packages/1d/e0/6a40deaac257dacfb2c31c056b37abd76e8ddfc8e852ea5117cb3d67b220/megalodon-2.0.0.tar.gz#sha256=28deb452ba87cfdf116bcdbc2e6335ab3220d363a7f545594d43c60cf8e9040c (from https://pypi.org/simple/megalodon/), version: 2.0.0
2020-09-30T22:08:25,239   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/33/7c/bfd056d9b7d5a618f61d28fe44d2402a16b6a959f9a30cd13f8dc7046e4c/megalodon-2.1.0-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=1052edf69302c8d018bdde48d6673c03364255acdfde0aa9938997fee66f7fbe (from https://pypi.org/simple/megalodon/)
2020-09-30T22:08:25,239   Found link https://files.pythonhosted.org/packages/aa/cc/b3c81dc70660c4e043180ea7535b8b42dd8724cddd784dbeb039ff2bf0c5/megalodon-2.1.0.tar.gz#sha256=1e6db96a9d14a1041b435f4cf0fdd19a0809490efd4c2d4dae7eeaa2423db3a3 (from https://pypi.org/simple/megalodon/), version: 2.1.0
2020-09-30T22:08:25,240   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/82/eb/8a50a84306188acf8c4dc1855184d652e6497a11343769b2d6b474a96d66/megalodon-2.2.0-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=d138a85f21444a1105bc8c056b92e44a3866692291d7af3d76f87dcab8f986b1 (from https://pypi.org/simple/megalodon/)
2020-09-30T22:08:25,240   Found link https://files.pythonhosted.org/packages/74/a9/32eb1037cb5e427a433a648e02fd0e3e137d8803320858190e7b2fec74a7/megalodon-2.2.0.tar.gz#sha256=0f057644f21ce76ea8b50625e297c9f9449e0710a9423387c4d7da43b4e13115 (from https://pypi.org/simple/megalodon/), version: 2.2.0
2020-09-30T22:08:25,240   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/82/27/2831a1d28162814e76b2e8a11fce724981e8859d1bc01f6466c242c4aca8/megalodon-2.2.1-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=2cad064accda0a6aef3ac728fc3a1bdd4016145eb16cb322b542b0312cdb5cd5 (from https://pypi.org/simple/megalodon/)
2020-09-30T22:08:25,241   Found link https://files.pythonhosted.org/packages/af/83/f12260694514be27333adb79165bc3958b59909eb21495b918a98e0e6f07/megalodon-2.2.1.tar.gz#sha256=33f3fdeae806a34fc9a0e2b3cb5b4d5bf7c1822c6eb00f9ed8a3cd2fb1327ef7 (from https://pypi.org/simple/megalodon/), version: 2.2.1
2020-09-30T22:08:25,241   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/23/94/863df7fd77e1944284db39b53c3cc1f70e0f8fcbf6986d2a88e6f4d580e8/megalodon-2.2.2-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=0d097cc1fef40f8687647b5b2762567b845af016da396720bdd831e205ee8a17 (from https://pypi.org/simple/megalodon/)
2020-09-30T22:08:25,241   Found link https://files.pythonhosted.org/packages/9e/46/69945645195a2fb592946734e200065f4789a25d58083d8c3abf9892a81f/megalodon-2.2.2.tar.gz#sha256=e4c1e59951187bee9113cbaa34e1b7e1481cd4445e7086e05e2f87ed2fdcff4b (from https://pypi.org/simple/megalodon/), version: 2.2.2
2020-09-30T22:08:25,242   Skipping link: none of the wheel's tags match: cp36-cp36m-macosx_10_9_x86_64: https://files.pythonhosted.org/packages/45/a6/2823df05db649df59c68dd45cf096fbfbfc329ef1d0f7ebec4f8d9f22aba/megalodon-2.2.3-cp36-cp36m-macosx_10_9_x86_64.whl#sha256=5d0a7ac3aa6682e765b65ccf21287f19adb13136c5bbf1df2261d3977ae8477d (from https://pypi.org/simple/megalodon/)
2020-09-30T22:08:25,242   Found link https://files.pythonhosted.org/packages/4e/ef/da0e43132c1e0eb419591aa7827c4283599e58693d0b62234154b82596ae/megalodon-2.2.3.tar.gz#sha256=15da8761287df96251e08960fbf4bb1d1f2acc35ed8f824923845db78e3e1d90 (from https://pypi.org/simple/megalodon/), version: 2.2.3
2020-09-30T22:08:25,244 Given no hashes to check 1 links for project 'megalodon': discarding no candidates
2020-09-30T22:08:25,244 Using version 2.2.3 (newest of versions: 2.2.3)
2020-09-30T22:08:25,248 Collecting megalodon==2.2.3
2020-09-30T22:08:25,250   Created temporary directory: /tmp/pip-unpack-q26i4khs
2020-09-30T22:08:25,290   Downloading megalodon-2.2.3.tar.gz (6.5 MB)
2020-09-30T22:08:26,633   Added megalodon==2.2.3 from https://files.pythonhosted.org/packages/4e/ef/da0e43132c1e0eb419591aa7827c4283599e58693d0b62234154b82596ae/megalodon-2.2.3.tar.gz#sha256=15da8761287df96251e08960fbf4bb1d1f2acc35ed8f824923845db78e3e1d90 to build tracker '/tmp/pip-req-tracker-hacqjlpi'
2020-09-30T22:08:26,634     Running setup.py (path:/tmp/pip-wheel-ff4v8i0g/megalodon/setup.py) egg_info for package megalodon
2020-09-30T22:08:26,635     Created temporary directory: /tmp/pip-pip-egg-info-puc5w05q
2020-09-30T22:08:26,635     Running command python setup.py egg_info
2020-09-30T22:08:27,856     running egg_info
2020-09-30T22:08:27,858     creating /tmp/pip-pip-egg-info-puc5w05q/megalodon.egg-info
2020-09-30T22:08:27,859     writing /tmp/pip-pip-egg-info-puc5w05q/megalodon.egg-info/PKG-INFO
2020-09-30T22:08:27,863     writing dependency_links to /tmp/pip-pip-egg-info-puc5w05q/megalodon.egg-info/dependency_links.txt
