2020-10-08T12:08:44,937 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-10-08T12:08:45,655 Created temporary directory: /tmp/pip-ephem-wheel-cache-nz759rkp
2020-10-08T12:08:45,660 Created temporary directory: /tmp/pip-req-tracker-9rl_ki1_
2020-10-08T12:08:45,660 Initialized build tracking at /tmp/pip-req-tracker-9rl_ki1_
2020-10-08T12:08:45,661 Created build tracker: /tmp/pip-req-tracker-9rl_ki1_
2020-10-08T12:08:45,661 Entered build tracker: /tmp/pip-req-tracker-9rl_ki1_
2020-10-08T12:08:45,663 Created temporary directory: /tmp/pip-wheel-zwooehvc
2020-10-08T12:08:45,684 1 location(s) to search for versions of scipion-em-relion:
2020-10-08T12:08:45,684 * https://pypi.org/simple/scipion-em-relion/
2020-10-08T12:08:45,684 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-relion/
2020-10-08T12:08:45,686 Getting page https://pypi.org/simple/scipion-em-relion/
2020-10-08T12:08:45,690 Found index url https://pypi.org/simple
2020-10-08T12:08:46,029   Found link https://files.pythonhosted.org/packages/05/a2/d5f1ffa8537f36f40b34263047919ae34baccbe64147bc68cc6c3f8777d9/scipion-em-relion-1.0.0.tar.gz#sha256=b12f8f634114a7e3cb0b33d7f6204bc47b8b5bb3815d3855feedbada752368fb (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.0
2020-10-08T12:08:46,030   Found link https://files.pythonhosted.org/packages/48/4b/02aa5c517d8e6db7aa85d26b76f016841c9e34d58e21e04fa23423a9ef06/scipion-em-relion-1.0.1.tar.gz#sha256=6d7d065852276760640e5c6cb90a35fa93e7096556cdd591d015085c4b3a2792 (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.1
2020-10-08T12:08:46,031   Found link https://files.pythonhosted.org/packages/55/7b/90403e2f937a52301e27955b49665b462df0c4ab02da6444c01f3543ae42/scipion-em-relion-1.0.2.tar.gz#sha256=e53dc640184f6e78f8449bd9bf03524820495b8e2eaf219cc558a87da89dbf22 (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.2
2020-10-08T12:08:46,032   Found link https://files.pythonhosted.org/packages/57/e2/3c6741b62688a1b20b159f7efa0139a9573eb17d72d745b3023f2e8a51fd/scipion-em-relion-1.0.3.tar.gz#sha256=5084bfc2edf75de02f0577fe57e3f63de3e20fff862a40525971c5c3682d072a (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.3
2020-10-08T12:08:46,033   Found link https://files.pythonhosted.org/packages/dd/92/ea6e7092b04a7b25c526d2c0e4243183e4146b3cbd85a6950875083a3abb/scipion-em-relion-1.0.4.tar.gz#sha256=d7adc3cc5c1f4f631cd298cea58e8c3ec035902362ba1f875059f2f9b4b58c1b (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.4
2020-10-08T12:08:46,034   Found link https://files.pythonhosted.org/packages/fb/c0/9945e6d60f050b3493b46e980c1feaab668dee0cd15ba2b5030c2875bbf0/scipion-em-relion-1.0.5.tar.gz#sha256=2eeaed3eef32e0a16656bd36e4648aa68d6f3b45e8caa9e9a7af36e3a72b6449 (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.5
2020-10-08T12:08:46,035   Found link https://files.pythonhosted.org/packages/86/87/bfc3ea75b9f88d116bc644ef38d709bc3a1e8cde59fc7af1cd944596713b/scipion-em-relion-1.0.6.tar.gz#sha256=326a1814aa725f2ce3bb40d7cc535d3057f17eac6a8e36232483070d2ac19d26 (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.6
2020-10-08T12:08:46,036   Found link https://files.pythonhosted.org/packages/70/c1/24483e734ce2077d9fb9b1bb370ddf6ec2430e962fc1349e7ab1ac736137/scipion-em-relion-1.0.7.tar.gz#sha256=06becee63db18acc16ae2d22bac5f5c55e495922246f5aea10ffe4f47d40d9f7 (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.7
