2020-10-26T20:33:19,248 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2020-10-26T20:33:19,939 Created temporary directory: /tmp/pip-ephem-wheel-cache-ufakinoh
2020-10-26T20:33:19,944 Created temporary directory: /tmp/pip-req-tracker-vh7igq8w
2020-10-26T20:33:19,945 Initialized build tracking at /tmp/pip-req-tracker-vh7igq8w
2020-10-26T20:33:19,945 Created build tracker: /tmp/pip-req-tracker-vh7igq8w
2020-10-26T20:33:19,945 Entered build tracker: /tmp/pip-req-tracker-vh7igq8w
2020-10-26T20:33:19,947 Created temporary directory: /tmp/pip-wheel-f3h22sm8
2020-10-26T20:33:19,963 Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com
2020-10-26T20:33:19,966 2 location(s) to search for versions of scipion-em-relion:
2020-10-26T20:33:19,966 * https://pypi.org/simple/scipion-em-relion/
2020-10-26T20:33:19,966 * https://pypi.ngc.nvidia.com/scipion-em-relion/
2020-10-26T20:33:19,967 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-relion/
2020-10-26T20:33:19,969 Getting page https://pypi.org/simple/scipion-em-relion/
2020-10-26T20:33:19,973 Found index url https://pypi.org/simple
2020-10-26T20:33:20,316   Found link https://files.pythonhosted.org/packages/05/a2/d5f1ffa8537f36f40b34263047919ae34baccbe64147bc68cc6c3f8777d9/scipion-em-relion-1.0.0.tar.gz#sha256=b12f8f634114a7e3cb0b33d7f6204bc47b8b5bb3815d3855feedbada752368fb (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.0
2020-10-26T20:33:20,317   Found link https://files.pythonhosted.org/packages/48/4b/02aa5c517d8e6db7aa85d26b76f016841c9e34d58e21e04fa23423a9ef06/scipion-em-relion-1.0.1.tar.gz#sha256=6d7d065852276760640e5c6cb90a35fa93e7096556cdd591d015085c4b3a2792 (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.1
2020-10-26T20:33:20,318   Found link https://files.pythonhosted.org/packages/55/7b/90403e2f937a52301e27955b49665b462df0c4ab02da6444c01f3543ae42/scipion-em-relion-1.0.2.tar.gz#sha256=e53dc640184f6e78f8449bd9bf03524820495b8e2eaf219cc558a87da89dbf22 (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.2
2020-10-26T20:33:20,319   Found link https://files.pythonhosted.org/packages/57/e2/3c6741b62688a1b20b159f7efa0139a9573eb17d72d745b3023f2e8a51fd/scipion-em-relion-1.0.3.tar.gz#sha256=5084bfc2edf75de02f0577fe57e3f63de3e20fff862a40525971c5c3682d072a (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.3
2020-10-26T20:33:20,320   Found link https://files.pythonhosted.org/packages/dd/92/ea6e7092b04a7b25c526d2c0e4243183e4146b3cbd85a6950875083a3abb/scipion-em-relion-1.0.4.tar.gz#sha256=d7adc3cc5c1f4f631cd298cea58e8c3ec035902362ba1f875059f2f9b4b58c1b (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.4
2020-10-26T20:33:20,321   Found link https://files.pythonhosted.org/packages/fb/c0/9945e6d60f050b3493b46e980c1feaab668dee0cd15ba2b5030c2875bbf0/scipion-em-relion-1.0.5.tar.gz#sha256=2eeaed3eef32e0a16656bd36e4648aa68d6f3b45e8caa9e9a7af36e3a72b6449 (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.5
2020-10-26T20:33:20,322   Found link https://files.pythonhosted.org/packages/86/87/bfc3ea75b9f88d116bc644ef38d709bc3a1e8cde59fc7af1cd944596713b/scipion-em-relion-1.0.6.tar.gz#sha256=326a1814aa725f2ce3bb40d7cc535d3057f17eac6a8e36232483070d2ac19d26 (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.6
2020-10-26T20:33:20,323   Found link https://files.pythonhosted.org/packages/70/c1/24483e734ce2077d9fb9b1bb370ddf6ec2430e962fc1349e7ab1ac736137/scipion-em-relion-1.0.7.tar.gz#sha256=06becee63db18acc16ae2d22bac5f5c55e495922246f5aea10ffe4f47d40d9f7 (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.7
