2020-10-23T10:43:06,451 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-10-23T10:43:07,120 Created temporary directory: /tmp/pip-ephem-wheel-cache-qq0pzskp
2020-10-23T10:43:07,125 Created temporary directory: /tmp/pip-req-tracker-z28uabcv
2020-10-23T10:43:07,126 Initialized build tracking at /tmp/pip-req-tracker-z28uabcv
2020-10-23T10:43:07,126 Created build tracker: /tmp/pip-req-tracker-z28uabcv
2020-10-23T10:43:07,127 Entered build tracker: /tmp/pip-req-tracker-z28uabcv
2020-10-23T10:43:07,128 Created temporary directory: /tmp/pip-wheel-hkpap43q
2020-10-23T10:43:07,145 1 location(s) to search for versions of smallrnaseq:
2020-10-23T10:43:07,145 * https://pypi.org/simple/smallrnaseq/
2020-10-23T10:43:07,146 Fetching project page and analyzing links: https://pypi.org/simple/smallrnaseq/
2020-10-23T10:43:07,148 Getting page https://pypi.org/simple/smallrnaseq/
2020-10-23T10:43:07,152 Found index url https://pypi.org/simple
2020-10-23T10:43:07,476   Found link https://files.pythonhosted.org/packages/ea/3b/aa2438bd86e7b1e6d7d498766d2bf50e89383eaf36a5cb9cdbd2afafb7b1/smallrnaseq-0.2.0.tar.gz#sha256=cb227f4acc3a0469e857d3adf9df165b6031d98b5f9236439d27689ff22704c9 (from https://pypi.org/simple/smallrnaseq/), version: 0.2.0
2020-10-23T10:43:07,477   Found link https://files.pythonhosted.org/packages/6c/b9/f5965bff78674784d666faeb7f5b8d3c6eeac79786d0e0dd5d54c98db38b/smallrnaseq-0.2.1.tar.gz#sha256=9c7f40a2730b1492fd6e04b606677bed27ee374a7bf3605f234093774538b061 (from https://pypi.org/simple/smallrnaseq/), version: 0.2.1
2020-10-23T10:43:07,478   Found link https://files.pythonhosted.org/packages/6e/a8/1351fc1615e6435806f84379ed302e269b1c0a3677f20c7c1b03326bdb37/smallrnaseq-0.3.0.tar.gz#sha256=63966f2a89e96c3e1b9ba4de772c2a0eff5b49520eea89538ad07f1e320bcc04 (from https://pypi.org/simple/smallrnaseq/), version: 0.3.0
2020-10-23T10:43:07,478   Found link https://files.pythonhosted.org/packages/c6/02/4ebab2146e486371c92d48db989794a6294ddfcbad2d6fc36a1c7732ff49/smallrnaseq-0.4.0.tar.gz#sha256=59b1972475d8e8a064fc5a5037f8113b6479fefe4c8dc473ad790adef990b956 (from https://pypi.org/simple/smallrnaseq/), version: 0.4.0
2020-10-23T10:43:07,479   Found link https://files.pythonhosted.org/packages/f5/e3/359edd13212021f14387858f5e64adfb252bab4c49c5d257890748703570/smallrnaseq-0.5.0.tar.gz#sha256=c3e84f3a51c220a20a1b6f697f56d4e0e50fa35c83a186747d1e8570b211b005 (from https://pypi.org/simple/smallrnaseq/), version: 0.5.0
2020-10-23T10:43:07,480   Found link https://files.pythonhosted.org/packages/20/29/c8025d11f8bb50d9f063a2dc90a481d616753ae3caf30cdf78a2c89153e8/smallrnaseq-0.6.0.tar.gz#sha256=8b4bf8d497a75696413810d1adc67ecf01e7842676d5fdb215a23ba232756b4f (from https://pypi.org/simple/smallrnaseq/), version: 0.6.0
2020-10-23T10:43:07,491 Given no hashes to check 1 links for project 'smallrnaseq': discarding no candidates
2020-10-23T10:43:07,493 Using version 0.6.0 (newest of versions: 0.6.0)
2020-10-23T10:43:07,501 Collecting smallrnaseq==0.6.0
2020-10-23T10:43:07,506   Created temporary directory: /tmp/pip-unpack-7swvupb9
2020-10-23T10:43:07,966   Downloading smallrnaseq-0.6.0.tar.gz (6.7 MB)