2020-10-08T12:08:46,037   Found link https://files.pythonhosted.org/packages/1f/82/9f8eb2869092529d10d9d3fbdf685a232eb70971678ee502858c7c4c7e64/scipion-em-relion-1.0.8.tar.gz#sha256=88105eba3688fb98a76d3e9e5343f4688ee191a6e45343b24344e2b9ddb1b754 (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.8
2020-10-08T12:08:46,038   Found link https://files.pythonhosted.org/packages/f2/3f/211e14befe51bb9447e4d024f3e01c48e96049dd00e6ca402e0b2c1e2ac6/scipion-em-relion-1.0.9.tar.gz#sha256=4fc9a904a99fbd81617b29fd9e5f6e15b67c0da5a1ed5519c548985fb0954af4 (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.9
2020-10-08T12:08:46,039   Found link https://files.pythonhosted.org/packages/52/35/ffacafc5bfeeaa67e4f41bb7cff72d0a62924866ebfd565d44ec97f57b7e/scipion-em-relion-3.0.0a1.tar.gz#sha256=ceefcb9d9fe9dec42a2838ae004efc858f589aa0df5c2fd3dd561754a07d9969 (from https://pypi.org/simple/scipion-em-relion/), version: 3.0.0a1
2020-10-08T12:08:46,039   Found link https://files.pythonhosted.org/packages/64/b6/c4d9a3c1c2aa67344f07b6228f53e9e0ebab0fe70fc7516f55eaa0460d68/scipion-em-relion-3.0.0a3.tar.gz#sha256=8accb26c90bfd2965210da73a519217124a0e43bf97e046aca0431f9545e81f4 (from https://pypi.org/simple/scipion-em-relion/), version: 3.0.0a3
2020-10-08T12:08:46,040   Found link https://files.pythonhosted.org/packages/13/d4/100456e9fa33dc38a0b1b5227e351f37c088e576cb3ea18107fb046b2615/scipion-em-relion-3.0.0a4.tar.gz#sha256=6c3166a3000da47d9a72149e9bb67a8e702ae5e03a98b161b3eb104bcffec701 (from https://pypi.org/simple/scipion-em-relion/), version: 3.0.0a4
2020-10-08T12:08:46,041   Found link https://files.pythonhosted.org/packages/19/64/82b66e24e5915acf91cc9d42addb90fd8d6248afaf1c5726e086db0a9700/scipion-em-relion-3.0.0a5.tar.gz#sha256=3505e13ec6415d74268a84fd5140d996bc02970682ad3f3d5dab8ee355ac93c5 (from https://pypi.org/simple/scipion-em-relion/), version: 3.0.0a5
2020-10-08T12:08:46,042   Found link https://files.pythonhosted.org/packages/ec/16/5e1dd00f12159cbcd595e7fa61492be85d6ab9bb1e67d42f2894c688b1e6/scipion-em-relion-3.0.0b1.tar.gz#sha256=43de695bdd99abb6914c9c3749a87f39d92fd3125c1d9ecb5b7298ce671deb83 (from https://pypi.org/simple/scipion-em-relion/), version: 3.0.0b1
2020-10-08T12:08:46,043   Found link https://files.pythonhosted.org/packages/f0/d5/ed0c37467a7da0eed41919c536e67003ea386063732fb6a09c4344a7db5b/scipion-em-relion-3.0.0b2.tar.gz#sha256=20bbc33ec7673a9c8f43a964416d0caf36671d74a8320bcbfb187c160aab74f5 (from https://pypi.org/simple/scipion-em-relion/), version: 3.0.0b2
2020-10-08T12:08:46,044   Found link https://files.pythonhosted.org/packages/cb/7e/ebf83f96c8b01ce4f9460f361a12edc9c894bdcff686b163b39d9ac1e0a8/scipion-em-relion-3.0.0b3.tar.gz#sha256=19b4a505b631952fcafd3ce2d407f93047b3ca747c1f65d7136401a8eff3ea32 (from https://pypi.org/simple/scipion-em-relion/), version: 3.0.0b3
2020-10-08T12:08:46,061 Given no hashes to check 1 links for project 'scipion-em-relion': discarding no candidates
2020-10-08T12:08:46,063 Using version 3.0.0b3 (newest of versions: 3.0.0b3)
2020-10-08T12:08:46,072 Collecting scipion-em-relion==3.0.0b3
2020-10-08T12:08:46,077   Created temporary directory: /tmp/pip-unpack-co_1ww90
2020-10-08T12:08:46,308   Downloading scipion-em-relion-3.0.0b3.tar.gz (195 kB)