2020-09-30T22:08:27,865     writing entry points to /tmp/pip-pip-egg-info-puc5w05q/megalodon.egg-info/entry_points.txt
2020-09-30T22:08:27,866     writing requirements to /tmp/pip-pip-egg-info-puc5w05q/megalodon.egg-info/requires.txt
2020-09-30T22:08:27,867     writing top-level names to /tmp/pip-pip-egg-info-puc5w05q/megalodon.egg-info/top_level.txt
2020-09-30T22:08:27,870     writing manifest file '/tmp/pip-pip-egg-info-puc5w05q/megalodon.egg-info/SOURCES.txt'
2020-09-30T22:08:28,230     reading manifest file '/tmp/pip-pip-egg-info-puc5w05q/megalodon.egg-info/SOURCES.txt'
2020-09-30T22:08:28,232     reading manifest template 'MANIFEST.in'
2020-09-30T22:08:28,237     writing manifest file '/tmp/pip-pip-egg-info-puc5w05q/megalodon.egg-info/SOURCES.txt'
2020-09-30T22:08:28,338   Source in /tmp/pip-wheel-ff4v8i0g/megalodon has version 2.2.3, which satisfies requirement megalodon==2.2.3 from https://files.pythonhosted.org/packages/4e/ef/da0e43132c1e0eb419591aa7827c4283599e58693d0b62234154b82596ae/megalodon-2.2.3.tar.gz#sha256=15da8761287df96251e08960fbf4bb1d1f2acc35ed8f824923845db78e3e1d90
2020-09-30T22:08:28,339   Removed megalodon==2.2.3 from https://files.pythonhosted.org/packages/4e/ef/da0e43132c1e0eb419591aa7827c4283599e58693d0b62234154b82596ae/megalodon-2.2.3.tar.gz#sha256=15da8761287df96251e08960fbf4bb1d1f2acc35ed8f824923845db78e3e1d90 from build tracker '/tmp/pip-req-tracker-hacqjlpi'
2020-09-30T22:08:28,342 Building wheels for collected packages: megalodon
2020-09-30T22:08:28,347   Created temporary directory: /tmp/pip-wheel-_qj1xzb_
2020-09-30T22:08:28,347   Building wheel for megalodon (setup.py): started
2020-09-30T22:08:28,347   Destination directory: /tmp/pip-wheel-_qj1xzb_
2020-09-30T22:08:28,348   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-ff4v8i0g/megalodon/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-ff4v8i0g/megalodon/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-_qj1xzb_
2020-09-30T22:08:29,569   running bdist_wheel
2020-09-30T22:08:29,576   running build
2020-09-30T22:08:29,576   running build_py
2020-09-30T22:08:29,700   creating build
2020-09-30T22:08:29,701   creating build/lib.linux-armv7l-3.7
2020-09-30T22:08:29,701   creating build/lib.linux-armv7l-3.7/megalodon
2020-09-30T22:08:29,703   copying megalodon/backends.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-30T22:08:29,706   copying megalodon/megalodon_helper.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-30T22:08:29,708   copying megalodon/__init__.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-30T22:08:29,710   copying megalodon/variants.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-30T22:08:29,714   copying megalodon/aggregate.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-30T22:08:29,716   copying megalodon/_version.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-30T22:08:29,717   copying megalodon/mapping.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-30T22:08:29,720   copying megalodon/logging.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-30T22:08:29,723   copying megalodon/__main__.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-30T22:08:29,726   copying megalodon/signal_mapping.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-30T22:08:29,728   copying megalodon/calibration.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-30T22:08:29,731   copying megalodon/megalodon.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-30T22:08:29,736   copying megalodon/mods.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-30T22:08:29,742   copying megalodon/fast5_io.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-30T22:08:29,744   copying megalodon/megalodon_multiprocessing.py -> build/lib.linux-armv7l-3.7/megalodon
2020-09-30T22:08:29,749   creating build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-30T22:08:29,750   copying megalodon_extras/validate_compare_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-30T22:08:29,753   copying megalodon_extras/per_read_text_variants.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-30T22:08:29,755   copying megalodon_extras/__init__.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-30T22:08:29,757   copying megalodon_extras/validate_results.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-30T22:08:29,760   copying megalodon_extras/validate_aggregated_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-30T22:08:29,762   copying megalodon_extras/calibrate_generate_variant_stats.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-30T22:08:29,764   copying megalodon_extras/modified_bases_split_by_motif.