2020-10-23T10:43:13,466   Added smallrnaseq==0.6.0 from https://files.pythonhosted.org/packages/20/29/c8025d11f8bb50d9f063a2dc90a481d616753ae3caf30cdf78a2c89153e8/smallrnaseq-0.6.0.tar.gz#sha256=8b4bf8d497a75696413810d1adc67ecf01e7842676d5fdb215a23ba232756b4f to build tracker '/tmp/pip-req-tracker-z28uabcv'
2020-10-23T10:43:13,471     Running setup.py (path:/tmp/pip-wheel-hkpap43q/smallrnaseq/setup.py) egg_info for package smallrnaseq
2020-10-23T10:43:13,473     Created temporary directory: /tmp/pip-pip-egg-info-pvr2a0m2
2020-10-23T10:43:13,474     Running command python setup.py egg_info
2020-10-23T10:43:15,689     running egg_info
2020-10-23T10:43:15,695     creating /tmp/pip-pip-egg-info-pvr2a0m2/smallrnaseq.egg-info
2020-10-23T10:43:15,698     writing /tmp/pip-pip-egg-info-pvr2a0m2/smallrnaseq.egg-info/PKG-INFO
2020-10-23T10:43:15,704     writing dependency_links to /tmp/pip-pip-egg-info-pvr2a0m2/smallrnaseq.egg-info/dependency_links.txt
2020-10-23T10:43:15,706     writing requirements to /tmp/pip-pip-egg-info-pvr2a0m2/smallrnaseq.egg-info/requires.txt
2020-10-23T10:43:15,709     writing top-level names to /tmp/pip-pip-egg-info-pvr2a0m2/smallrnaseq.egg-info/top_level.txt
2020-10-23T10:43:15,711     writing entry points to /tmp/pip-pip-egg-info-pvr2a0m2/smallrnaseq.egg-info/entry_points.txt
2020-10-23T10:43:15,716     writing manifest file '/tmp/pip-pip-egg-info-pvr2a0m2/smallrnaseq.egg-info/SOURCES.txt'
2020-10-23T10:43:16,093     reading manifest file '/tmp/pip-pip-egg-info-pvr2a0m2/smallrnaseq.egg-info/SOURCES.txt'
2020-10-23T10:43:16,104     writing manifest file '/tmp/pip-pip-egg-info-pvr2a0m2/smallrnaseq.egg-info/SOURCES.txt'
2020-10-23T10:43:16,238   Source in /tmp/pip-wheel-hkpap43q/smallrnaseq has version 0.6.0, which satisfies requirement smallrnaseq==0.6.0 from https://files.pythonhosted.org/packages/20/29/c8025d11f8bb50d9f063a2dc90a481d616753ae3caf30cdf78a2c89153e8/smallrnaseq-0.6.0.tar.gz#sha256=8b4bf8d497a75696413810d1adc67ecf01e7842676d5fdb215a23ba232756b4f
2020-10-23T10:43:16,240   Removed smallrnaseq==0.6.0 from https://files.pythonhosted.org/packages/20/29/c8025d11f8bb50d9f063a2dc90a481d616753ae3caf30cdf78a2c89153e8/smallrnaseq-0.6.0.tar.gz#sha256=8b4bf8d497a75696413810d1adc67ecf01e7842676d5fdb215a23ba232756b4f from build tracker '/tmp/pip-req-tracker-z28uabcv'
2020-10-23T10:43:16,243 Building wheels for collected packages: smallrnaseq
2020-10-23T10:43:16,252   Created temporary directory: /tmp/pip-wheel-iynxlq7c
2020-10-23T10:43:16,253   Building wheel for smallrnaseq (setup.py): started
2020-10-23T10:43:16,254   Destination directory: /tmp/pip-wheel-iynxlq7c
2020-10-23T10:43:16,254   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-hkpap43q/smallrnaseq/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-hkpap43q/smallrnaseq/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-iynxlq7c
2020-10-23T10:43:18,456   running bdist_wheel
2020-10-23T10:43:18,471   running build
2020-10-23T10:43:18,472   running build_py
2020-10-23T10:43:18,813   creating build
2020-10-23T10:43:18,814   creating build/lib
2020-10-23T10:43:18,816   creating build/lib/smallrnaseq
2020-10-23T10:43:18,819   copying smallrnaseq/ensembl.py -> build/lib/smallrnaseq
2020-10-23T10:43:18,824   copying smallrnaseq/aligners.py -> build/lib/smallrnaseq