2020-10-08T12:08:46,919   Added scipion-em-relion==3.0.0b3 from https://files.pythonhosted.org/packages/cb/7e/ebf83f96c8b01ce4f9460f361a12edc9c894bdcff686b163b39d9ac1e0a8/scipion-em-relion-3.0.0b3.tar.gz#sha256=19b4a505b631952fcafd3ce2d407f93047b3ca747c1f65d7136401a8eff3ea32 to build tracker '/tmp/pip-req-tracker-9rl_ki1_'
2020-10-08T12:08:46,923     Running setup.py (path:/tmp/pip-wheel-zwooehvc/scipion-em-relion/setup.py) egg_info for package scipion-em-relion
2020-10-08T12:08:46,925     Created temporary directory: /tmp/pip-pip-egg-info-hxy36bfc
2020-10-08T12:08:46,926     Running command python setup.py egg_info
2020-10-08T12:08:49,291     running egg_info
2020-10-08T12:08:49,297     creating /tmp/pip-pip-egg-info-hxy36bfc/scipion_em_relion.egg-info
2020-10-08T12:08:49,300     writing requirements to /tmp/pip-pip-egg-info-hxy36bfc/scipion_em_relion.egg-info/requires.txt
2020-10-08T12:08:49,303     writing dependency_links to /tmp/pip-pip-egg-info-hxy36bfc/scipion_em_relion.egg-info/dependency_links.txt
2020-10-08T12:08:49,305     writing entry points to /tmp/pip-pip-egg-info-hxy36bfc/scipion_em_relion.egg-info/entry_points.txt
2020-10-08T12:08:49,307     writing top-level names to /tmp/pip-pip-egg-info-hxy36bfc/scipion_em_relion.egg-info/top_level.txt
2020-10-08T12:08:49,309     writing /tmp/pip-pip-egg-info-hxy36bfc/scipion_em_relion.egg-info/PKG-INFO
2020-10-08T12:08:49,317     writing manifest file '/tmp/pip-pip-egg-info-hxy36bfc/scipion_em_relion.egg-info/SOURCES.txt'
2020-10-08T12:08:49,691     reading manifest file '/tmp/pip-pip-egg-info-hxy36bfc/scipion_em_relion.egg-info/SOURCES.txt'
2020-10-08T12:08:49,694     reading manifest template 'MANIFEST.in'
2020-10-08T12:08:49,710     writing manifest file '/tmp/pip-pip-egg-info-hxy36bfc/scipion_em_relion.egg-info/SOURCES.txt'
2020-10-08T12:08:49,851   Source in /tmp/pip-wheel-zwooehvc/scipion-em-relion has version 3.0.0b3, which satisfies requirement scipion-em-relion==3.0.0b3 from https://files.pythonhosted.org/packages/cb/7e/ebf83f96c8b01ce4f9460f361a12edc9c894bdcff686b163b39d9ac1e0a8/scipion-em-relion-3.0.0b3.tar.gz#sha256=19b4a505b631952fcafd3ce2d407f93047b3ca747c1f65d7136401a8eff3ea32
2020-10-08T12:08:49,853   Removed scipion-em-relion==3.0.0b3 from https://files.pythonhosted.org/packages/cb/7e/ebf83f96c8b01ce4f9460f361a12edc9c894bdcff686b163b39d9ac1e0a8/scipion-em-relion-3.0.0b3.tar.gz#sha256=19b4a505b631952fcafd3ce2d407f93047b3ca747c1f65d7136401a8eff3ea32 from build tracker '/tmp/pip-req-tracker-9rl_ki1_'
2020-10-08T12:08:49,858 Building wheels for collected packages: scipion-em-relion
2020-10-08T12:08:49,867   Created temporary directory: /tmp/pip-wheel-usczyrut
2020-10-08T12:08:49,868   Building wheel for scipion-em-relion (setup.py): started
2020-10-08T12:08:49,869   Destination directory: /tmp/pip-wheel-usczyrut
2020-10-08T12:08:49,870   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-zwooehvc/scipion-em-relion/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-zwooehvc/scipion-em-relion/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-usczyrut
2020-10-08T12:08:52,298   running bdist_wheel
2020-10-08T12:08:52,314   running build
2020-10-08T12:08:52,315   running build_py
2020-10-08T12:08:52,662   creating build
2020-10-08T12:08:52,662   creating build/lib
2020-10-08T12:08:52,664   creating build/lib/relion
2020-10-08T12:08:52,667   copying relion/wizards.py -> build/lib/relion
2020-10-08T12:08:52,674   copying relion/constants.py -> build/lib/relion
