2020-10-23T17:51:02,721 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-10-23T17:51:03,401 Created temporary directory: /tmp/pip-ephem-wheel-cache-2wgm7plm
2020-10-23T17:51:03,406 Created temporary directory: /tmp/pip-req-tracker-jr5idg03
2020-10-23T17:51:03,406 Initialized build tracking at /tmp/pip-req-tracker-jr5idg03
2020-10-23T17:51:03,407 Created build tracker: /tmp/pip-req-tracker-jr5idg03
2020-10-23T17:51:03,407 Entered build tracker: /tmp/pip-req-tracker-jr5idg03
2020-10-23T17:51:03,409 Created temporary directory: /tmp/pip-wheel-633kpf1e
2020-10-23T17:51:03,428 Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com
2020-10-23T17:51:03,431 2 location(s) to search for versions of rcsb-utils-chem:
2020-10-23T17:51:03,431 * https://pypi.org/simple/rcsb-utils-chem/
2020-10-23T17:51:03,431 * https://pypi.ngc.nvidia.com/rcsb-utils-chem/
2020-10-23T17:51:03,432 Fetching project page and analyzing links: https://pypi.org/simple/rcsb-utils-chem/
2020-10-23T17:51:03,434 Getting page https://pypi.org/simple/rcsb-utils-chem/
2020-10-23T17:51:03,438 Found index url https://pypi.org/simple
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2020-10-23T17:51:03,892   Found link https://files.pythonhosted.org/packages/0a/98/5bcd260d4335b0ceffe55f07718a88be892c1cb35bf581cebd1dbb3f7e57/rcsb.utils.chem-0.39-py2.py3-none-any.whl#sha256=160d09164c094b17ab74226ad917af500c05c30f4d5f9e6ea705ed17a732f367 (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.39
2020-10-23T17:51:03,893   Found link https://files.pythonhosted.org/packages/23/70/31a548e2597ba4673b3175b995e181b623e4c747e37c17df2ca582254f55/rcsb.utils.chem-0.39.tar.gz#sha256=3dc0a2b82a1f87025a5ade1c79734ec98a51edd9c33dfeaac7e9bd53050c8887 (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.39
2020-10-23T17:51:03,894   Found link https://files.pythonhosted.org/packages/16/1d/3890ea594852c3e66b9477c5f63add9d5581117f98a32c05ee3cd9e66f86/rcsb.utils.chem-0.40-py2.py3-none-any.whl#sha256=18e628af1e06a49c78f2dc312c9e3609ef21667559f6208788ae735952ebbfe5 (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.40
2020-10-23T17:51:03,895   Found link https://files.pythonhosted.org/packages/ae/6e/b68046b1cc8f0f7c3f462d2591ec63061e8fb6cd17ab41bab3d60661b792/rcsb.utils.chem-0.40.tar.gz#sha256=dfb8d44085326ad310fb773c776317420b592bf63a8b449381bf79293ff0479b (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.40
2020-10-23T17:51:03,896   Found link https://files.pythonhosted.org/packages/32/55/ef2b128f8fb60a0b8ca1c7c8ee2ef5925b52664e8a2eb04271c26f45b4be/rcsb.utils.chem-0.41-py2.py3-none-any.whl#sha256=17437217dd8bbabf4ed399a27a647a0cd53405037966e0e4322ac90994abf505 (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.41
2020-10-23T17:51:03,897   Found link https://files.pythonhosted.org/packages/66/e5/53afaa02860c8eff39ff2c8931ced37f4ff2c3f53ec2e39d6dde071bdeb6/rcsb.utils.chem-0.41.tar.gz#sha256=af8a785c4b421d96cc12558add6109fbf1d4214c8b3973cbe66e9f027ca962c2 (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.41
2020-10-23T17:51:03,898   Found link https://files.pythonhosted.org/packages/48/b4/e4302c54cb810233dc0fd8b98be5e0fc89e5fc8b6a7f3bcdd12897efacf1/rcsb.utils.chem-0.42.tar.gz#sha256=f4d0f409dff8510e5193127c0da4882443860ee4e4084ac9a5ecc6ecdf2d9e74 (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.42
