2020-10-23T20:22:45,665 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. 2020-10-23T20:22:46,381 Created temporary directory: /tmp/pip-ephem-wheel-cache-cj4ri_qi 2020-10-23T20:22:46,386 Created temporary directory: /tmp/pip-req-tracker-v2sy_75p 2020-10-23T20:22:46,387 Initialized build tracking at /tmp/pip-req-tracker-v2sy_75p 2020-10-23T20:22:46,387 Created build tracker: /tmp/pip-req-tracker-v2sy_75p 2020-10-23T20:22:46,387 Entered build tracker: /tmp/pip-req-tracker-v2sy_75p 2020-10-23T20:22:46,389 Created temporary directory: /tmp/pip-wheel-gzqhsk4r 2020-10-23T20:22:46,409 1 location(s) to search for versions of scipion-em-relion: 2020-10-23T20:22:46,409 * https://pypi.org/simple/scipion-em-relion/ 2020-10-23T20:22:46,410 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-relion/ 2020-10-23T20:22:46,412 Getting page https://pypi.org/simple/scipion-em-relion/ 2020-10-23T20:22:46,416 Found index url https://pypi.org/simple 2020-10-23T20:22:46,759 Found link https://files.pythonhosted.org/packages/05/a2/d5f1ffa8537f36f40b34263047919ae34baccbe64147bc68cc6c3f8777d9/scipion-em-relion-1.0.0.tar.gz#sha256=b12f8f634114a7e3cb0b33d7f6204bc47b8b5bb3815d3855feedbada752368fb (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.0 2020-10-23T20:22:46,761 Found link https://files.pythonhosted.org/packages/48/4b/02aa5c517d8e6db7aa85d26b76f016841c9e34d58e21e04fa23423a9ef06/scipion-em-relion-1.0.1.tar.gz#sha256=6d7d065852276760640e5c6cb90a35fa93e7096556cdd591d015085c4b3a2792 (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.1 2020-10-23T20:22:46,762 Found link https://files.pythonhosted.org/packages/55/7b/90403e2f937a52301e27955b49665b462df0c4ab02da6444c01f3543ae42/scipion-em-relion-1.0.2.tar.gz#sha256=e53dc640184f6e78f8449bd9bf03524820495b8e2eaf219cc558a87da89dbf22 (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.2 2020-10-23T20:22:46,763 Found link https://files.pythonhosted.org/packages/57/e2/3c6741b62688a1b20b159f7efa0139a9573eb17d72d745b3023f2e8a51fd/scipion-em-relion-1.0.3.tar.gz#sha256=5084bfc2edf75de02f0577fe57e3f63de3e20fff862a40525971c5c3682d072a (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.3 2020-10-23T20:22:46,764 Found link https://files.pythonhosted.org/packages/dd/92/ea6e7092b04a7b25c526d2c0e4243183e4146b3cbd85a6950875083a3abb/scipion-em-relion-1.0.4.tar.gz#sha256=d7adc3cc5c1f4f631cd298cea58e8c3ec035902362ba1f875059f2f9b4b58c1b (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.4 2020-10-23T20:22:46,764 Found link https://files.pythonhosted.org/packages/fb/c0/9945e6d60f050b3493b46e980c1feaab668dee0cd15ba2b5030c2875bbf0/scipion-em-relion-1.0.5.tar.gz#sha256=2eeaed3eef32e0a16656bd36e4648aa68d6f3b45e8caa9e9a7af36e3a72b6449 (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.5 2020-10-23T20:22:46,765 Found link https://files.pythonhosted.org/packages/86/87/bfc3ea75b9f88d116bc644ef38d709bc3a1e8cde59fc7af1cd944596713b/scipion-em-relion-1.0.6.tar.gz#sha256=326a1814aa725f2ce3bb40d7cc535d3057f17eac6a8e36232483070d2ac19d26 (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.6 2020-10-23T20:22:46,766 Found link https://files.pythonhosted.org/packages/70/c1/24483e734ce2077d9fb9b1bb370ddf6ec2430e962fc1349e7ab1ac736137/scipion-em-relion-1.0.7.tar.gz#sha256=06becee63db18acc16ae2d22bac5f5c55e495922246f5aea10ffe4f47d40d9f7 (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.7 2020-10-23T20:22:46,767 Found