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-30T22:08:29,766   copying megalodon_extras/calibrate_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-30T22:08:29,768   copying megalodon_extras/variants_resolve.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-30T22:08:29,770   copying megalodon_extras/_extras_parsers.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-30T22:08:29,773   copying megalodon_extras/modified_bases_describe_alphabet.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-30T22:08:29,775   copying megalodon_extras/variants_atomize.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-30T22:08:29,777   copying megalodon_extras/variants_index_database.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-30T22:08:29,779   copying megalodon_extras/modified_bases_create_ground_truth.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-30T22:08:29,781   copying megalodon_extras/variants_heterozygous_factor.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-30T22:08:29,783   copying megalodon_extras/phase_variants_extract_haplotype_reads.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-30T22:08:29,785   copying megalodon_extras/modified_bases_index_database.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-30T22:08:29,787   copying megalodon_extras/per_read_text_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-30T22:08:29,789   copying megalodon_extras/modified_bases_per_site_thresholds.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-30T22:08:29,792   copying megalodon_extras/modified_bases_estimate_threshold.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-30T22:08:29,794   copying megalodon_extras/modified_bases_update_database.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-30T22:08:29,796   copying megalodon_extras/__main__.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-30T22:08:29,799   copying megalodon_extras/aggregate_run.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-30T22:08:29,801   copying megalodon_extras/calibrate_generate_modified_base_stats.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-30T22:08:29,803   copying megalodon_extras/calibrate_merge_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-30T22:08:29,806   copying megalodon_extras/phase_variants_merge_haploid_variants.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-30T22:08:29,808   copying megalodon_extras/merge_variants.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-30T22:08:29,810   copying megalodon_extras/calibrate_variants.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-30T22:08:29,813   copying megalodon_extras/phase_variants_whatshap_filter.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-30T22:08:29,815   copying megalodon_extras/merge_modified_bases.py -> build/lib.linux-armv7l-3.7/megalodon_extras
2020-09-30T22:08:29,833   creating build/lib.linux-armv7l-3.7/megalodon/model_data
2020-09-30T22:08:29,833   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-09-30T22:08:29,835   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-09-30T22:08:29,840   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-09-30T22:08:29,843   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-09-30T22:08:29,844   copying megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-09-30T22:08:29,867   copying megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-09-30T22:08:29,873   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-30T22:08:29,874   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-30T22:08:29,878   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-30T22:08:29,888   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-30T22:08:29,912   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-30T22:08:29,919   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-09-30T22:08:29,920   copying megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-09-30T22:08:29,940   copying megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-09-30T22:08:29,949   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-09-30T22:08:29,950   copying megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-09-30T22:08:29,976   copying megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-09-30T22:08:29,982   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-09-30T22:08:29,984   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-09-30T22:08:29,989   copying megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-09-30T22:08:29,996   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-09-30T22:08:29,997   copying megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-09-30T22:08:30,026   copying megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-09-30T22:08:30,032   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-30T22:08:30,033   copying megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-30T22:08:30,038   copying megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-30T22:08:30,042   copying megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-30T22:08:30,071   copying megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-30T22:08:30,077   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-09-30T22:08:30,078   copying megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-09-30T22:08:30,097   copying megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-09-30T22:08:30,104   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-09-30T22:08:30,105   copying megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-09-30T22:08:30,129   copying megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-09-30T22:08:30,135   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-09-30T22:08:30,136   copying megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-09-30T22:08:30,157   copying megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-09-30T22:08:30,167   creating build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-09-30T22:08:30,168   copying megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-09-30T22:08:30,172   copying megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-09-30T22:08:30,176   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-09-30T22:08:30,177   copying megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-09-30T22:08:30,199   copying megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-09-30T22:08:30,208   creating build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-30T22:08:30,209   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-30T22:08:30,213   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-30T22:08:30,219   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.npz -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-30T22:08:30,243   copying megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.pdf -> build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-30T22:08:30,254   running build_ext
2020-09-30T22:08:30,451   cythoning megalodon/_decode.pyx to megalodon/_decode.c
2020-09-30T22:08:32,649   building 'megalodon.decode' extension
2020-09-30T22:08:32,649   creating build/temp.linux-armv7l-3.7
2020-09-30T22:08:32,650   creating build/temp.linux-armv7l-3.7/megalodon
2020-09-30T22:08:32,650   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c megalodon/_decode.c -o build/temp.linux-armv7l-3.7/megalodon/_decode.o -std=c99
2020-09-30T22:08:33,013   In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2020-09-30T22:08:33,013                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2020-09-30T22:08:33,013                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2020-09-30T22:08:33,013                    from megalodon/_decode.c:612:
2020-09-30T22:08:33,014   /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2020-09-30T22:08:33,014    #warning "Using deprecated NumPy API, disable it with " \
2020-09-30T22:08:33,014     ^~~~~~~
2020-09-30T22:08:42,953   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/megalodon/_decode.o -o build/lib.linux-armv7l-3.7/megalodon/decode.cpython-37m-arm-linux-gnueabihf.so
2020-09-30T22:08:43,113   installing to build/bdist.linux-armv7l/wheel
2020-09-30T22:08:43,113   running install
2020-09-30T22:08:43,115   running install_lib
2020-09-30T22:08:43,121   creating build/bdist.linux-armv7l
2020-09-30T22:08:43,121   creating build/bdist.linux-armv7l/wheel
2020-09-30T22:08:43,124   creating build/bdist.linux-armv7l/wheel/megalodon
2020-09-30T22:08:43,126   copying build/lib.linux-armv7l-3.7/megalodon/backends.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-30T22:08:43,130   copying build/lib.linux-armv7l-3.7/megalodon/megalodon_helper.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-30T22:08:43,133   copying build/lib.linux-armv7l-3.7/megalodon/__init__.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-30T22:08:43,136   creating build/bdist.linux-armv7l/wheel/megalodon/model_data
2020-09-30T22:08:43,138   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-09-30T22:08:43,140   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-09-30T22:08:43,144   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg
2020-09-30T22:08:43,148   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-09-30T22:08:43,149   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-09-30T22:08:43,172   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg
2020-09-30T22:08:43,179   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-30T22:08:43,180   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-30T22:08:43,184   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-30T22:08:43,190   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-30T22:08:43,215   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg
2020-09-30T22:08:43,223   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-09-30T22:08:43,224   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-09-30T22:08:43,243   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg
2020-09-30T22:08:43,249   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-09-30T22:08:43,250   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-09-30T22:08:43,392   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast.cfg
2020-09-30T22:08:43,404   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-09-30T22:08:43,405   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-09-30T22:08:43,412   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg
2020-09-30T22:08:43,421   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-09-30T22:08:43,422   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-09-30T22:08:43,454   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg
2020-09-30T22:08:43,462   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-30T22:08:43,463   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-30T22:08:43,468   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-30T22:08:43,471   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-30T22:08:43,497   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg
2020-09-30T22:08:43,505   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-09-30T22:08:43,505   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-09-30T22:08:43,524   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_fast.cfg
2020-09-30T22:08:43,531   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-09-30T22:08:43,531   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-09-30T22:08:43,556   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r10.3_450bps_hac.cfg
2020-09-30T22:08:43,563   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-09-30T22:08:43,564   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-09-30T22:08:43,589   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg
2020-09-30T22:08:43,596   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-09-30T22:08:43,597   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-09-30T22:08:43,600   copying build/lib.linux-armv7l-3.7/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg
2020-09-30T22:08:43,603   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-09-30T22:08:43,604   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-09-30T22:08:43,623   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_hac.cfg
2020-09-30T22:08:43,630   creating build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-30T22:08:43,631   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-30T22:08:43,636   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-30T22:08:43,644   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.npz -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-30T22:08:43,676   copying build/lib.linux-armv7l-3.7/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.pdf -> build/bdist.linux-armv7l/wheel/megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg
2020-09-30T22:08:43,682   copying build/lib.linux-armv7l-3.7/megalodon/variants.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-30T22:08:43,686   copying build/lib.linux-armv7l-3.7/megalodon/aggregate.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-30T22:08:43,689   copying build/lib.linux-armv7l-3.7/megalodon/_version.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-30T22:08:43,691   copying build/lib.linux-armv7l-3.7/megalodon/mapping.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-30T22:08:43,693   copying build/lib.linux-armv7l-3.7/megalodon/logging.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-30T22:08:43,695   copying build/lib.linux-armv7l-3.7/megalodon/__main__.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-30T22:08:43,698   copying build/lib.linux-armv7l-3.7/megalodon/signal_mapping.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-30T22:08:43,700   copying build/lib.linux-armv7l-3.7/megalodon/calibration.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-30T22:08:43,704   copying build/lib.linux-armv7l-3.7/megalodon/megalodon.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-30T22:08:43,709   copying build/lib.linux-armv7l-3.7/megalodon/decode.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-30T22:08:43,726   copying build/lib.linux-armv7l-3.7/megalodon/mods.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-30T22:08:43,733   copying build/lib.linux-armv7l-3.7/megalodon/fast5_io.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-30T22:08:43,734   copying build/lib.linux-armv7l-3.7/megalodon/megalodon_multiprocessing.py -> build/bdist.linux-armv7l/wheel/megalodon