2020-10-23T17:51:03,899   Found link https://files.pythonhosted.org/packages/cc/17/dc085272edf1a807b80df64aa51a233b41305b863cf8de95e7b339c45d86/rcsb.utils.chem-0.43.tar.gz#sha256=7a529bde69e6dfaa1951bd9fb185d8cae922668c1c16f9dcbb7f794df2c0a051 (from https://pypi.org/simple/rcsb-utils-chem/), version: 0.43
2020-10-23T17:51:03,900 Fetching project page and analyzing links: https://pypi.ngc.nvidia.com/rcsb-utils-chem/
2020-10-23T17:51:03,901 Getting page https://pypi.ngc.nvidia.com/rcsb-utils-chem/
2020-10-23T17:51:03,903 Found index url https://pypi.ngc.nvidia.com
2020-10-23T17:51:04,905 Could not fetch URL https://pypi.ngc.nvidia.com/rcsb-utils-chem/: 404 Client Error: Not Found for url: https://developer.download.nvidia.com/compute/redist/rcsb-utils-chem/ - skipping
2020-10-23T17:51:04,943 Given no hashes to check 1 links for project 'rcsb-utils-chem': discarding no candidates
2020-10-23T17:51:04,946 Using version 0.43 (newest of versions: 0.43)
2020-10-23T17:51:04,955 Collecting rcsb-utils-chem==0.43
2020-10-23T17:51:04,960   Created temporary directory: /tmp/pip-unpack-79fxeg13
2020-10-23T17:51:05,186   Downloading rcsb.utils.chem-0.43.tar.gz (65 kB)
2020-10-23T17:51:05,521   Added rcsb-utils-chem==0.43 from https://files.pythonhosted.org/packages/cc/17/dc085272edf1a807b80df64aa51a233b41305b863cf8de95e7b339c45d86/rcsb.utils.chem-0.43.tar.gz#sha256=7a529bde69e6dfaa1951bd9fb185d8cae922668c1c16f9dcbb7f794df2c0a051 to build tracker '/tmp/pip-req-tracker-jr5idg03'
2020-10-23T17:51:05,525     Running setup.py (path:/tmp/pip-wheel-633kpf1e/rcsb-utils-chem/setup.py) egg_info for package rcsb-utils-chem
2020-10-23T17:51:05,527     Created temporary directory: /tmp/pip-pip-egg-info-5ngdc2k2
2020-10-23T17:51:05,528     Running command python setup.py egg_info
2020-10-23T17:51:07,721     running egg_info
2020-10-23T17:51:07,728     creating /tmp/pip-pip-egg-info-5ngdc2k2/rcsb.utils.chem.egg-info
2020-10-23T17:51:07,731     writing /tmp/pip-pip-egg-info-5ngdc2k2/rcsb.utils.chem.egg-info/PKG-INFO
2020-10-23T17:51:07,737     writing entry points to /tmp/pip-pip-egg-info-5ngdc2k2/rcsb.utils.chem.egg-info/entry_points.txt
2020-10-23T17:51:07,739     writing top-level names to /tmp/pip-pip-egg-info-5ngdc2k2/rcsb.utils.chem.egg-info/top_level.txt
2020-10-23T17:51:07,741     writing dependency_links to /tmp/pip-pip-egg-info-5ngdc2k2/rcsb.utils.chem.egg-info/dependency_links.txt
2020-10-23T17:51:07,745     writing requirements to /tmp/pip-pip-egg-info-5ngdc2k2/rcsb.utils.chem.egg-info/requires.txt
2020-10-23T17:51:07,749     writing manifest file '/tmp/pip-pip-egg-info-5ngdc2k2/rcsb.utils.chem.egg-info/SOURCES.txt'
2020-10-23T17:51:08,120     reading manifest file '/tmp/pip-pip-egg-info-5ngdc2k2/rcsb.utils.chem.egg-info/SOURCES.txt'
2020-10-23T17:51:08,124     reading manifest template 'MANIFEST.in'
2020-10-23T17:51:08,132     writing manifest file '/tmp/pip-pip-egg-info-5ngdc2k2/rcsb.utils.chem.egg-info/SOURCES.txt'