link https://files.pythonhosted.org/packages/1f/82/9f8eb2869092529d10d9d3fbdf685a232eb70971678ee502858c7c4c7e64/scipion-em-relion-1.0.8.tar.gz#sha256=88105eba3688fb98a76d3e9e5343f4688ee191a6e45343b24344e2b9ddb1b754 (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.8 2020-10-23T20:22:46,768 Found link https://files.pythonhosted.org/packages/f2/3f/211e14befe51bb9447e4d024f3e01c48e96049dd00e6ca402e0b2c1e2ac6/scipion-em-relion-1.0.9.tar.gz#sha256=4fc9a904a99fbd81617b29fd9e5f6e15b67c0da5a1ed5519c548985fb0954af4 (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.9 2020-10-23T20:22:46,769 Found link https://files.pythonhosted.org/packages/52/35/ffacafc5bfeeaa67e4f41bb7cff72d0a62924866ebfd565d44ec97f57b7e/scipion-em-relion-3.0.0a1.tar.gz#sha256=ceefcb9d9fe9dec42a2838ae004efc858f589aa0df5c2fd3dd561754a07d9969 (from https://pypi.org/simple/scipion-em-relion/), version: 3.0.0a1 2020-10-23T20:22:46,770 Found link https://files.pythonhosted.org/packages/64/b6/c4d9a3c1c2aa67344f07b6228f53e9e0ebab0fe70fc7516f55eaa0460d68/scipion-em-relion-3.0.0a3.tar.gz#sha256=8accb26c90bfd2965210da73a519217124a0e43bf97e046aca0431f9545e81f4 (from https://pypi.org/simple/scipion-em-relion/), version: 3.0.0a3 2020-10-23T20:22:46,771 Found link https://files.pythonhosted.org/packages/13/d4/100456e9fa33dc38a0b1b5227e351f37c088e576cb3ea18107fb046b2615/scipion-em-relion-3.0.0a4.tar.gz#sha256=6c3166a3000da47d9a72149e9bb67a8e702ae5e03a98b161b3eb104bcffec701 (from https://pypi.org/simple/scipion-em-relion/), version: 3.0.0a4 2020-10-23T20:22:46,772 Found link https://files.pythonhosted.org/packages/19/64/82b66e24e5915acf91cc9d42addb90fd8d6248afaf1c5726e086db0a9700/scipion-em-relion-3.0.0a5.tar.gz#sha256=3505e13ec6415d74268a84fd5140d996bc02970682ad3f3d5dab8ee355ac93c5 (from https://pypi.org/simple/scipion-em-relion/), version: 3.0.0a5 2020-10-23T20:22:46,773 Found link https://files.pythonhosted.org/packages/ec/16/5e1dd00f12159cbcd595e7fa61492be85d6ab9bb1e67d42f2894c688b1e6/scipion-em-relion-3.0.0b1.tar.gz#sha256=43de695bdd99abb6914c9c3749a87f39d92fd3125c1d9ecb5b7298ce671deb83 (from https://pypi.org/simple/scipion-em-relion/), version: 3.0.0b1 2020-10-23T20:22:46,774 Found link https://files.pythonhosted.org/packages/f0/d5/ed0c37467a7da0eed41919c536e67003ea386063732fb6a09c4344a7db5b/scipion-em-relion-3.0.0b2.tar.gz#sha256=20bbc33ec7673a9c8f43a964416d0caf36671d74a8320bcbfb187c160aab74f5 (from https://pypi.org/simple/scipion-em-relion/), version: 3.0.0b2 2020-10-23T20:22:46,775 Found link https://files.pythonhosted.org/packages/cb/7e/ebf83f96c8b01ce4f9460f361a12edc9c894bdcff686b163b39d9ac1e0a8/scipion-em-relion-3.0.0b3.tar.gz#sha256=19b4a505b631952fcafd3ce2d407f93047b3ca747c1f65d7136401a8eff3ea32 (from https://pypi.org/simple/scipion-em-relion/), version: 3.0.0b3 2020-10-23T20:22:46,775 Found link https://files.pythonhosted.org/packages/df/ba/0113da861be1055f4a6d7df17e007c150c6e59971bc965e80a2f6913cfe7/scipion-em-relion-3.0.0b4.tar.gz#sha256=7e8014598a9374e2e99f0a5f2a1ab4a87653574a0a21f2b5f6c2fd75f04ca47c (from https://pypi.org/simple/scipion-em-relion/), version: 3.0.0b4 2020-10-23T20:22:46,793 Given no hashes to check 1 links for project 'scipion-em-relion': discarding no candidates 2020-10-23T20:22:46,795 Using version 3.0.0b4 (newest of versions: 3.0.0b4) 2020-10-23T20:22:46,804 Collecting scipion-em-relion==3.0.0b4 2020-10-23T20:22:46,809 Created temporary directory: /tmp/pip-unpack-qsr967ff 2020-10-23T20:22:47,043 Downloading scipion-em-relion-3.0.0b4.tar.gz (198 kB) 2020-10-23T20:22:47,711 Added scipion-em-relion==3.0.0b4 from https://files.pythonhosted.org/packages/df/ba/0113da861be1055f4a6d7df17e007c150c6e59971bc965e80a2f6913cfe7/scipion-em-relion-3.0.0b4.tar.gz#sha256=7e8014598a9374e2e99f0a5f2a1ab4a87653574a0a21f2b5f6c2fd75f04ca47c to build tracker '/tmp/pip-req-tracker-v2sy_75p' 2020-10-23T20:22:47,714 Running setup.py (path:/tmp/pip-wheel-gzqhsk4r/scipion-em-relion/setup.py) egg_info for package scipion-em-relion 2020-10-23T20:22:47,717 Created temporary directory: /tmp/pip-pip-egg-info-djsddktj 2020-10-23T20:22:47,718 Running command python setup.py egg_info 2020-10-23T20:22:50,145 running egg_info 2020-10-23T20:22:50,152 creating /tmp/pip-pip-egg-info-djsddktj/scipion_em_relion.egg-info 2020-10-23T20:22:50,155 writing top-level names to /tmp/pip-pip-egg-info-djsddktj/scipion_em_relion.egg-info/top_level.txt 2020-10-23T20:22:50,158 writing entry points to /tmp/pip-pip-egg-info-djsddktj/scipion_em_relion.egg-info/entry_points.txt 2020-10-23T20:22:50,160 writing /tmp/pip-pip-egg-info-djsddktj/scipion_em_relion.egg-info/PKG-INFO 2020-10-23T20:22:50,165 writing dependency_links to /tmp/pip-pip-egg-info-djsddktj/scipion_em_relion.egg-info/dependency_links.txt 2020-10-23T20:22:50,169 writing requirements to /tmp/pip-pip-egg-info-djsddktj/scipion_em_relion.egg-info/requires.txt 2020-10-23T20:22:50,174 writing manifest file '/tmp/pip-pip-egg-info-djsddktj/scipion_em_relion.egg-info/SOURCES.txt' 2020-10-23T20:22:50,553 reading manifest file '/tmp/pip-pip-egg-info-djsddktj/scipion_em_relion.egg-info/SOURCES.txt' 2020-10-23T20:22:50,558 reading manifest template 'MANIFEST.in' 2020-10-23T20:22:50,574 writing manifest file '/tmp/pip-pip-egg-info-djsddktj/scipion_em_relion.egg-info/SOURCES.txt' 2020-10-23T20:22:50,716 Source in /tmp/pip-wheel-gzqhsk4r/scipion-em-relion has version 3.0.0b4, which satisfies requirement scipion-em-relion==3.0.0b4 from https://files.pythonhosted.org/packages/df/ba/0113da861be1055f4a6d7df17e007c150c6e59971bc965e80a2f6913cfe7/scipion-em-relion-3.0.0b4.tar.gz#sha256=7e8014598a9374e2e99f0a5f2a1ab4a87653574a0a21f2b5f6c2fd75f04ca47c 2020-10-23T20:22:50,718 Removed scipion-em-relion==3.0.0b4 from https://files.pythonhosted.org/packages/df/ba/0113da861be1055f4a6d7df17e007c150c6e59971bc965e80a2f6913cfe7/scipion-em-relion-3.0.0b4.tar.gz#sha256=7e8014598a9374e2e99f0a5f2a1ab4a87653574a0a21f2b5f6c2fd75f04ca47c from build tracker '/tmp/pip-req-tracker-v2sy_75p' 2020-10-23T20:22:50,723 Building wheels for collected packages: scipion-em-relion 2020-10-23T20:22:50,732 Created temporary directory: /tmp/pip-wheel-3mjrnb_9 2020-10-23T20:22:50,733 Building wheel for scipion-em-relion (setup.py): started 2020-10-23T20:22:50,734 Destination directory: /tmp/pip-wheel-3mjrnb_9 2020-10-23T20:22:50,735 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-gzqhsk4r/scipion-em-relion/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-gzqhsk4r/scipion-em-relion/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-3mjrnb_9 2020-10-23T20:22:53,098 running bdist_wheel 2020-10-23T20:22:53,114 running build 2020-10-23T20:22:53,115 running build_py 2020-10-23T20:22:53,453 creating build 2020-10-23T20:22:53,454 creating build/lib 2020-10-23T20:22:53,455 creating build/lib/relion 2020-10-23T20:22:53,458 