2020-10-21T14:43:24,569 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-10-21T14:43:25,240 Created temporary directory: /tmp/pip-ephem-wheel-cache-54yyupfg
2020-10-21T14:43:25,245 Created temporary directory: /tmp/pip-req-tracker-pqlqy146
2020-10-21T14:43:25,246 Initialized build tracking at /tmp/pip-req-tracker-pqlqy146
2020-10-21T14:43:25,246 Created build tracker: /tmp/pip-req-tracker-pqlqy146
2020-10-21T14:43:25,247 Entered build tracker: /tmp/pip-req-tracker-pqlqy146
2020-10-21T14:43:25,248 Created temporary directory: /tmp/pip-wheel-54iq27dk
2020-10-21T14:43:25,267 Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com
2020-10-21T14:43:25,270 2 location(s) to search for versions of rcsb-utils-chem:
2020-10-21T14:43:25,270 * https://pypi.org/simple/rcsb-utils-chem/
2020-10-21T14:43:25,270 * https://pypi.ngc.nvidia.com/rcsb-utils-chem/
2020-10-21T14:43:25,270 Fetching project page and analyzing links: https://pypi.org/simple/rcsb-utils-chem/
2020-10-21T14:43:25,273 Getting page https://pypi.org/simple/rcsb-utils-chem/
2020-10-21T14:43:25,277 Found index url https://pypi.org/simple
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2020-10-21T14:43:25,728   Found link https://files.pythonhosted.org/packages/0a/98/5bcd260d4335b0ceffe55f07718a88be892c1cb35bf581cebd1dbb3f7e57/rcsb.utils.chem-0.39-py2.py3-none-any.whl#sha256=160d09164c094b17ab74226ad917af500c05c30f4d5f9e6ea705ed17a732f367 (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.39
2020-10-21T14:43:25,729   Found link https://files.pythonhosted.org/packages/23/70/31a548e2597ba4673b3175b995e181b623e4c747e37c17df2ca582254f55/rcsb.utils.chem-0.39.tar.gz#sha256=3dc0a2b82a1f87025a5ade1c79734ec98a51edd9c33dfeaac7e9bd53050c8887 (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.39
2020-10-21T14:43:25,731   Found link https://files.pythonhosted.org/packages/16/1d/3890ea594852c3e66b9477c5f63add9d5581117f98a32c05ee3cd9e66f86/rcsb.utils.chem-0.40-py2.py3-none-any.whl#sha256=18e628af1e06a49c78f2dc312c9e3609ef21667559f6208788ae735952ebbfe5 (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.40
2020-10-21T14:43:25,731   Found link https://files.pythonhosted.org/packages/ae/6e/b68046b1cc8f0f7c3f462d2591ec63061e8fb6cd17ab41bab3d60661b792/rcsb.utils.chem-0.40.tar.gz#sha256=dfb8d44085326ad310fb773c776317420b592bf63a8b449381bf79293ff0479b (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.40
2020-10-21T14:43:25,733   Found link https://files.pythonhosted.org/packages/32/55/ef2b128f8fb60a0b8ca1c7c8ee2ef5925b52664e8a2eb04271c26f45b4be/rcsb.utils.chem-0.41-py2.py3-none-any.whl#sha256=17437217dd8bbabf4ed399a27a647a0cd53405037966e0e4322ac90994abf505 (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.41
2020-10-21T14:43:25,733   Found link https://files.pythonhosted.org/packages/66/e5/53afaa02860c8eff39ff2c8931ced37f4ff2c3f53ec2e39d6dde071bdeb6/rcsb.utils.chem-0.41.tar.gz#sha256=af8a785c4b421d96cc12558add6109fbf1d4214c8b3973cbe66e9f027ca962c2 (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.41
2020-10-21T14:43:25,734   Found link https://files.pythonhosted.org/packages/48/b4/e4302c54cb810233dc0fd8b98be5e0fc89e5fc8b6a7f3bcdd12897efacf1/rcsb.utils.chem-0.42.tar.gz#sha256=f4d0f409dff8510e5193127c0da4882443860ee4e4084ac9a5ecc6ecdf2d9e74 (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.42
2020-10-21T14:43:25,735 Fetching project page and analyzing links: https://pypi.ngc.nvidia.com/rcsb-utils-chem/
2020-10-21T14:43:25,736 Getting page https://pypi.ngc.nvidia.com/rcsb-utils-chem/
2020-10-21T14:43:25,739 Found index url https://pypi.ngc.nvidia.com
2020-10-21T14:43:26,582 Could not fetch URL https://pypi.ngc.nvidia.com/rcsb-utils-chem/: 404 Client Error: Not Found for url: https://developer.download.nvidia.com/compute/redist/rcsb-utils-chem/ - skipping
2020-10-21T14:43:26,615 Given no hashes to check 1 links for project 'rcsb-utils-chem': discarding no candidates