2020-10-23T17:51:08,267   Source in /tmp/pip-wheel-633kpf1e/rcsb-utils-chem has version 0.43, which satisfies requirement rcsb-utils-chem==0.43 from https://files.pythonhosted.org/packages/cc/17/dc085272edf1a807b80df64aa51a233b41305b863cf8de95e7b339c45d86/rcsb.utils.chem-0.43.tar.gz#sha256=7a529bde69e6dfaa1951bd9fb185d8cae922668c1c16f9dcbb7f794df2c0a051
2020-10-23T17:51:08,269   Removed rcsb-utils-chem==0.43 from https://files.pythonhosted.org/packages/cc/17/dc085272edf1a807b80df64aa51a233b41305b863cf8de95e7b339c45d86/rcsb.utils.chem-0.43.tar.gz#sha256=7a529bde69e6dfaa1951bd9fb185d8cae922668c1c16f9dcbb7f794df2c0a051 from build tracker '/tmp/pip-req-tracker-jr5idg03'
2020-10-23T17:51:08,273 Building wheels for collected packages: rcsb-utils-chem
2020-10-23T17:51:08,282   Created temporary directory: /tmp/pip-wheel-ym6ju1p_
2020-10-23T17:51:08,283   Building wheel for rcsb-utils-chem (setup.py): started
2020-10-23T17:51:08,284   Destination directory: /tmp/pip-wheel-ym6ju1p_
2020-10-23T17:51:08,285   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-633kpf1e/rcsb-utils-chem/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-633kpf1e/rcsb-utils-chem/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ym6ju1p_
2020-10-23T17:51:10,485   running bdist_wheel
2020-10-23T17:51:10,501   running build
2020-10-23T17:51:10,502   running build_py
2020-10-23T17:51:10,846   creating build
2020-10-23T17:51:10,847   creating build/lib
2020-10-23T17:51:10,848   creating build/lib/rcsb
2020-10-23T17:51:10,851   copying rcsb/__init__.py -> build/lib/rcsb
2020-10-23T17:51:10,857   creating build/lib/rcsb/utils
2020-10-23T17:51:10,859   copying rcsb/utils/__init__.py -> build/lib/rcsb/utils
2020-10-23T17:51:10,866   creating build/lib/rcsb/utils/chem
2020-10-23T17:51:10,869   copying rcsb/utils/chem/ObMoleculeFactory.py -> build/lib/rcsb/utils/chem
2020-10-23T17:51:10,874   copying rcsb/utils/chem/RdMoleculeFactory.py -> build/lib/rcsb/utils/chem
2020-10-23T17:51:10,880   copying rcsb/utils/chem/OeIoUtils.py -> build/lib/rcsb/utils/chem
2020-10-23T17:51:10,887   copying rcsb/utils/chem/IoUtils.py -> build/lib/rcsb/utils/chem
2020-10-23T17:51:10,893   copying rcsb/utils/chem/ChemCompMoleculeProvider.py -> build/lib/rcsb/utils/chem
2020-10-23T17:51:10,899   copying rcsb/utils/chem/OeSearchMoleculeProvider.py -> build/lib/rcsb/utils/chem
2020-10-23T17:51:10,906   copying rcsb/utils/chem/ChemCompSearchIndexProvider.py -> build/lib/rcsb/utils/chem
2020-10-23T17:51:10,914   copying rcsb/utils/chem/OeMoleculeFactory.py -> build/lib/rcsb/utils/chem
2020-10-23T17:51:10,924   copying rcsb/utils/chem/OeDepict.py -> build/lib/rcsb/utils/chem
2020-10-23T17:51:10,930   copying rcsb/utils/chem/ChemCompSearchWrapper.py -> build/lib/rcsb/utils/chem
2020-10-23T17:51:10,937   copying rcsb/utils/chem/ChemCompIndexProvider.py -> build/lib/rcsb/utils/chem
2020-10-23T17:51:10,943   copying rcsb/utils/chem/OeMoleculeProvider.py -> build/lib/rcsb/utils/chem
2020-10-23T17:51:10,949   copying rcsb/utils/chem/CactvsMoleculeFactory.py -> build/lib/rcsb/utils/chem
2020-10-23T17:51:10,954   copying rcsb/utils/chem/OeSubStructSearchUtils.py -> build/lib/rcsb/utils/chem
2020-10-23T17:51:10,960   copying rcsb/utils/chem/cactvsAnnotateMol.py -> build/lib/rcsb/utils/chem