copying relion/wizards.py -> build/lib/relion 2020-10-23T20:22:53,465 copying relion/constants.py -> build/lib/relion 2020-10-23T20:22:53,470 copying relion/bibtex.py -> build/lib/relion 2020-10-23T20:22:53,476 copying relion/__init__.py -> build/lib/relion 2020-10-23T20:22:53,483 copying relion/objects.py -> build/lib/relion 2020-10-23T20:22:53,499 creating build/lib/relion/protocols 2020-10-23T20:22:53,502 copying relion/protocols/protocol_reconstruct.py -> build/lib/relion/protocols 2020-10-23T20:22:53,508 copying relion/protocols/protocol_postprocess.py -> build/lib/relion/protocols 2020-10-23T20:22:53,514 copying relion/protocols/protocol_export_ctf.py -> build/lib/relion/protocols 2020-10-23T20:22:53,521 copying relion/protocols/protocol_classify3d.py -> build/lib/relion/protocols 2020-10-23T20:22:53,528 copying relion/protocols/protocol_assign_optic_groups.py -> build/lib/relion/protocols 2020-10-23T20:22:53,535 copying relion/protocols/protocol_subtract.py -> build/lib/relion/protocols 2020-10-23T20:22:53,542 copying relion/protocols/protocol_autopick_ref.py -> build/lib/relion/protocols 2020-10-23T20:22:53,549 copying relion/protocols/protocol_preprocess.py -> build/lib/relion/protocols 2020-10-23T20:22:53,555 copying relion/protocols/protocol_multibody.py -> build/lib/relion/protocols 2020-10-23T20:22:53,563 copying relion/protocols/protocol_initialmodel.py -> build/lib/relion/protocols 2020-10-23T20:22:53,571 copying relion/protocols/protocol_classify2d.py -> build/lib/relion/protocols 2020-10-23T20:22:53,578 copying relion/protocols/protocol_center_averages.py -> build/lib/relion/protocols 2020-10-23T20:22:53,583 copying relion/protocols/protocol_autopick_log.py -> build/lib/relion/protocols 2020-10-23T20:22:53,589 copying relion/protocols/protocol_compress_estimate_gain.py -> build/lib/relion/protocols 2020-10-23T20:22:53,593 copying relion/protocols/__init__.py -> build/lib/relion/protocols 2020-10-23T20:22:53,598 copying relion/protocols/protocol_compress_movies.py -> build/lib/relion/protocols 2020-10-23T20:22:53,605 copying relion/protocols/protocol_sort.py -> build/lib/relion/protocols 2020-10-23T20:22:53,613 copying relion/protocols/protocol_symmetrize_volume.py -> build/lib/relion/protocols 2020-10-23T20:22:53,619 copying relion/protocols/protocol_export_particles.py -> build/lib/relion/protocols 2020-10-23T20:22:53,625 copying relion/protocols/protocol_ctf_refinement.py -> build/lib/relion/protocols 2020-10-23T20:22:53,631 copying relion/protocols/protocol_expand_symmetry.py -> build/lib/relion/protocols 2020-10-23T20:22:53,636 copying relion/protocols/protocol_remove_views.py -> build/lib/relion/protocols 2020-10-23T20:22:53,642 copying relion/protocols/protocol_motioncor.py -> build/lib/relion/protocols 2020-10-23T20:22:53,651 copying relion/protocols/protocol_refine3d.py -> build/lib/relion/protocols 2020-10-23T20:22:53,659 copying relion/protocols/protocol_base.py -> build/lib/relion/protocols 2020-10-23T20:22:53,672 copying relion/protocols/protocol_localres.py -> build/lib/relion/protocols 2020-10-23T20:22:53,679 copying relion/protocols/protocol_autopick.py -> build/lib/relion/protocols 2020-10-23T20:22:53,686 copying relion/protocols/protocol_create_mask3d.py -> build/lib/relion/protocols 2020-10-23T20:22:53,693 copying relion/protocols/protocol_extract_particles.py -> build/lib/relion/protocols 