2020-10-08T12:08:52,680   copying relion/bibtex.py -> build/lib/relion
2020-10-08T12:08:52,686   copying relion/__init__.py -> build/lib/relion
2020-10-08T12:08:52,692   copying relion/objects.py -> build/lib/relion
2020-10-08T12:08:52,706   creating build/lib/relion/protocols
2020-10-08T12:08:52,708   copying relion/protocols/protocol_reconstruct.py -> build/lib/relion/protocols
2020-10-08T12:08:52,714   copying relion/protocols/protocol_postprocess.py -> build/lib/relion/protocols
2020-10-08T12:08:52,720   copying relion/protocols/protocol_export_ctf.py -> build/lib/relion/protocols
2020-10-08T12:08:52,725   copying relion/protocols/protocol_classify3d.py -> build/lib/relion/protocols
2020-10-08T12:08:52,731   copying relion/protocols/protocol_assign_optic_groups.py -> build/lib/relion/protocols
2020-10-08T12:08:52,737   copying relion/protocols/protocol_subtract.py -> build/lib/relion/protocols
2020-10-08T12:08:52,743   copying relion/protocols/protocol_autopick_ref.py -> build/lib/relion/protocols
2020-10-08T12:08:52,753   copying relion/protocols/protocol_preprocess.py -> build/lib/relion/protocols
2020-10-08T12:08:52,760   copying relion/protocols/protocol_multibody.py -> build/lib/relion/protocols
2020-10-08T12:08:52,767   copying relion/protocols/protocol_initialmodel.py -> build/lib/relion/protocols
2020-10-08T12:08:52,774   copying relion/protocols/protocol_classify2d.py -> build/lib/relion/protocols
2020-10-08T12:08:52,780   copying relion/protocols/protocol_center_averages.py -> build/lib/relion/protocols
2020-10-08T12:08:52,785   copying relion/protocols/protocol_autopick_log.py -> build/lib/relion/protocols
2020-10-08T12:08:52,793   copying relion/protocols/protocol_compress_estimate_gain.py -> build/lib/relion/protocols
2020-10-08T12:08:52,799   copying relion/protocols/__init__.py -> build/lib/relion/protocols
2020-10-08T12:08:52,805   copying relion/protocols/protocol_compress_movies.py -> build/lib/relion/protocols
2020-10-08T12:08:52,811   copying relion/protocols/protocol_sort.py -> build/lib/relion/protocols
2020-10-08T12:08:52,817   copying relion/protocols/protocol_symmetrize_volume.py -> build/lib/relion/protocols
2020-10-08T12:08:52,822   copying relion/protocols/protocol_export_particles.py -> build/lib/relion/protocols
2020-10-08T12:08:52,829   copying relion/protocols/protocol_ctf_refinement.py -> build/lib/relion/protocols
2020-10-08T12:08:52,837   copying relion/protocols/protocol_expand_symmetry.py -> build/lib/relion/protocols
2020-10-08T12:08:52,844   copying relion/protocols/protocol_remove_views.py -> build/lib/relion/protocols
2020-10-08T12:08:52,851   copying relion/protocols/protocol_motioncor.py -> build/lib/relion/protocols
2020-10-08T12:08:52,860   copying relion/protocols/protocol_refine3d.py -> build/lib/relion/protocols
2020-10-08T12:08:52,867   copying relion/protocols/protocol_base.py -> build/lib/relion/protocols
2020-10-08T12:08:52,880   copying relion/protocols/protocol_localres.py -> build/lib/relion/protocols
2020-10-08T12:08:52,888   copying relion/protocols/protocol_autopick.py -> build/lib/relion/protocols
2020-10-08T12:08:52,894   copying relion/protocols/protocol_create_mask3d.py -> build/lib/relion/protocols
2020-10-08T12:08:52,902   copying relion/protocols/protocol_extract_particles.py -> build/lib/relion/protocols
2020-10-08T12:08:52,910   copying relion/protocols/protocol_bayesian_polishing.py -> build/lib/relion/protocols