2020-10-23T17:51:10,967   copying rcsb/utils/chem/OeDepictAlign.py -> build/lib/rcsb/utils/chem
2020-10-23T17:51:10,976   copying rcsb/utils/chem/__init__.py -> build/lib/rcsb/utils/chem
2020-10-23T17:51:10,981   copying rcsb/utils/chem/MolecularFormula.py -> build/lib/rcsb/utils/chem
2020-10-23T17:51:10,986   copying rcsb/utils/chem/ChemCompDepictWrapper.py -> build/lib/rcsb/utils/chem
2020-10-23T17:51:10,992   copying rcsb/utils/chem/OeSearchUtils.py -> build/lib/rcsb/utils/chem
2020-10-23T17:51:10,998   copying rcsb/utils/chem/FailList.py -> build/lib/rcsb/utils/chem
2020-10-23T17:51:11,011   copying rcsb/utils/chem/PdbxChemCompConstants.py -> build/lib/rcsb/utils/chem
2020-10-23T17:51:11,016   copying rcsb/utils/chem/MoleculeAnnotationsCompare.py -> build/lib/rcsb/utils/chem
2020-10-23T17:51:11,023   copying rcsb/utils/chem/OeCommonUtils.py -> build/lib/rcsb/utils/chem
2020-10-23T17:51:11,029   copying rcsb/utils/chem/PdbxChemComp.py -> build/lib/rcsb/utils/chem
2020-10-23T17:51:11,061   installing to build/bdist.linux-armv7l/wheel
2020-10-23T17:51:11,062   running install
2020-10-23T17:51:11,064   running install_lib
2020-10-23T17:51:11,072   creating build/bdist.linux-armv7l
2020-10-23T17:51:11,073   creating build/bdist.linux-armv7l/wheel
2020-10-23T17:51:11,077   creating build/bdist.linux-armv7l/wheel/rcsb
2020-10-23T17:51:11,082   creating build/bdist.linux-armv7l/wheel/rcsb/utils
2020-10-23T17:51:11,084   copying build/lib/rcsb/utils/__init__.py -> build/bdist.linux-armv7l/wheel/rcsb/utils
2020-10-23T17:51:11,091   creating build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-23T17:51:11,093   copying build/lib/rcsb/utils/chem/ObMoleculeFactory.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-23T17:51:11,098   copying build/lib/rcsb/utils/chem/RdMoleculeFactory.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-23T17:51:11,104   copying build/lib/rcsb/utils/chem/OeIoUtils.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-23T17:51:11,113   copying build/lib/rcsb/utils/chem/IoUtils.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-23T17:51:11,120   copying build/lib/rcsb/utils/chem/ChemCompMoleculeProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-23T17:51:11,126   copying build/lib/rcsb/utils/chem/OeSearchMoleculeProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-23T17:51:11,131   copying build/lib/rcsb/utils/chem/ChemCompSearchIndexProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-23T17:51:11,138   copying build/lib/rcsb/utils/chem/OeMoleculeFactory.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-23T17:51:11,148   copying build/lib/rcsb/utils/chem/OeDepict.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-23T17:51:11,155   copying build/lib/rcsb/utils/chem/ChemCompSearchWrapper.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-23T17:51:11,164   copying build/lib/rcsb/utils/chem/ChemCompIndexProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-23T17:51:11,170   copying build/lib/rcsb/utils/chem/OeMoleculeProvider.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-23T17:51:11,175   copying build/lib/rcsb/utils/chem/CactvsMoleculeFactory.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-23T17:51:11,180   copying build/lib/rcsb/utils/chem/OeSubStructSearchUtils.