2020-10-23T20:22:53,701 copying relion/protocols/protocol_bayesian_polishing.py -> build/lib/relion/protocols 2020-10-23T20:22:53,708 copying relion/protocols/protocol_export_coords.py -> build/lib/relion/protocols 2020-10-23T20:22:53,714 creating build/lib/relion/viewers 2020-10-23T20:22:53,716 copying relion/viewers/viewer_locres.py -> build/lib/relion/viewers 2020-10-23T20:22:53,722 copying relion/viewers/viewer_sort.py -> build/lib/relion/viewers 2020-10-23T20:22:53,728 copying relion/viewers/viewer_postprocess.py -> build/lib/relion/viewers 2020-10-23T20:22:53,735 copying relion/viewers/viewer_polishing.py -> build/lib/relion/viewers 2020-10-23T20:22:53,742 copying relion/viewers/viewer_ctfrefine.py -> build/lib/relion/viewers 2020-10-23T20:22:53,748 copying relion/viewers/__init__.py -> build/lib/relion/viewers 2020-10-23T20:22:53,752 copying relion/viewers/viewer_base.py -> build/lib/relion/viewers 2020-10-23T20:22:53,761 copying relion/viewers/viewer_motioncor.py -> build/lib/relion/viewers 2020-10-23T20:22:53,770 creating build/lib/relion/convert 2020-10-23T20:22:53,773 copying relion/convert/convert_coordinates.py -> build/lib/relion/convert 2020-10-23T20:22:53,781 copying relion/convert/convert_base.py -> build/lib/relion/convert 2020-10-23T20:22:53,787 copying relion/convert/convert_utils.py -> build/lib/relion/convert 2020-10-23T20:22:53,792 copying relion/convert/__init__.py -> build/lib/relion/convert 2020-10-23T20:22:53,797 copying relion/convert/convert_deprecated.py -> build/lib/relion/convert 2020-10-23T20:22:53,805 copying relion/convert/dataimport.py -> build/lib/relion/convert 2020-10-23T20:22:53,813 copying relion/convert/convert30.py -> build/lib/relion/convert 2020-10-23T20:22:53,820 copying relion/convert/convert31.py -> build/lib/relion/convert 2020-10-23T20:22:53,828 creating build/lib/relion/tests 2020-10-23T20:22:53,831 copying relion/tests/test_convert_relion.py -> build/lib/relion/tests 2020-10-23T20:22:53,839 copying relion/tests/__init__.py -> build/lib/relion/tests 2020-10-23T20:22:53,843 copying relion/tests/test_workflow_relion3.py -> build/lib/relion/tests 2020-10-23T20:22:53,850 copying relion/tests/test_protocols_relion3.py -> build/lib/relion/tests 2020-10-23T20:22:53,858 copying relion/tests/test_protocols_relion.py -> build/lib/relion/tests 2020-10-23T20:22:53,874 copying relion/relion_logo.png -> build/lib/relion 2020-10-23T20:22:53,880 copying relion/protocols.conf -> build/lib/relion 2020-10-23T20:22:53,886 creating build/lib/relion/convert/mtfs 2020-10-23T20:22:53,888 copying relion/convert/mtfs/mtf_f3_300_ec.star -> build/lib/relion/convert/mtfs 2020-10-23T20:22:53,895 copying relion/convert/mtfs/mtf_f3_200_ec.star -> build/lib/relion/convert/mtfs 2020-10-23T20:22:53,902 copying relion/convert/mtfs/mtf_k2_300_ec.star -> build/lib/relion/convert/mtfs 2020-10-23T20:22:53,911 copying relion/convert/mtfs/mtf_f2_300.star -> build/lib/relion/convert/mtfs 2020-10-23T20:22:53,919 copying relion/convert/mtfs/mtf_de20_300.star -> build/lib/relion/convert/mtfs 2020-10-23T20:22:53,955 installing to build/bdist.linux-armv7l/wheel 2020-10-23T20:22:53,956 running install 2020-10-23T20:22:53,958 running install_lib 2020-10-23T20:22:53,966 creating build/bdist.linux-armv7l 2020-10-23T20:22:53,967 creating build/bdist.linux-armv7l/wheel 2020-10-23T20:22:53,971 creating build/bdist.linux-armv7l/wheel/relion 