2020-10-08T12:08:52,918   copying relion/protocols/protocol_export_coords.py -> build/lib/relion/protocols
2020-10-08T12:08:52,927   creating build/lib/relion/viewers
2020-10-08T12:08:52,930   copying relion/viewers/viewer_locres.py -> build/lib/relion/viewers
2020-10-08T12:08:52,935   copying relion/viewers/viewer_sort.py -> build/lib/relion/viewers
2020-10-08T12:08:52,940   copying relion/viewers/viewer_postprocess.py -> build/lib/relion/viewers
2020-10-08T12:08:52,946   copying relion/viewers/viewer_polishing.py -> build/lib/relion/viewers
2020-10-08T12:08:52,953   copying relion/viewers/viewer_ctfrefine.py -> build/lib/relion/viewers
2020-10-08T12:08:52,961   copying relion/viewers/__init__.py -> build/lib/relion/viewers
2020-10-08T12:08:52,967   copying relion/viewers/viewer_base.py -> build/lib/relion/viewers
2020-10-08T12:08:52,978   copying relion/viewers/viewer_motioncor.py -> build/lib/relion/viewers
2020-10-08T12:08:52,990   creating build/lib/relion/convert
2020-10-08T12:08:52,993   copying relion/convert/convert_coordinates.py -> build/lib/relion/convert
2020-10-08T12:08:53,000   copying relion/convert/convert_base.py -> build/lib/relion/convert
2020-10-08T12:08:53,007   copying relion/convert/convert_utils.py -> build/lib/relion/convert
2020-10-08T12:08:53,014   copying relion/convert/__init__.py -> build/lib/relion/convert
2020-10-08T12:08:53,023   copying relion/convert/convert_deprecated.py -> build/lib/relion/convert
2020-10-08T12:08:53,032   copying relion/convert/dataimport.py -> build/lib/relion/convert
2020-10-08T12:08:53,040   copying relion/convert/convert30.py -> build/lib/relion/convert
2020-10-08T12:08:53,046   copying relion/convert/convert31.py -> build/lib/relion/convert
2020-10-08T12:08:53,057   creating build/lib/relion/tests
2020-10-08T12:08:53,062   copying relion/tests/test_convert_relion.py -> build/lib/relion/tests
2020-10-08T12:08:53,073   copying relion/tests/__init__.py -> build/lib/relion/tests
2020-10-08T12:08:53,078   copying relion/tests/test_workflow_relion3.py -> build/lib/relion/tests
2020-10-08T12:08:53,085   copying relion/tests/test_protocols_relion3.py -> build/lib/relion/tests
2020-10-08T12:08:53,092   copying relion/tests/test_protocols_relion.py -> build/lib/relion/tests
2020-10-08T12:08:53,116   copying relion/relion_logo.png -> build/lib/relion
2020-10-08T12:08:53,121   copying relion/protocols.conf -> build/lib/relion
2020-10-08T12:08:53,127   creating build/lib/relion/convert/mtfs
2020-10-08T12:08:53,129   copying relion/convert/mtfs/mtf_f3_300_ec.star -> build/lib/relion/convert/mtfs
2020-10-08T12:08:53,135   copying relion/convert/mtfs/mtf_f3_200_ec.star -> build/lib/relion/convert/mtfs
2020-10-08T12:08:53,140   copying relion/convert/mtfs/mtf_k2_300_ec.star -> build/lib/relion/convert/mtfs
2020-10-08T12:08:53,147   copying relion/convert/mtfs/mtf_f2_300.star -> build/lib/relion/convert/mtfs
2020-10-08T12:08:53,154   copying relion/convert/mtfs/mtf_de20_300.star -> build/lib/relion/convert/mtfs
2020-10-08T12:08:53,187   installing to build/bdist.linux-armv7l/wheel
2020-10-08T12:08:53,188   running install
2020-10-08T12:08:53,190   running install_lib
2020-10-08T12:08:53,198   creating build/bdist.linux-armv7l
2020-10-08T12:08:53,199   creating build/bdist.linux-armv7l/wheel
2020-10-08T12:08:53,203   creating build/bdist.linux-armv7l/wheel/relion