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-23T17:51:11,186   copying build/lib/rcsb/utils/chem/cactvsAnnotateMol.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-23T17:51:11,192   copying build/lib/rcsb/utils/chem/OeDepictAlign.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-23T17:51:11,202   copying build/lib/rcsb/utils/chem/__init__.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-23T17:51:11,207   copying build/lib/rcsb/utils/chem/MolecularFormula.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-23T17:51:11,211   copying build/lib/rcsb/utils/chem/ChemCompDepictWrapper.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-23T17:51:11,217   copying build/lib/rcsb/utils/chem/OeSearchUtils.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-23T17:51:11,223   copying build/lib/rcsb/utils/chem/FailList.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-23T17:51:11,237   copying build/lib/rcsb/utils/chem/PdbxChemCompConstants.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-23T17:51:11,243   copying build/lib/rcsb/utils/chem/MoleculeAnnotationsCompare.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-23T17:51:11,249   copying build/lib/rcsb/utils/chem/OeCommonUtils.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-23T17:51:11,254   copying build/lib/rcsb/utils/chem/PdbxChemComp.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/chem
2020-10-23T17:51:11,259   copying build/lib/rcsb/__init__.py -> build/bdist.linux-armv7l/wheel/rcsb
2020-10-23T17:51:11,263   running install_egg_info
2020-10-23T17:51:11,307   running egg_info
2020-10-23T17:51:11,308   writing rcsb.utils.chem.egg-info/PKG-INFO
2020-10-23T17:51:11,313   writing requirements to rcsb.utils.chem.egg-info/requires.txt
2020-10-23T17:51:11,316   writing dependency_links to rcsb.utils.chem.egg-info/dependency_links.txt
2020-10-23T17:51:11,318   writing entry points to rcsb.utils.chem.egg-info/entry_points.txt
2020-10-23T17:51:11,321   writing top-level names to rcsb.utils.chem.egg-info/top_level.txt
2020-10-23T17:51:11,335   reading manifest file 'rcsb.utils.chem.egg-info/SOURCES.txt'
2020-10-23T17:51:11,340   reading manifest template 'MANIFEST.in'
2020-10-23T17:51:11,351   writing manifest file 'rcsb.utils.chem.egg-info/SOURCES.txt'
2020-10-23T17:51:11,354   Copying rcsb.utils.chem.egg-info to build/bdist.linux-armv7l/wheel/rcsb.utils.chem-0.43-py3.5.egg-info
2020-10-23T17:51:11,393   running install_scripts
2020-10-23T17:51:11,606   creating build/bdist.linux-armv7l/wheel/rcsb.utils.chem-0.43.dist-info/WHEEL
2020-10-23T17:51:11,981   Building wheel for rcsb-utils-chem (setup.py): finished with status 'done'
2020-10-23T17:51:11,987   Created wheel for rcsb-utils-chem: filename=rcsb.utils.chem-0.43-py2.py3-none-any.whl size=82497 sha256=006f96295965d768a0ef051e7d30ecccf8daa1d5a77c19dec21b7a5be58bcdb8
2020-10-23T17:51:11,988   Stored in directory: /tmp/pip-ephem-wheel-cache-2wgm7plm/wheels/4d/62/2d/2f9af7abee5fa328bc7c49f0b3bb96e94c372a5dd8fd885bfe
2020-10-23T17:51:11,992 Successfully built rcsb-utils-chem
2020-10-23T17:51:12,012 Removed build tracker: '/tmp/pip-req-tracker-jr5idg03'