2020-10-23T10:43:18,829   copying smallrnaseq/config.py -> build/lib/smallrnaseq
2020-10-23T10:43:18,834   copying smallrnaseq/utils.py -> build/lib/smallrnaseq
2020-10-23T10:43:18,842   copying smallrnaseq/mirdeep2.py -> build/lib/smallrnaseq
2020-10-23T10:43:18,849   copying smallrnaseq/trf.py -> build/lib/smallrnaseq
2020-10-23T10:43:18,856   copying smallrnaseq/plotting.py -> build/lib/smallrnaseq
2020-10-23T10:43:18,862   copying smallrnaseq/novel.py -> build/lib/smallrnaseq
2020-10-23T10:43:18,871   copying smallrnaseq/tests.py -> build/lib/smallrnaseq
2020-10-23T10:43:18,877   copying smallrnaseq/analysis.py -> build/lib/smallrnaseq
2020-10-23T10:43:18,884   copying smallrnaseq/__init__.py -> build/lib/smallrnaseq
2020-10-23T10:43:18,889   copying smallrnaseq/de.py -> build/lib/smallrnaseq
2020-10-23T10:43:18,896   copying smallrnaseq/srnabench.py -> build/lib/smallrnaseq
2020-10-23T10:43:18,903   copying smallrnaseq/app.py -> build/lib/smallrnaseq
2020-10-23T10:43:18,911   copying smallrnaseq/base.py -> build/lib/smallrnaseq
2020-10-23T10:43:18,936   creating build/lib/smallrnaseq/data
2020-10-23T10:43:18,938   copying smallrnaseq/data/test_collapsed.fa -> build/lib/smallrnaseq/data
2020-10-23T10:43:19,137   copying smallrnaseq/data/bovine_plasma_sample.fastq -> build/lib/smallrnaseq/data
2020-10-23T10:43:19,354   copying smallrnaseq/data/styles.css -> build/lib/smallrnaseq/data
2020-10-23T10:43:19,360   copying smallrnaseq/data/training_positives.csv -> build/lib/smallrnaseq/data
2020-10-23T10:43:19,382   copying smallrnaseq/data/bosTau8-tRNAs.fa -> build/lib/smallrnaseq/data
2020-10-23T10:43:19,448   copying smallrnaseq/data/ensembl_names.csv -> build/lib/smallrnaseq/data
2020-10-23T10:43:19,456   copying smallrnaseq/data/training_negatives.csv -> build/lib/smallrnaseq/data
2020-10-23T10:43:19,490   copying smallrnaseq/data/premirna_model.joblib -> build/lib/smallrnaseq/data
2020-10-23T10:43:19,696   copying smallrnaseq/data/bovine_serum_sample.fastq -> build/lib/smallrnaseq/data
2020-10-23T10:43:19,842   copying smallrnaseq/data/miRBase_all.csv -> build/lib/smallrnaseq/data
2020-10-23T10:43:20,568   copying smallrnaseq/data/miRBase_all_old.csv -> build/lib/smallrnaseq/data
2020-10-23T10:43:21,122   copying smallrnaseq/data/bosTau8-tRNAs.log -> build/lib/smallrnaseq/data
2020-10-23T10:43:21,127   copying smallrnaseq/data/test.sam -> build/lib/smallrnaseq/data
2020-10-23T10:43:21,194   copying smallrnaseq/data/bovine_serum_sample_collapsed.csv -> build/lib/smallrnaseq/data
2020-10-23T10:43:21,207   copying smallrnaseq/data/test_counts.csv -> build/lib/smallrnaseq/data
2020-10-23T10:43:21,219   copying smallrnaseq/data/bovine_serum_sample_collapsed.fa -> build/lib/smallrnaseq/data
2020-10-23T10:43:21,234   creating build/lib/smallrnaseq/data/de_example
2020-10-23T10:43:21,237   copying smallrnaseq/data/de_example/phenodata.txt -> build/lib/smallrnaseq/data/de_example
2020-10-23T10:43:21,244   copying smallrnaseq/data/de_example/mirbase_mature_counts.csv -> build/lib/smallrnaseq/data/de_example
2020-10-23T10:43:21,273   copying smallrnaseq/DEanalysis.R -> build/lib/smallrnaseq
2020-10-23T10:43:21,279   copying smallrnaseq/Limma.R -> build/lib/smallrnaseq