2020-10-08T12:08:53,206   copying build/lib/relion/wizards.py -> build/bdist.linux-armv7l/wheel/relion
2020-10-08T12:08:53,212   copying build/lib/relion/constants.py -> build/bdist.linux-armv7l/wheel/relion
2020-10-08T12:08:53,218   copying build/lib/relion/bibtex.py -> build/bdist.linux-armv7l/wheel/relion
2020-10-08T12:08:53,225   copying build/lib/relion/__init__.py -> build/bdist.linux-armv7l/wheel/relion
2020-10-08T12:08:53,231   copying build/lib/relion/relion_logo.png -> build/bdist.linux-armv7l/wheel/relion
2020-10-08T12:08:53,238   copying build/lib/relion/protocols.conf -> build/bdist.linux-armv7l/wheel/relion
2020-10-08T12:08:53,249   creating build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-08T12:08:53,254   copying build/lib/relion/protocols/protocol_reconstruct.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-08T12:08:53,261   copying build/lib/relion/protocols/protocol_postprocess.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-08T12:08:53,268   copying build/lib/relion/protocols/protocol_export_ctf.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-08T12:08:53,275   copying build/lib/relion/protocols/protocol_classify3d.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-08T12:08:53,282   copying build/lib/relion/protocols/protocol_assign_optic_groups.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-08T12:08:53,291   copying build/lib/relion/protocols/protocol_subtract.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-08T12:08:53,298   copying build/lib/relion/protocols/protocol_autopick_ref.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-08T12:08:53,307   copying build/lib/relion/protocols/protocol_preprocess.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-08T12:08:53,314   copying build/lib/relion/protocols/protocol_multibody.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-08T12:08:53,322   copying build/lib/relion/protocols/protocol_initialmodel.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-08T12:08:53,329   copying build/lib/relion/protocols/protocol_classify2d.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-08T12:08:53,335   copying build/lib/relion/protocols/protocol_center_averages.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-08T12:08:53,339   copying build/lib/relion/protocols/protocol_autopick_log.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-08T12:08:53,346   copying build/lib/relion/protocols/protocol_compress_estimate_gain.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-08T12:08:53,353   copying build/lib/relion/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-08T12:08:53,359   copying build/lib/relion/protocols/protocol_compress_movies.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-08T12:08:53,365   copying build/lib/relion/protocols/protocol_sort.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-08T12:08:53,372   copying build/lib/relion/protocols/protocol_symmetrize_volume.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-08T12:08:53,376   copying build/lib/relion/protocols/protocol_export_particles.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-08T12:08:53,382   copying build/lib/relion/protocols/protocol_ctf_refinement.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-08T12:08:53,390   copying build/lib/relion/protocols/protocol_expand_symmetry.