2020-10-26T20:33:20,324   Found link https://files.pythonhosted.org/packages/1f/82/9f8eb2869092529d10d9d3fbdf685a232eb70971678ee502858c7c4c7e64/scipion-em-relion-1.0.8.tar.gz#sha256=88105eba3688fb98a76d3e9e5343f4688ee191a6e45343b24344e2b9ddb1b754 (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.8
2020-10-26T20:33:20,325   Found link https://files.pythonhosted.org/packages/f2/3f/211e14befe51bb9447e4d024f3e01c48e96049dd00e6ca402e0b2c1e2ac6/scipion-em-relion-1.0.9.tar.gz#sha256=4fc9a904a99fbd81617b29fd9e5f6e15b67c0da5a1ed5519c548985fb0954af4 (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.9
2020-10-26T20:33:20,326   Found link https://files.pythonhosted.org/packages/52/35/ffacafc5bfeeaa67e4f41bb7cff72d0a62924866ebfd565d44ec97f57b7e/scipion-em-relion-3.0.0a1.tar.gz#sha256=ceefcb9d9fe9dec42a2838ae004efc858f589aa0df5c2fd3dd561754a07d9969 (from https://pypi.org/simple/scipion-em-relion/), version: 3.0.0a1
2020-10-26T20:33:20,327   Found link https://files.pythonhosted.org/packages/64/b6/c4d9a3c1c2aa67344f07b6228f53e9e0ebab0fe70fc7516f55eaa0460d68/scipion-em-relion-3.0.0a3.tar.gz#sha256=8accb26c90bfd2965210da73a519217124a0e43bf97e046aca0431f9545e81f4 (from https://pypi.org/simple/scipion-em-relion/), version: 3.0.0a3
2020-10-26T20:33:20,328   Found link https://files.pythonhosted.org/packages/13/d4/100456e9fa33dc38a0b1b5227e351f37c088e576cb3ea18107fb046b2615/scipion-em-relion-3.0.0a4.tar.gz#sha256=6c3166a3000da47d9a72149e9bb67a8e702ae5e03a98b161b3eb104bcffec701 (from https://pypi.org/simple/scipion-em-relion/), version: 3.0.0a4
2020-10-26T20:33:20,329   Found link https://files.pythonhosted.org/packages/19/64/82b66e24e5915acf91cc9d42addb90fd8d6248afaf1c5726e086db0a9700/scipion-em-relion-3.0.0a5.tar.gz#sha256=3505e13ec6415d74268a84fd5140d996bc02970682ad3f3d5dab8ee355ac93c5 (from https://pypi.org/simple/scipion-em-relion/), version: 3.0.0a5
2020-10-26T20:33:20,330   Found link https://files.pythonhosted.org/packages/ec/16/5e1dd00f12159cbcd595e7fa61492be85d6ab9bb1e67d42f2894c688b1e6/scipion-em-relion-3.0.0b1.tar.gz#sha256=43de695bdd99abb6914c9c3749a87f39d92fd3125c1d9ecb5b7298ce671deb83 (from https://pypi.org/simple/scipion-em-relion/), version: 3.0.0b1
2020-10-26T20:33:20,331   Found link https://files.pythonhosted.org/packages/f0/d5/ed0c37467a7da0eed41919c536e67003ea386063732fb6a09c4344a7db5b/scipion-em-relion-3.0.0b2.tar.gz#sha256=20bbc33ec7673a9c8f43a964416d0caf36671d74a8320bcbfb187c160aab74f5 (from https://pypi.org/simple/scipion-em-relion/), version: 3.0.0b2
2020-10-26T20:33:20,331   Found link https://files.pythonhosted.org/packages/cb/7e/ebf83f96c8b01ce4f9460f361a12edc9c894bdcff686b163b39d9ac1e0a8/scipion-em-relion-3.0.0b3.tar.gz#sha256=19b4a505b631952fcafd3ce2d407f93047b3ca747c1f65d7136401a8eff3ea32 (from https://pypi.org/simple/scipion-em-relion/), version: 3.0.0b3
2020-10-26T20:33:20,332   Found link https://files.pythonhosted.org/packages/df/ba/0113da861be1055f4a6d7df17e007c150c6e59971bc965e80a2f6913cfe7/scipion-em-relion-3.0.0b4.tar.gz#sha256=7e8014598a9374e2e99f0a5f2a1ab4a87653574a0a21f2b5f6c2fd75f04ca47c (from https://pypi.org/simple/scipion-em-relion/), version: 3.0.0b4
2020-10-26T20:33:20,333   Found link https://files.pythonhosted.org/packages/21/66/6a74704980331392e05eefd194b70733bf9d76a0bef77db0b32e0f7818c3/scipion-em-relion-3.0.0b5.tar.gz#sha256=38e12c823260fd078bdf3de7ccb71725b01370ae56bd6e85e8936c286cc7de76 (from https://pypi.org/simple/scipion-em-relion/), version: 3.0.0b5