2020-10-21T14:43:26,618 Using version 0.42 (newest of versions: 0.42)
2020-10-21T14:43:26,627 Collecting rcsb-utils-chem==0.42
2020-10-21T14:43:26,632   Created temporary directory: /tmp/pip-unpack-je93hpet
2020-10-21T14:43:26,862   Downloading rcsb.utils.chem-0.42.tar.gz (64 kB)
2020-10-21T14:43:27,209   Added rcsb-utils-chem==0.42 from https://files.pythonhosted.org/packages/48/b4/e4302c54cb810233dc0fd8b98be5e0fc89e5fc8b6a7f3bcdd12897efacf1/rcsb.utils.chem-0.42.tar.gz#sha256=f4d0f409dff8510e5193127c0da4882443860ee4e4084ac9a5ecc6ecdf2d9e74 to build tracker '/tmp/pip-req-tracker-pqlqy146'
2020-10-21T14:43:27,212     Running setup.py (path:/tmp/pip-wheel-54iq27dk/rcsb-utils-chem/setup.py) egg_info for package rcsb-utils-chem
2020-10-21T14:43:27,215     Created temporary directory: /tmp/pip-pip-egg-info-4dpzo5tm
2020-10-21T14:43:27,216     Running command python setup.py egg_info
2020-10-21T14:43:29,398     running egg_info
2020-10-21T14:43:29,405     creating /tmp/pip-pip-egg-info-4dpzo5tm/rcsb.utils.chem.egg-info
2020-10-21T14:43:29,407     writing dependency_links to /tmp/pip-pip-egg-info-4dpzo5tm/rcsb.utils.chem.egg-info/dependency_links.txt
2020-10-21T14:43:29,411     writing requirements to /tmp/pip-pip-egg-info-4dpzo5tm/rcsb.utils.chem.egg-info/requires.txt
2020-10-21T14:43:29,413     writing top-level names to /tmp/pip-pip-egg-info-4dpzo5tm/rcsb.utils.chem.egg-info/top_level.txt
2020-10-21T14:43:29,416     writing /tmp/pip-pip-egg-info-4dpzo5tm/rcsb.utils.chem.egg-info/PKG-INFO
2020-10-21T14:43:29,421     writing entry points to /tmp/pip-pip-egg-info-4dpzo5tm/rcsb.utils.chem.egg-info/entry_points.txt
2020-10-21T14:43:29,425     writing manifest file '/tmp/pip-pip-egg-info-4dpzo5tm/rcsb.utils.chem.egg-info/SOURCES.txt'
2020-10-21T14:43:29,805     reading manifest file '/tmp/pip-pip-egg-info-4dpzo5tm/rcsb.utils.chem.egg-info/SOURCES.txt'
2020-10-21T14:43:29,808     reading manifest template 'MANIFEST.in'
2020-10-21T14:43:29,817     writing manifest file '/tmp/pip-pip-egg-info-4dpzo5tm/rcsb.utils.chem.egg-info/SOURCES.txt'
2020-10-21T14:43:29,951   Source in /tmp/pip-wheel-54iq27dk/rcsb-utils-chem has version 0.42, which satisfies requirement rcsb-utils-chem==0.42 from https://files.pythonhosted.org/packages/48/b4/e4302c54cb810233dc0fd8b98be5e0fc89e5fc8b6a7f3bcdd12897efacf1/rcsb.utils.chem-0.42.tar.gz#sha256=f4d0f409dff8510e5193127c0da4882443860ee4e4084ac9a5ecc6ecdf2d9e74
2020-10-21T14:43:29,952   Removed rcsb-utils-chem==0.42 from https://files.pythonhosted.org/packages/48/b4/e4302c54cb810233dc0fd8b98be5e0fc89e5fc8b6a7f3bcdd12897efacf1/rcsb.utils.chem-0.42.tar.gz#sha256=f4d0f409dff8510e5193127c0da4882443860ee4e4084ac9a5ecc6ecdf2d9e74 from build tracker '/tmp/pip-req-tracker-pqlqy146'
2020-10-21T14:43:29,956 Building wheels for collected packages: rcsb-utils-chem
2020-10-21T14:43:29,965   Created temporary directory: /tmp/pip-wheel-1cvk6u2f
2020-10-21T14:43:29,967   Building wheel for rcsb-utils-chem (setup.py): started
2020-10-21T14:43:29,967   Destination directory: /tmp/pip-wheel-1cvk6u2f
2020-10-21T14:43:29,968   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-54iq27dk/rcsb-utils-chem/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-54iq27dk/rcsb-utils-chem/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-1cvk6u2f
2020-10-21T14:43:32,187   running bdist_wheel
2020-10-21T14:43:32,202   running build
2020-10-21T14:43:32,203   running build_py
2020-10-21T14:43:32,539   creating build
2020-10-21T14:43:32,540   creating build/lib
2020-10-21T14:43:32,542   creating build/lib/rcsb
2020-10-21T14:43:32,545   copying rcsb/__init__.py -> build/lib/rcsb
2020-10-21T14:43:32,551   creating build/lib/rcsb/utils
2020-10-21T14:43:32,552   copying rcsb/utils/__init__.py -> build/lib/rcsb/utils
2020-10-21T14:43:32,560   creating build/lib/rcsb/utils/chem