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-08T12:08:53,398   copying build/lib/relion/protocols/protocol_remove_views.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-08T12:08:53,405   copying build/lib/relion/protocols/protocol_motioncor.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-08T12:08:53,413   copying build/lib/relion/protocols/protocol_refine3d.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-08T12:08:53,420   copying build/lib/relion/protocols/protocol_base.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-08T12:08:53,433   copying build/lib/relion/protocols/protocol_localres.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-08T12:08:53,440   copying build/lib/relion/protocols/protocol_autopick.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-08T12:08:53,447   copying build/lib/relion/protocols/protocol_create_mask3d.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-08T12:08:53,455   copying build/lib/relion/protocols/protocol_extract_particles.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-08T12:08:53,463   copying build/lib/relion/protocols/protocol_bayesian_polishing.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-08T12:08:53,471   copying build/lib/relion/protocols/protocol_export_coords.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-08T12:08:53,479   creating build/bdist.linux-armv7l/wheel/relion/viewers
2020-10-08T12:08:53,482   copying build/lib/relion/viewers/viewer_locres.py -> build/bdist.linux-armv7l/wheel/relion/viewers
2020-10-08T12:08:53,489   copying build/lib/relion/viewers/viewer_sort.py -> build/bdist.linux-armv7l/wheel/relion/viewers
2020-10-08T12:08:53,495   copying build/lib/relion/viewers/viewer_postprocess.py -> build/bdist.linux-armv7l/wheel/relion/viewers
2020-10-08T12:08:53,502   copying build/lib/relion/viewers/viewer_polishing.py -> build/bdist.linux-armv7l/wheel/relion/viewers
2020-10-08T12:08:53,509   copying build/lib/relion/viewers/viewer_ctfrefine.py -> build/bdist.linux-armv7l/wheel/relion/viewers
2020-10-08T12:08:53,517   copying build/lib/relion/viewers/__init__.py -> build/bdist.linux-armv7l/wheel/relion/viewers
2020-10-08T12:08:53,523   copying build/lib/relion/viewers/viewer_base.py -> build/bdist.linux-armv7l/wheel/relion/viewers
2020-10-08T12:08:53,533   copying build/lib/relion/viewers/viewer_motioncor.py -> build/bdist.linux-armv7l/wheel/relion/viewers
2020-10-08T12:08:53,541   creating build/bdist.linux-armv7l/wheel/relion/convert
2020-10-08T12:08:53,544   copying build/lib/relion/convert/convert_coordinates.py -> build/bdist.linux-armv7l/wheel/relion/convert
2020-10-08T12:08:53,552   copying build/lib/relion/convert/convert_base.py -> build/bdist.linux-armv7l/wheel/relion/convert
2020-10-08T12:08:53,558   copying build/lib/relion/convert/convert_utils.py -> build/bdist.linux-armv7l/wheel/relion/convert
2020-10-08T12:08:53,565   copying build/lib/relion/convert/__init__.py -> build/bdist.linux-armv7l/wheel/relion/convert
2020-10-08T12:08:53,572   copying build/lib/relion/convert/convert_deprecated.py -> build/bdist.linux-armv7l/wheel/relion/convert
2020-10-08T12:08:53,583   creating build/bdist.linux-armv7l/wheel/relion/convert/mtfs
2020-10-08T12:08:53,585   copying build/lib/relion/convert/mtfs/mtf_f3_300_ec.star -> build/bdist.linux-armv7l/wheel/relion/convert/mtfs