2020-09-30T22:08:43,737   creating build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-30T22:08:43,738   copying build/lib.linux-armv7l-3.7/megalodon_extras/validate_compare_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-30T22:08:43,740   copying build/lib.linux-armv7l-3.7/megalodon_extras/per_read_text_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-30T22:08:43,743   copying build/lib.linux-armv7l-3.7/megalodon_extras/__init__.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-30T22:08:43,744   copying build/lib.linux-armv7l-3.7/megalodon_extras/validate_results.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-30T22:08:43,747   copying build/lib.linux-armv7l-3.7/megalodon_extras/validate_aggregated_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-30T22:08:43,750   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_generate_variant_stats.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-30T22:08:43,753   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_split_by_motif.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-30T22:08:43,755   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-30T22:08:43,758   copying build/lib.linux-armv7l-3.7/megalodon_extras/variants_resolve.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-30T22:08:43,761   copying build/lib.linux-armv7l-3.7/megalodon_extras/_extras_parsers.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-30T22:08:43,764   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_describe_alphabet.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-30T22:08:43,766   copying build/lib.linux-armv7l-3.7/megalodon_extras/variants_atomize.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-30T22:08:43,769   copying build/lib.linux-armv7l-3.7/megalodon_extras/variants_index_database.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-30T22:08:43,771   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_create_ground_truth.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-30T22:08:43,773   copying build/lib.linux-armv7l-3.7/megalodon_extras/variants_heterozygous_factor.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-30T22:08:43,776   copying build/lib.linux-armv7l-3.7/megalodon_extras/phase_variants_extract_haplotype_reads.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-30T22:08:43,778   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_index_database.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-30T22:08:43,780   copying build/lib.linux-armv7l-3.7/megalodon_extras/per_read_text_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-30T22:08:43,782   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_per_site_thresholds.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-30T22:08:43,785   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_estimate_threshold.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-30T22:08:43,787   copying build/lib.linux-armv7l-3.7/megalodon_extras/modified_bases_update_database.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-30T22:08:43,789   copying build/lib.linux-armv7l-3.7/megalodon_extras/__main__.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-30T22:08:43,792   copying build/lib.linux-armv7l-3.7/megalodon_extras/aggregate_run.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-30T22:08:43,794   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_generate_modified_base_stats.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-30T22:08:43,796   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_merge_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-30T22:08:43,798   copying build/lib.linux-armv7l-3.7/megalodon_extras/phase_variants_merge_haploid_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-30T22:08:43,801   copying build/lib.linux-armv7l-3.7/megalodon_extras/merge_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-30T22:08:43,803   copying build/lib.linux-armv7l-3.7/megalodon_extras/calibrate_variants.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-30T22:08:43,806   copying build/lib.linux-armv7l-3.7/megalodon_extras/phase_variants_whatshap_filter.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-30T22:08:43,808   copying build/lib.linux-armv7l-3.7/megalodon_extras/merge_modified_bases.py -> build/bdist.linux-armv7l/wheel/megalodon_extras