2020-10-23T20:22:53,973 copying build/lib/relion/wizards.py -> build/bdist.linux-armv7l/wheel/relion 2020-10-23T20:22:53,979 copying build/lib/relion/constants.py -> build/bdist.linux-armv7l/wheel/relion 2020-10-23T20:22:53,984 copying build/lib/relion/bibtex.py -> build/bdist.linux-armv7l/wheel/relion 2020-10-23T20:22:53,989 copying build/lib/relion/__init__.py -> build/bdist.linux-armv7l/wheel/relion 2020-10-23T20:22:53,995 copying build/lib/relion/relion_logo.png -> build/bdist.linux-armv7l/wheel/relion 2020-10-23T20:22:54,001 copying build/lib/relion/protocols.conf -> build/bdist.linux-armv7l/wheel/relion 2020-10-23T20:22:54,011 creating build/bdist.linux-armv7l/wheel/relion/protocols 2020-10-23T20:22:54,014 copying build/lib/relion/protocols/protocol_reconstruct.py -> build/bdist.linux-armv7l/wheel/relion/protocols 2020-10-23T20:22:54,021 copying build/lib/relion/protocols/protocol_postprocess.py -> build/bdist.linux-armv7l/wheel/relion/protocols 2020-10-23T20:22:54,028 copying build/lib/relion/protocols/protocol_export_ctf.py -> build/bdist.linux-armv7l/wheel/relion/protocols 2020-10-23T20:22:54,035 copying build/lib/relion/protocols/protocol_classify3d.py -> build/bdist.linux-armv7l/wheel/relion/protocols 2020-10-23T20:22:54,041 copying build/lib/relion/protocols/protocol_assign_optic_groups.py -> build/bdist.linux-armv7l/wheel/relion/protocols 2020-10-23T20:22:54,048 copying build/lib/relion/protocols/protocol_subtract.py -> build/bdist.linux-armv7l/wheel/relion/protocols 2020-10-23T20:22:54,055 copying build/lib/relion/protocols/protocol_autopick_ref.py -> build/bdist.linux-armv7l/wheel/relion/protocols 2020-10-23T20:22:54,064 copying build/lib/relion/protocols/protocol_preprocess.py -> build/bdist.linux-armv7l/wheel/relion/protocols 2020-10-23T20:22:54,071 copying build/lib/relion/protocols/protocol_multibody.py -> build/bdist.linux-armv7l/wheel/relion/protocols 2020-10-23T20:22:54,079 copying build/lib/relion/protocols/protocol_initialmodel.py -> build/bdist.linux-armv7l/wheel/relion/protocols 2020-10-23T20:22:54,087 copying build/lib/relion/protocols/protocol_classify2d.py -> build/bdist.linux-armv7l/wheel/relion/protocols 2020-10-23T20:22:54,093 copying build/lib/relion/protocols/protocol_center_averages.py -> build/bdist.linux-armv7l/wheel/relion/protocols 2020-10-23T20:22:54,099 copying build/lib/relion/protocols/protocol_autopick_log.py -> build/bdist.linux-armv7l/wheel/relion/protocols 2020-10-23T20:22:54,106 copying build/lib/relion/protocols/protocol_compress_estimate_gain.py -> build/bdist.linux-armv7l/wheel/relion/protocols 2020-10-23T20:22:54,113 copying build/lib/relion/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/relion/protocols 2020-10-23T20:22:54,119 copying build/lib/relion/protocols/protocol_compress_movies.py -> build/bdist.linux-armv7l/wheel/relion/protocols 2020-10-23T20:22:54,125 copying build/lib/relion/protocols/protocol_sort.py -> build/bdist.linux-armv7l/wheel/relion/protocols 2020-10-23T20:22:54,133 copying build/lib/relion/protocols/protocol_symmetrize_volume.py -> build/bdist.linux-armv7l/wheel/relion/protocols 2020-10-23T20:22:54,139 copying build/lib/relion/protocols/protocol_export_particles.py -> build/bdist.linux-armv7l/wheel/relion/protocols 2020-10-23T20:22:54,146 copying build/lib/relion/protocols/protocol_ctf_refinement.py -> build/bdist.linux-armv7l/wheel/relion/protocols 