2020-10-26T20:33:20,334 Fetching project page and analyzing links: https://pypi.ngc.nvidia.com/scipion-em-relion/
2020-10-26T20:33:20,335 Getting page https://pypi.ngc.nvidia.com/scipion-em-relion/
2020-10-26T20:33:20,338 Found index url https://pypi.ngc.nvidia.com
2020-10-26T20:33:21,329 Could not fetch URL https://pypi.ngc.nvidia.com/scipion-em-relion/: 404 Client Error: Not Found for url: https://developer.download.nvidia.com/compute/redist/scipion-em-relion/ - skipping
2020-10-26T20:33:21,352 Given no hashes to check 1 links for project 'scipion-em-relion': discarding no candidates
2020-10-26T20:33:21,354 Using version 3.0.0b5 (newest of versions: 3.0.0b5)
2020-10-26T20:33:21,362 Collecting scipion-em-relion==3.0.0b5
2020-10-26T20:33:21,368   Created temporary directory: /tmp/pip-unpack-qs5tbbqa
2020-10-26T20:33:21,599   Downloading scipion-em-relion-3.0.0b5.tar.gz (198 kB)
2020-10-26T20:33:22,284   Added scipion-em-relion==3.0.0b5 from https://files.pythonhosted.org/packages/21/66/6a74704980331392e05eefd194b70733bf9d76a0bef77db0b32e0f7818c3/scipion-em-relion-3.0.0b5.tar.gz#sha256=38e12c823260fd078bdf3de7ccb71725b01370ae56bd6e85e8936c286cc7de76 to build tracker '/tmp/pip-req-tracker-vh7igq8w'
2020-10-26T20:33:22,288     Running setup.py (path:/tmp/pip-wheel-f3h22sm8/scipion-em-relion/setup.py) egg_info for package scipion-em-relion
2020-10-26T20:33:22,290     Created temporary directory: /tmp/pip-pip-egg-info-glwrjbkk
2020-10-26T20:33:22,292     Running command python setup.py egg_info
2020-10-26T20:33:24,451     running egg_info
2020-10-26T20:33:24,457     creating /tmp/pip-pip-egg-info-glwrjbkk/scipion_em_relion.egg-info
2020-10-26T20:33:24,459     writing entry points to /tmp/pip-pip-egg-info-glwrjbkk/scipion_em_relion.egg-info/entry_points.txt
2020-10-26T20:33:24,462     writing requirements to /tmp/pip-pip-egg-info-glwrjbkk/scipion_em_relion.egg-info/requires.txt
2020-10-26T20:33:24,465     writing top-level names to /tmp/pip-pip-egg-info-glwrjbkk/scipion_em_relion.egg-info/top_level.txt
2020-10-26T20:33:24,468     writing /tmp/pip-pip-egg-info-glwrjbkk/scipion_em_relion.egg-info/PKG-INFO
2020-10-26T20:33:24,474     writing dependency_links to /tmp/pip-pip-egg-info-glwrjbkk/scipion_em_relion.egg-info/dependency_links.txt
2020-10-26T20:33:24,478     writing manifest file '/tmp/pip-pip-egg-info-glwrjbkk/scipion_em_relion.egg-info/SOURCES.txt'
2020-10-26T20:33:24,847     reading manifest file '/tmp/pip-pip-egg-info-glwrjbkk/scipion_em_relion.egg-info/SOURCES.txt'
2020-10-26T20:33:24,851     reading manifest template 'MANIFEST.in'
2020-10-26T20:33:24,867     writing manifest file '/tmp/pip-pip-egg-info-glwrjbkk/scipion_em_relion.egg-info/SOURCES.txt'
2020-10-26T20:33:25,002   Source in /tmp/pip-wheel-f3h22sm8/scipion-em-relion has version 3.0.0b5, which satisfies requirement scipion-em-relion==3.0.0b5 from https://files.pythonhosted.org/packages/21/66/6a74704980331392e05eefd194b70733bf9d76a0bef77db0b32e0f7818c3/scipion-em-relion-3.0.0b5.tar.gz#sha256=38e12c823260fd078bdf3de7ccb71725b01370ae56bd6e85e8936c286cc7de76
2020-10-26T20:33:25,004   Removed scipion-em-relion==3.0.0b5 from https://files.pythonhosted.org/packages/21/66/6a74704980331392e05eefd194b70733bf9d76a0bef77db0b32e0f7818c3/scipion-em-relion-3.0.0b5.tar.gz#sha256=38e12c823260fd078bdf3de7ccb71725b01370ae56bd6e85e8936c286cc7de76 from build tracker '/tmp/pip-req-tracker-vh7igq8w'