2020-10-21T14:43:32,563   copying rcsb/utils/chem/ObMoleculeFactory.py -> build/lib/rcsb/utils/chem
2020-10-21T14:43:32,571   copying rcsb/utils/chem/RdMoleculeFactory.py -> build/lib/rcsb/utils/chem
2020-10-21T14:43:32,578   copying rcsb/utils/chem/OeIoUtils.py -> build/lib/rcsb/utils/chem
2020-10-21T14:43:32,587   copying rcsb/utils/chem/IoUtils.py -> build/lib/rcsb/utils/chem
2020-10-21T14:43:32,594   copying rcsb/utils/chem/ChemCompMoleculeProvider.py -> build/lib/rcsb/utils/chem
2020-10-21T14:43:32,601   copying rcsb/utils/chem/OeSearchMoleculeProvider.py -> build/lib/rcsb/utils/chem
2020-10-21T14:43:32,608   copying rcsb/utils/chem/ChemCompSearchIndexProvider.py -> build/lib/rcsb/utils/chem
2020-10-21T14:43:32,616   copying rcsb/utils/chem/OeMoleculeFactory.py -> build/lib/rcsb/utils/chem
2020-10-21T14:43:32,627   copying rcsb/utils/chem/OeDepict.py -> build/lib/rcsb/utils/chem
2020-10-21T14:43:32,634   copying rcsb/utils/chem/ChemCompSearchWrapper.py -> build/lib/rcsb/utils/chem
2020-10-21T14:43:32,642   copying rcsb/utils/chem/ChemCompIndexProvider.py -> build/lib/rcsb/utils/chem
2020-10-21T14:43:32,648   copying rcsb/utils/chem/OeMoleculeProvider.py -> build/lib/rcsb/utils/chem
2020-10-21T14:43:32,654   copying rcsb/utils/chem/CactvsMoleculeFactory.py -> build/lib/rcsb/utils/chem
2020-10-21T14:43:32,659   copying rcsb/utils/chem/OeSubStructSearchUtils.py -> build/lib/rcsb/utils/chem
2020-10-21T14:43:32,666   copying rcsb/utils/chem/cactvsAnnotateMol.py -> build/lib/rcsb/utils/chem
2020-10-21T14:43:32,672   copying rcsb/utils/chem/OeDepictAlign.py -> build/lib/rcsb/utils/chem
2020-10-21T14:43:32,682   copying rcsb/utils/chem/__init__.py -> build/lib/rcsb/utils/chem
2020-10-21T14:43:32,686   copying rcsb/utils/chem/MolecularFormula.py -> build/lib/rcsb/utils/chem
2020-10-21T14:43:32,691   copying rcsb/utils/chem/ChemCompDepictWrapper.py -> build/lib/rcsb/utils/chem
2020-10-21T14:43:32,696   copying rcsb/utils/chem/OeSearchUtils.py -> build/lib/rcsb/utils/chem
2020-10-21T14:43:32,702   copying rcsb/utils/chem/FailList.py -> build/lib/rcsb/utils/chem
2020-10-21T14:43:32,716   copying rcsb/utils/chem/PdbxChemCompConstants.py -> build/lib/rcsb/utils/chem
2020-10-21T14:43:32,720   copying rcsb/utils/chem/MoleculeAnnotationsCompare.py -> build/lib/rcsb/utils/chem
2020-10-21T14:43:32,726   copying rcsb/utils/chem/PdbxChemComp.py -> build/lib/rcsb/utils/chem
2020-10-21T14:43:32,754   installing to build/bdist.linux-armv7l/wheel
2020-10-21T14:43:32,755   running install
2020-10-21T14:43:32,757   running install_lib
2020-10-21T14:43:32,765   creating build/bdist.linux-armv7l
2020-10-21T14:43:32,765   creating build/bdist.linux-armv7l/wheel
2020-10-21T14:43:32,769   creating build/bdist.linux-armv7l/wheel/rcsb
2020-10-21T14:43:32,774   creating build/bdist.linux-armv7l/wheel/rcsb/utils
2020-10-21T14:43:32,776   copying build/lib/rcsb/utils/__init__.py -> build/bdist.linux-armv7l/wheel/rcsb/utils
2020-10-21T14:43:32,783   creating build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-21T14:43:32,785   copying build/lib/rcsb/utils/chem/ObMoleculeFactory.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-21T14:43:32,790   copying build/lib/rcsb/utils/chem/RdMoleculeFactory.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-21T14:43:32,795   copying build/lib/rcsb/utils/chem/OeIoUtils.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-21T14:43:32,803   copying build/lib/rcsb/utils/chem/IoUtils.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-21T14:43:32,809   copying build/lib/rcsb/utils/chem/ChemCompMoleculeProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-21T14:43:32,816   copying build/lib/rcsb/utils/chem/OeSearchMoleculeProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-21T14:43:32,823   copying build/lib/rcsb/utils/chem/ChemCompSearchIndexProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-21T14:43:32,830   copying build/lib/rcsb/utils/chem/OeMoleculeFactory.