2020-10-23T20:22:54,154 copying build/lib/relion/protocols/protocol_expand_symmetry.py -> build/bdist.linux-armv7l/wheel/relion/protocols 2020-10-23T20:22:54,160 copying build/lib/relion/protocols/protocol_remove_views.py -> build/bdist.linux-armv7l/wheel/relion/protocols 2020-10-23T20:22:54,167 copying build/lib/relion/protocols/protocol_motioncor.py -> build/bdist.linux-armv7l/wheel/relion/protocols 2020-10-23T20:22:54,176 copying build/lib/relion/protocols/protocol_refine3d.py -> build/bdist.linux-armv7l/wheel/relion/protocols 2020-10-23T20:22:54,183 copying build/lib/relion/protocols/protocol_base.py -> build/bdist.linux-armv7l/wheel/relion/protocols 2020-10-23T20:22:54,196 copying build/lib/relion/protocols/protocol_localres.py -> build/bdist.linux-armv7l/wheel/relion/protocols 2020-10-23T20:22:54,203 copying build/lib/relion/protocols/protocol_autopick.py -> build/bdist.linux-armv7l/wheel/relion/protocols 2020-10-23T20:22:54,210 copying build/lib/relion/protocols/protocol_create_mask3d.py -> build/bdist.linux-armv7l/wheel/relion/protocols 2020-10-23T20:22:54,217 copying build/lib/relion/protocols/protocol_extract_particles.py -> build/bdist.linux-armv7l/wheel/relion/protocols 2020-10-23T20:22:54,225 copying build/lib/relion/protocols/protocol_bayesian_polishing.py -> build/bdist.linux-armv7l/wheel/relion/protocols 2020-10-23T20:22:54,234 copying build/lib/relion/protocols/protocol_export_coords.py -> build/bdist.linux-armv7l/wheel/relion/protocols 2020-10-23T20:22:54,241 creating build/bdist.linux-armv7l/wheel/relion/viewers 2020-10-23T20:22:54,244 copying build/lib/relion/viewers/viewer_locres.py -> build/bdist.linux-armv7l/wheel/relion/viewers 2020-10-23T20:22:54,251 copying build/lib/relion/viewers/viewer_sort.py -> build/bdist.linux-armv7l/wheel/relion/viewers 2020-10-23T20:22:54,257 copying build/lib/relion/viewers/viewer_postprocess.py -> build/bdist.linux-armv7l/wheel/relion/viewers 2020-10-23T20:22:54,264 copying build/lib/relion/viewers/viewer_polishing.py -> build/bdist.linux-armv7l/wheel/relion/viewers 2020-10-23T20:22:54,270 copying build/lib/relion/viewers/viewer_ctfrefine.py -> build/bdist.linux-armv7l/wheel/relion/viewers 2020-10-23T20:22:54,278 copying build/lib/relion/viewers/__init__.py -> build/bdist.linux-armv7l/wheel/relion/viewers 2020-10-23T20:22:54,284 copying build/lib/relion/viewers/viewer_base.py -> build/bdist.linux-armv7l/wheel/relion/viewers 2020-10-23T20:22:54,294 copying build/lib/relion/viewers/viewer_motioncor.py -> build/bdist.linux-armv7l/wheel/relion/viewers 2020-10-23T20:22:54,303 creating build/bdist.linux-armv7l/wheel/relion/convert 2020-10-23T20:22:54,305 copying build/lib/relion/convert/convert_coordinates.py -> build/bdist.linux-armv7l/wheel/relion/convert 2020-10-23T20:22:54,312 copying build/lib/relion/convert/convert_base.py -> build/bdist.linux-armv7l/wheel/relion/convert 2020-10-23T20:22:54,319 copying build/lib/relion/convert/convert_utils.py -> build/bdist.linux-armv7l/wheel/relion/convert 2020-10-23T20:22:54,325 copying build/lib/relion/convert/__init__.py -> build/bdist.linux-armv7l/wheel/relion/convert 2020-10-23T20:22:54,332 copying build/lib/relion/convert/convert_deprecated.py -> build/bdist.linux-armv7l/wheel/relion/convert 2020-10-23T20:22:54,342 creating build/bdist.linux-armv7l/wheel/relion/convert/mtfs 2020-10-23T20:22:54,345 copying build/lib/relion/convert/mtfs/mtf_f3_300_ec.star -> build/bdist.linux-armv7l/wheel/relion/convert/mtfs 2020-10-23T20:22:54,353 copying build/lib/relion/convert/mtfs/mtf_f3_200_ec.star -> build/bdist.linux-armv7l/wheel/relion/convert/mtfs 2020-10-23T20:22:54,359 copying build/lib/relion/convert/mtfs/mtf_k2_300_ec.star -> build/bdist.linux-armv7l/wheel/relion/convert/mtfs 2020-10-23T20:22:54,365 copying build/lib/relion/convert/mtfs/mtf_f2_300.star -> build/bdist.linux-armv7l/wheel/relion/convert/mtfs 2020-10-23T20:22:54,370 copying build/lib/relion/convert/mtfs/mtf_de20_300.star -> build/bdist.linux-armv7l/wheel/relion/convert/mtfs 2020-10-23T20:22:54,376 copying build/lib/relion/convert/dataimport.py -> build/bdist.linux-armv7l/wheel/relion/convert 2020-10-23T20:22:54,383 copying build/lib/relion/convert/convert30.py -> build/bdist.linux-armv7l/wheel/relion/convert 2020-10-23T20:22:54,391 copying build/lib/relion/convert/convert31.py -> build/bdist.linux-armv7l/wheel/relion/convert 2020-10-23T20:22:54,400 copying build/lib/relion/objects.py -> build/bdist.linux-armv7l/wheel/relion 2020-10-23T20:22:54,409 creating build/bdist.linux-armv7l/wheel/relion/tests 2020-10-23T20:22:54,413 copying build/lib/relion/tests/test_convert_relion.py -> build/bdist.linux-armv7l/wheel/relion/tests 2020-10-23T20:22:54,424 copying build/lib/relion/tests/__init__.py -> build/bdist.linux-armv7l/wheel/relion/tests 2020-10-23T20:22:54,429 copying build/lib/relion/tests/test_workflow_relion3.py -> build/bdist.linux-armv7l/wheel/relion/tests 2020-10-23T20:22:54,435 copying build/lib/relion/tests/test_protocols_relion3.py -> build/bdist.linux-armv7l/wheel/relion/tests 2020-10-23T20:22:54,443 copying build/lib/relion/tests/test_protocols_relion.py -> build/bdist.linux-armv7l/wheel/relion/tests 2020-10-23T20:22:54,456 running install_egg_info 2020-10-23T20:22:54,512 running egg_info 2020-10-23T20:22:54,516 writing requirements to scipion_em_relion.egg-info/requires.txt 2020-10-23T20:22:54,519 writing dependency_links to scipion_em_relion.egg-info/dependency_links.txt 2020-10-23T20:22:54,522 writing scipion_em_relion.egg-info/PKG-INFO 2020-10-23T20:22:54,528 writing top-level names to scipion_em_relion.egg-info/top_level.txt 2020-10-23T20:22:54,531 writing entry points to scipion_em_relion.egg-info/entry_points.txt 2020-10-23T20:22:54,554 reading manifest file 'scipion_em_relion.egg-info/SOURCES.txt' 2020-10-23T20:22:54,562 reading manifest template 'MANIFEST.in' 2020-10-23T20:22:54,582 writing manifest file 'scipion_em_relion.egg-info/SOURCES.txt' 2020-10-23T20:22:54,586 Copying scipion_em_relion.egg-info to build/bdist.linux-armv7l/wheel/scipion_em_relion-3.0.0b4-py3.5.egg-info 2020-10-23T20:22:54,619 running install_scripts 2020-10-23T20:22:54,807 creating build/bdist.linux-armv7l/wheel/scipion_em_relion-3.0.0b4.dist-info/WHEEL 2020-10-23T20:22:55,409 Building wheel for scipion-em-relion (setup.py): finished with status 'done' 2020-10-23T20:22:55,418 Created wheel for scipion-em-relion: filename=scipion_em_relion-3.0.0b4-py3-none-any.whl size=243426 sha256=bb6c055d8ec0bb5961f2612736870a6af03494416ffc491447a0264830ee6bd8 2020-10-23T20:22:55,418 Stored in directory: /tmp/pip-ephem-wheel-cache-cj4ri_qi/wheels/a3/c1/fe/bd98beb1c13262e26c2130d29da328cfa2249316b65475608c 2020-10-23T20:22:55,422 Successfully built scipion-em-relion 2020-10-23T20:22:55,471 Removed build tracker: '/tmp/pip-req-tracker-v2sy_75p'