2020-09-30T22:08:43,810   running install_egg_info
2020-09-30T22:08:43,832   running egg_info
2020-09-30T22:08:43,833   writing megalodon.egg-info/PKG-INFO
2020-09-30T22:08:43,836   writing dependency_links to megalodon.egg-info/dependency_links.txt
2020-09-30T22:08:43,838   writing entry points to megalodon.egg-info/entry_points.txt
2020-09-30T22:08:43,839   writing requirements to megalodon.egg-info/requires.txt
2020-09-30T22:08:43,841   writing top-level names to megalodon.egg-info/top_level.txt
2020-09-30T22:08:43,863   reading manifest file 'megalodon.egg-info/SOURCES.txt'
2020-09-30T22:08:43,867   reading manifest template 'MANIFEST.in'
2020-09-30T22:08:43,875   writing manifest file 'megalodon.egg-info/SOURCES.txt'
2020-09-30T22:08:43,877   Copying megalodon.egg-info to build/bdist.linux-armv7l/wheel/megalodon-2.2.3-py3.7.egg-info
2020-09-30T22:08:43,893   running install_scripts
2020-09-30T22:08:43,962   adding license file "LICENCE.txt" (matched pattern "LICEN[CS]E*")
2020-09-30T22:08:43,968   creating build/bdist.linux-armv7l/wheel/megalodon-2.2.3.dist-info/WHEEL
2020-09-30T22:08:43,971   creating '/tmp/pip-wheel-_qj1xzb_/megalodon-2.2.3-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-09-30T22:08:43,975   adding 'megalodon/__init__.py'
2020-09-30T22:08:43,978   adding 'megalodon/__main__.py'
2020-09-30T22:08:43,980   adding 'megalodon/_version.py'
2020-09-30T22:08:43,983   adding 'megalodon/aggregate.py'
2020-09-30T22:08:43,990   adding 'megalodon/backends.py'
2020-09-30T22:08:43,992   adding 'megalodon/calibration.py'
2020-09-30T22:08:44,107   adding 'megalodon/decode.cpython-37m-arm-linux-gnueabihf.so'
2020-09-30T22:08:44,112   adding 'megalodon/fast5_io.py'
2020-09-30T22:08:44,114   adding 'megalodon/logging.py'
2020-09-30T22:08:44,116   adding 'megalodon/mapping.py'
2020-09-30T22:08:44,124   adding 'megalodon/megalodon.py'
2020-09-30T22:08:44,128   adding 'megalodon/megalodon_helper.py'
2020-09-30T22:08:44,130   adding 'megalodon/megalodon_multiprocessing.py'
2020-09-30T22:08:44,143   adding 'megalodon/mods.py'
2020-09-30T22:08:44,145   adding 'megalodon/signal_mapping.py'
2020-09-30T22:08:44,156   adding 'megalodon/variants.py'
2020-09-30T22:08:44,219   adding 'megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.npz'
2020-09-30T22:08:44,244   adding 'megalodon/model_data/dna_r10.3_450bps_fast.cfg/megalodon_variant_calibration.pdf'
2020-09-30T22:08:44,294   adding 'megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.npz'
2020-09-30T22:08:44,322   adding 'megalodon/model_data/dna_r10.3_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf'
2020-09-30T22:08:44,369   adding 'megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.npz'
2020-09-30T22:08:44,396   adding 'megalodon/model_data/dna_r10.3_450bps_hac.cfg/megalodon_variant_calibration.pdf'
2020-09-30T22:08:44,447   adding 'megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.npz'
2020-09-30T22:08:44,474   adding 'megalodon/model_data/dna_r10.3_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf'
2020-09-30T22:08:44,553   adding 'megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.npz'
2020-09-30T22:08:44,579   adding 'megalodon/model_data/dna_r9.4.1_450bps_fast.cfg/megalodon_variant_calibration.pdf'
2020-09-30T22:08:44,634   adding 'megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.npz'
2020-09-30T22:08:44,661   adding 'megalodon/model_data/dna_r9.4.1_450bps_fast_prom.cfg/megalodon_variant_calibration.pdf'
2020-09-30T22:08:44,720   adding 'megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.npz'
2020-09-30T22:08:44,747   adding 'megalodon/model_data/dna_r9.4.1_450bps_hac.cfg/megalodon_variant_calibration.pdf'
2020-09-30T22:08:44,797   adding 'megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.npz'
2020-09-30T22:08:44,824   adding 'megalodon/model_data/dna_r9.4.1_450bps_hac_prom.cfg/megalodon_variant_calibration.pdf'
2020-09-30T22:08:44,834   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.npz'
2020-09-30T22:08:44,855   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_mod_calibration.pdf'
2020-09-30T22:08:44,912   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.npz'
2020-09-30T22:08:44,941   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg/megalodon_variant_calibration.pdf'
2020-09-30T22:08:44,952   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.npz'
2020-09-30T22:08:44,972   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_mod_calibration.pdf'
2020-09-30T22:08:45,027   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.npz'