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-21T14:43:32,841   copying build/lib/rcsb/utils/chem/OeDepict.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-21T14:43:32,848   copying build/lib/rcsb/utils/chem/ChemCompSearchWrapper.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-21T14:43:32,857   copying build/lib/rcsb/utils/chem/ChemCompIndexProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-21T14:43:32,864   copying build/lib/rcsb/utils/chem/OeMoleculeProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-21T14:43:32,871   copying build/lib/rcsb/utils/chem/CactvsMoleculeFactory.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-21T14:43:32,877   copying build/lib/rcsb/utils/chem/OeSubStructSearchUtils.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-21T14:43:32,884   copying build/lib/rcsb/utils/chem/cactvsAnnotateMol.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-21T14:43:32,890   copying build/lib/rcsb/utils/chem/OeDepictAlign.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-21T14:43:32,901   copying build/lib/rcsb/utils/chem/__init__.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-21T14:43:32,906   copying build/lib/rcsb/utils/chem/MolecularFormula.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-21T14:43:32,912   copying build/lib/rcsb/utils/chem/ChemCompDepictWrapper.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-21T14:43:32,919   copying build/lib/rcsb/utils/chem/OeSearchUtils.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-21T14:43:32,927   copying build/lib/rcsb/utils/chem/FailList.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-21T14:43:32,942   copying build/lib/rcsb/utils/chem/PdbxChemCompConstants.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-21T14:43:32,948   copying build/lib/rcsb/utils/chem/MoleculeAnnotationsCompare.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-21T14:43:32,955   copying build/lib/rcsb/utils/chem/PdbxChemComp.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-21T14:43:32,963   copying build/lib/rcsb/__init__.py -> build/bdist.linux-armv7l/wheel/rcsb
2020-10-21T14:43:32,968   running install_egg_info
2020-10-21T14:43:33,024   running egg_info
2020-10-21T14:43:33,026   writing entry points to rcsb.utils.chem.egg-info/entry_points.txt
2020-10-21T14:43:33,029   writing top-level names to rcsb.utils.chem.egg-info/top_level.txt
2020-10-21T14:43:33,031   writing rcsb.utils.chem.egg-info/PKG-INFO
2020-10-21T14:43:33,035   writing dependency_links to rcsb.utils.chem.egg-info/dependency_links.txt
2020-10-21T14:43:33,038   writing requirements to rcsb.utils.chem.egg-info/requires.txt
2020-10-21T14:43:33,052   reading manifest file 'rcsb.utils.chem.egg-info/SOURCES.txt'
2020-10-21T14:43:33,057   reading manifest template 'MANIFEST.in'
2020-10-21T14:43:33,067   writing manifest file 'rcsb.utils.chem.egg-info/SOURCES.txt'
2020-10-21T14:43:33,070   Copying rcsb.utils.chem.egg-info to build/bdist.linux-armv7l/wheel/rcsb.utils.chem-0.42-py3.5.egg-info
2020-10-21T14:43:33,110   running install_scripts
2020-10-21T14:43:33,338   creating build/bdist.linux-armv7l/wheel/rcsb.utils.chem-0.42.dist-info/WHEEL
2020-10-21T14:43:33,714   Building wheel for rcsb-utils-chem (setup.py): finished with status 'done'
2020-10-21T14:43:33,720   Created wheel for rcsb-utils-chem: filename=rcsb.utils.chem-0.42-py2.py3-none-any.whl size=81633 sha256=3c1888b87cb64c5f640781b38687da2e710203fc7237c12a80e16d46556743c6
2020-10-21T14:43:33,721   Stored in directory: /tmp/pip-ephem-wheel-cache-54yyupfg/wheels/f0/73/41/89f49dd35d28a1760f2332d13c39922cb9585bdd5f97ce18ab
2020-10-21T14:43:33,725 Successfully built rcsb-utils-chem
2020-10-21T14:43:33,745 Removed build tracker: '/tmp/pip-req-tracker-pqlqy146'