2020-10-23T10:43:21,298   installing to build/bdist.linux-armv7l/wheel
2020-10-23T10:43:21,298   running install
2020-10-23T10:43:21,300   running install_lib
2020-10-23T10:43:21,308   creating build/bdist.linux-armv7l
2020-10-23T10:43:21,309   creating build/bdist.linux-armv7l/wheel
2020-10-23T10:43:21,313   creating build/bdist.linux-armv7l/wheel/smallrnaseq
2020-10-23T10:43:21,315   copying build/lib/smallrnaseq/ensembl.py -> build/bdist.linux-armv7l/wheel/smallrnaseq
2020-10-23T10:43:21,321   copying build/lib/smallrnaseq/aligners.py -> build/bdist.linux-armv7l/wheel/smallrnaseq
2020-10-23T10:43:21,327   creating build/bdist.linux-armv7l/wheel/smallrnaseq/data
2020-10-23T10:43:21,329   copying build/lib/smallrnaseq/data/test_collapsed.fa -> build/bdist.linux-armv7l/wheel/smallrnaseq/data
2020-10-23T10:43:21,534   creating build/bdist.linux-armv7l/wheel/smallrnaseq/data/de_example
2020-10-23T10:43:21,536   copying build/lib/smallrnaseq/data/de_example/phenodata.txt -> build/bdist.linux-armv7l/wheel/smallrnaseq/data/de_example
2020-10-23T10:43:21,541   copying build/lib/smallrnaseq/data/de_example/mirbase_mature_counts.csv -> build/bdist.linux-armv7l/wheel/smallrnaseq/data/de_example
2020-10-23T10:43:21,569   copying build/lib/smallrnaseq/data/bovine_plasma_sample.fastq -> build/bdist.linux-armv7l/wheel/smallrnaseq/data
2020-10-23T10:43:21,774   copying build/lib/smallrnaseq/data/styles.css -> build/bdist.linux-armv7l/wheel/smallrnaseq/data
2020-10-23T10:43:21,779   copying build/lib/smallrnaseq/data/training_positives.csv -> build/bdist.linux-armv7l/wheel/smallrnaseq/data
2020-10-23T10:43:21,797   copying build/lib/smallrnaseq/data/bosTau8-tRNAs.fa -> build/bdist.linux-armv7l/wheel/smallrnaseq/data
2020-10-23T10:43:21,862   copying build/lib/smallrnaseq/data/ensembl_names.csv -> build/bdist.linux-armv7l/wheel/smallrnaseq/data
2020-10-23T10:43:21,867   copying build/lib/smallrnaseq/data/training_negatives.csv -> build/bdist.linux-armv7l/wheel/smallrnaseq/data
2020-10-23T10:43:21,899   copying build/lib/smallrnaseq/data/premirna_model.joblib -> build/bdist.linux-armv7l/wheel/smallrnaseq/data
2020-10-23T10:43:22,107   copying build/lib/smallrnaseq/data/bovine_serum_sample.fastq -> build/bdist.linux-armv7l/wheel/smallrnaseq/data
2020-10-23T10:43:22,258   copying build/lib/smallrnaseq/data/miRBase_all.csv -> build/bdist.linux-armv7l/wheel/smallrnaseq/data
2020-10-23T10:43:22,983   copying build/lib/smallrnaseq/data/miRBase_all_old.csv -> build/bdist.linux-armv7l/wheel/smallrnaseq/data
2020-10-23T10:43:23,536   copying build/lib/smallrnaseq/data/bosTau8-tRNAs.log -> build/bdist.linux-armv7l/wheel/smallrnaseq/data
2020-10-23T10:43:23,541   copying build/lib/smallrnaseq/data/test.sam -> build/bdist.linux-armv7l/wheel/smallrnaseq/data
2020-10-23T10:43:23,607   copying build/lib/smallrnaseq/data/bovine_serum_sample_collapsed.csv -> build/bdist.linux-armv7l/wheel/smallrnaseq/data
2020-10-23T10:43:23,621   copying build/lib/smallrnaseq/data/test_counts.csv -> build/bdist.linux-armv7l/wheel/smallrnaseq/data
2020-10-23T10:43:23,634   copying build/lib/smallrnaseq/data/bovine_serum_sample_collapsed.fa -> build/bdist.linux-armv7l/wheel/smallrnaseq/data