2020-10-08T12:08:53,590   copying build/lib/relion/convert/mtfs/mtf_f3_200_ec.star -> build/bdist.linux-armv7l/wheel/relion/convert/mtfs
2020-10-08T12:08:53,594   copying build/lib/relion/convert/mtfs/mtf_k2_300_ec.star -> build/bdist.linux-armv7l/wheel/relion/convert/mtfs
2020-10-08T12:08:53,600   copying build/lib/relion/convert/mtfs/mtf_f2_300.star -> build/bdist.linux-armv7l/wheel/relion/convert/mtfs
2020-10-08T12:08:53,607   copying build/lib/relion/convert/mtfs/mtf_de20_300.star -> build/bdist.linux-armv7l/wheel/relion/convert/mtfs
2020-10-08T12:08:53,614   copying build/lib/relion/convert/dataimport.py -> build/bdist.linux-armv7l/wheel/relion/convert
2020-10-08T12:08:53,622   copying build/lib/relion/convert/convert30.py -> build/bdist.linux-armv7l/wheel/relion/convert
2020-10-08T12:08:53,628   copying build/lib/relion/convert/convert31.py -> build/bdist.linux-armv7l/wheel/relion/convert
2020-10-08T12:08:53,637   copying build/lib/relion/objects.py -> build/bdist.linux-armv7l/wheel/relion
2020-10-08T12:08:53,645   creating build/bdist.linux-armv7l/wheel/relion/tests
2020-10-08T12:08:53,647   copying build/lib/relion/tests/test_convert_relion.py -> build/bdist.linux-armv7l/wheel/relion/tests
2020-10-08T12:08:53,655   copying build/lib/relion/tests/__init__.py -> build/bdist.linux-armv7l/wheel/relion/tests
2020-10-08T12:08:53,659   copying build/lib/relion/tests/test_workflow_relion3.py -> build/bdist.linux-armv7l/wheel/relion/tests
2020-10-08T12:08:53,665   copying build/lib/relion/tests/test_protocols_relion3.py -> build/bdist.linux-armv7l/wheel/relion/tests
2020-10-08T12:08:53,672   copying build/lib/relion/tests/test_protocols_relion.py -> build/bdist.linux-armv7l/wheel/relion/tests
2020-10-08T12:08:53,683   running install_egg_info
2020-10-08T12:08:53,731   running egg_info
2020-10-08T12:08:53,733   writing dependency_links to scipion_em_relion.egg-info/dependency_links.txt
2020-10-08T12:08:53,736   writing entry points to scipion_em_relion.egg-info/entry_points.txt
2020-10-08T12:08:53,738   writing top-level names to scipion_em_relion.egg-info/top_level.txt
2020-10-08T12:08:53,740   writing requirements to scipion_em_relion.egg-info/requires.txt
2020-10-08T12:08:53,742   writing scipion_em_relion.egg-info/PKG-INFO
2020-10-08T12:08:53,776   reading manifest file 'scipion_em_relion.egg-info/SOURCES.txt'
2020-10-08T12:08:53,783   reading manifest template 'MANIFEST.in'
2020-10-08T12:08:53,802   writing manifest file 'scipion_em_relion.egg-info/SOURCES.txt'
2020-10-08T12:08:53,805   Copying scipion_em_relion.egg-info to build/bdist.linux-armv7l/wheel/scipion_em_relion-3.0.0b3-py3.5.egg-info
2020-10-08T12:08:53,838   running install_scripts
2020-10-08T12:08:54,024   creating build/bdist.linux-armv7l/wheel/scipion_em_relion-3.0.0b3.dist-info/WHEEL
2020-10-08T12:08:54,633   Building wheel for scipion-em-relion (setup.py): finished with status 'done'
2020-10-08T12:08:54,641   Created wheel for scipion-em-relion: filename=scipion_em_relion-3.0.0b3-py3-none-any.whl size=243261 sha256=4936f8b65b4eea66b499a25bc266c875cc94e04db3d77aceb9253b28222d937e
2020-10-08T12:08:54,642   Stored in directory: /tmp/pip-ephem-wheel-cache-nz759rkp/wheels/eb/b2/26/a77f1700479a354c03370de9fc693c12dda2aa982e8aab0522
2020-10-08T12:08:54,647 Successfully built scipion-em-relion
2020-10-08T12:08:54,699 Removed build tracker: '/tmp/pip-req-tracker-9rl_ki1_'