2020-09-30T22:08:45,056   adding 'megalodon/model_data/dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac_prom.cfg/megalodon_variant_calibration.pdf'
2020-09-30T22:08:45,064   adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.npz'
2020-09-30T22:08:45,068   adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_mod_calibration.pdf'
2020-09-30T22:08:45,113   adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.npz'
2020-09-30T22:08:45,140   adding 'megalodon/model_data/res_dna_r941_min_modbases-all-context_v001.cfg/megalodon_variant_calibration.pdf'
2020-09-30T22:08:45,149   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.npz'
2020-09-30T22:08:45,169   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_5hmC_CpG_v001.cfg/megalodon_mod_calibration.pdf'
2020-09-30T22:08:45,175   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz'
2020-09-30T22:08:45,178   adding 'megalodon/model_data/res_dna_r941_min_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf'
2020-09-30T22:08:45,183   adding 'megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.npz'
2020-09-30T22:08:45,186   adding 'megalodon/model_data/res_dna_r941_prom_modbases_5mC_CpG_v001.cfg/megalodon_mod_calibration.pdf'
2020-09-30T22:08:45,189   adding 'megalodon_extras/__init__.py'
2020-09-30T22:08:45,191   adding 'megalodon_extras/__main__.py'
2020-09-30T22:08:45,195   adding 'megalodon_extras/_extras_parsers.py'
2020-09-30T22:08:45,196   adding 'megalodon_extras/aggregate_run.py'
2020-09-30T22:08:45,198   adding 'megalodon_extras/calibrate_generate_modified_base_stats.py'
2020-09-30T22:08:45,200   adding 'megalodon_extras/calibrate_generate_variant_stats.py'
2020-09-30T22:08:45,202   adding 'megalodon_extras/calibrate_merge_modified_bases.py'
2020-09-30T22:08:45,203   adding 'megalodon_extras/calibrate_modified_bases.py'
2020-09-30T22:08:45,205   adding 'megalodon_extras/calibrate_variants.py'
2020-09-30T22:08:45,207   adding 'megalodon_extras/merge_modified_bases.py'
2020-09-30T22:08:45,208   adding 'megalodon_extras/merge_variants.py'
2020-09-30T22:08:45,209   adding 'megalodon_extras/modified_bases_create_ground_truth.py'
2020-09-30T22:08:45,210   adding 'megalodon_extras/modified_bases_describe_alphabet.py'
2020-09-30T22:08:45,212   adding 'megalodon_extras/modified_bases_estimate_threshold.py'
2020-09-30T22:08:45,214   adding 'megalodon_extras/modified_bases_index_database.py'
2020-09-30T22:08:45,215   adding 'megalodon_extras/modified_bases_per_site_thresholds.py'
2020-09-30T22:08:45,217   adding 'megalodon_extras/modified_bases_split_by_motif.py'
2020-09-30T22:08:45,218   adding 'megalodon_extras/modified_bases_update_database.py'
2020-09-30T22:08:45,219   adding 'megalodon_extras/per_read_text_modified_bases.py'
2020-09-30T22:08:45,220   adding 'megalodon_extras/per_read_text_variants.py'
2020-09-30T22:08:45,222   adding 'megalodon_extras/phase_variants_extract_haplotype_reads.py'
2020-09-30T22:08:45,224   adding 'megalodon_extras/phase_variants_merge_haploid_variants.py'
2020-09-30T22:08:45,225   adding 'megalodon_extras/phase_variants_whatshap_filter.py'
2020-09-30T22:08:45,227   adding 'megalodon_extras/validate_aggregated_modified_bases.py'
2020-09-30T22:08:45,228   adding 'megalodon_extras/validate_compare_modified_bases.py'
2020-09-30T22:08:45,231   adding 'megalodon_extras/validate_results.py'
2020-09-30T22:08:45,232   adding 'megalodon_extras/variants_atomize.py'
2020-09-30T22:08:45,234   adding 'megalodon_extras/variants_heterozygous_factor.py'
2020-09-30T22:08:45,235   adding 'megalodon_extras/variants_index_database.py'
2020-09-30T22:08:45,237   adding 'megalodon_extras/variants_resolve.py'
2020-09-30T22:08:45,239   adding 'megalodon-2.2.3.dist-info/LICENCE.txt'
2020-09-30T22:08:45,241   adding 'megalodon-2.2.3.dist-info/METADATA'
2020-09-30T22:08:45,242   adding 'megalodon-2.2.3.dist-info/WHEEL'
2020-09-30T22:08:45,243   adding 'megalodon-2.2.3.dist-info/entry_points.txt'
2020-09-30T22:08:45,244   adding 'megalodon-2.2.3.dist-info/top_level.txt'
2020-09-30T22:08:45,245   adding 'megalodon-2.2.3.dist-info/RECORD'
2020-09-30T22:08:45,362   removing build/bdist.linux-armv7l/wheel
2020-09-30T22:08:45,672   Building wheel for megalodon (setup.py): finished with status 'done'
2020-09-30T22:08:45,743   Created wheel for megalodon: filename=megalodon-2.2.3-cp37-cp37m-linux_armv7l.whl size=6721681 sha256=bb24e140ecc518896eac10117596639556fdc460513dc2a3827ba86f0b9de4d9
2020-09-30T22:08:45,743   Stored in directory: /tmp/pip-ephem-wheel-cache-z3zuak7z/wheels/6a/29/0a/23284d1c44cf0f2b0e9d42c88f94ca8b3df0d3da2cdb965870
2020-09-30T22:08:45,745 Successfully built megalodon
2020-09-30T22:08:45,972 Removed build tracker: '/tmp/pip-req-tracker-hacqjlpi'