2020-10-23T10:43:23,651   copying build/lib/smallrnaseq/config.py -> build/bdist.linux-armv7l/wheel/smallrnaseq
2020-10-23T10:43:23,659   copying build/lib/smallrnaseq/utils.py -> build/bdist.linux-armv7l/wheel/smallrnaseq
2020-10-23T10:43:23,669   copying build/lib/smallrnaseq/mirdeep2.py -> build/bdist.linux-armv7l/wheel/smallrnaseq
2020-10-23T10:43:23,678   copying build/lib/smallrnaseq/trf.py -> build/bdist.linux-armv7l/wheel/smallrnaseq
2020-10-23T10:43:23,686   copying build/lib/smallrnaseq/plotting.py -> build/bdist.linux-armv7l/wheel/smallrnaseq
2020-10-23T10:43:23,693   copying build/lib/smallrnaseq/novel.py -> build/bdist.linux-armv7l/wheel/smallrnaseq
2020-10-23T10:43:23,703   copying build/lib/smallrnaseq/tests.py -> build/bdist.linux-armv7l/wheel/smallrnaseq
2020-10-23T10:43:23,709   copying build/lib/smallrnaseq/analysis.py -> build/bdist.linux-armv7l/wheel/smallrnaseq
2020-10-23T10:43:23,716   copying build/lib/smallrnaseq/__init__.py -> build/bdist.linux-armv7l/wheel/smallrnaseq
2020-10-23T10:43:23,720   copying build/lib/smallrnaseq/de.py -> build/bdist.linux-armv7l/wheel/smallrnaseq
2020-10-23T10:43:23,726   copying build/lib/smallrnaseq/srnabench.py -> build/bdist.linux-armv7l/wheel/smallrnaseq
2020-10-23T10:43:23,732   copying build/lib/smallrnaseq/app.py -> build/bdist.linux-armv7l/wheel/smallrnaseq
2020-10-23T10:43:23,739   copying build/lib/smallrnaseq/DEanalysis.R -> build/bdist.linux-armv7l/wheel/smallrnaseq
2020-10-23T10:43:23,745   copying build/lib/smallrnaseq/base.py -> build/bdist.linux-armv7l/wheel/smallrnaseq
2020-10-23T10:43:23,754   copying build/lib/smallrnaseq/Limma.R -> build/bdist.linux-armv7l/wheel/smallrnaseq
2020-10-23T10:43:23,759   running install_egg_info
2020-10-23T10:43:23,809   running egg_info
2020-10-23T10:43:23,810   writing smallrnaseq.egg-info/PKG-INFO
2020-10-23T10:43:23,814   writing dependency_links to smallrnaseq.egg-info/dependency_links.txt
2020-10-23T10:43:23,817   writing entry points to smallrnaseq.egg-info/entry_points.txt
2020-10-23T10:43:23,820   writing top-level names to smallrnaseq.egg-info/top_level.txt
2020-10-23T10:43:23,823   writing requirements to smallrnaseq.egg-info/requires.txt
2020-10-23T10:43:23,841   reading manifest file 'smallrnaseq.egg-info/SOURCES.txt'
2020-10-23T10:43:23,867   writing manifest file 'smallrnaseq.egg-info/SOURCES.txt'
2020-10-23T10:43:23,870   Copying smallrnaseq.egg-info to build/bdist.linux-armv7l/wheel/smallrnaseq-0.6.0-py3.5.egg-info
2020-10-23T10:43:23,904   running install_scripts
2020-10-23T10:43:24,132   creating build/bdist.linux-armv7l/wheel/smallrnaseq-0.6.0.dist-info/WHEEL
2020-10-23T10:43:34,782   Building wheel for smallrnaseq (setup.py): finished with status 'done'
2020-10-23T10:43:34,902   Created wheel for smallrnaseq: filename=smallrnaseq-0.6.0-py3-none-any.whl size=6867686 sha256=0f9a27dc8f23700a4afc31c1d16ed0a734011468828da1b011b1f7607fafaffb
2020-10-23T10:43:34,902   Stored in directory: /tmp/pip-ephem-wheel-cache-qq0pzskp/wheels/8a/34/95/66af625a30d70aa41adf1b06d42d20fce1ce187f4d1353d85a
2020-10-23T10:43:34,907 Successfully built smallrnaseq
2020-10-23T10:43:36,105 Removed build tracker: '/tmp/pip-req-tracker-z28uabcv'