2020-10-26T20:33:25,009 Building wheels for collected packages: scipion-em-relion
2020-10-26T20:33:25,019   Created temporary directory: /tmp/pip-wheel-vlkqy8v_
2020-10-26T20:33:25,020   Building wheel for scipion-em-relion (setup.py): started
2020-10-26T20:33:25,021   Destination directory: /tmp/pip-wheel-vlkqy8v_
2020-10-26T20:33:25,021   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-f3h22sm8/scipion-em-relion/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-f3h22sm8/scipion-em-relion/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-vlkqy8v_
2020-10-26T20:33:27,143   running bdist_wheel
2020-10-26T20:33:27,159   running build
2020-10-26T20:33:27,160   running build_py
2020-10-26T20:33:27,499   creating build
2020-10-26T20:33:27,500   creating build/lib
2020-10-26T20:33:27,501   creating build/lib/relion
2020-10-26T20:33:27,504   copying relion/constants.py -> build/lib/relion
2020-10-26T20:33:27,510   copying relion/objects.py -> build/lib/relion
2020-10-26T20:33:27,515   copying relion/__init__.py -> build/lib/relion
2020-10-26T20:33:27,520   copying relion/wizards.py -> build/lib/relion
2020-10-26T20:33:27,526   copying relion/bibtex.py -> build/lib/relion
2020-10-26T20:33:27,541   creating build/lib/relion/protocols
2020-10-26T20:33:27,544   copying relion/protocols/protocol_export_ctf.py -> build/lib/relion/protocols
2020-10-26T20:33:27,551   copying relion/protocols/protocol_base.py -> build/lib/relion/protocols
2020-10-26T20:33:27,562   copying relion/protocols/protocol_refine3d.py -> build/lib/relion/protocols
2020-10-26T20:33:27,567   copying relion/protocols/protocol_export_particles.py -> build/lib/relion/protocols
2020-10-26T20:33:27,574   copying relion/protocols/protocol_postprocess.py -> build/lib/relion/protocols
2020-10-26T20:33:27,582   copying relion/protocols/protocol_motioncor.py -> build/lib/relion/protocols
2020-10-26T20:33:27,591   copying relion/protocols/protocol_subtract.py -> build/lib/relion/protocols
2020-10-26T20:33:27,598   copying relion/protocols/protocol_autopick_log.py -> build/lib/relion/protocols
2020-10-26T20:33:27,604   copying relion/protocols/protocol_initialmodel.py -> build/lib/relion/protocols
2020-10-26T20:33:27,613   copying relion/protocols/protocol_bayesian_polishing.py -> build/lib/relion/protocols
2020-10-26T20:33:27,621   copying relion/protocols/protocol_assign_optic_groups.py -> build/lib/relion/protocols
2020-10-26T20:33:27,629   copying relion/protocols/protocol_center_averages.py -> build/lib/relion/protocols
2020-10-26T20:33:27,634   copying relion/protocols/protocol_classify3d.py -> build/lib/relion/protocols
2020-10-26T20:33:27,639   copying relion/protocols/protocol_remove_views.py -> build/lib/relion/protocols
2020-10-26T20:33:27,645   copying relion/protocols/protocol_sort.py -> build/lib/relion/protocols
2020-10-26T20:33:27,651   copying relion/protocols/protocol_symmetrize_volume.py -> build/lib/relion/protocols
2020-10-26T20:33:27,657   copying relion/protocols/protocol_create_mask3d.py -> build/lib/relion/protocols
2020-10-26T20:33:27,664   copying relion/protocols/protocol_reconstruct.py -> build/lib/relion/protocols
2020-10-26T20:33:27,671   copying relion/protocols/protocol_classify2d.py -> build/lib/relion/protocols
2020-10-26T20:33:27,678   copying relion/protocols/protocol_autopick.py -> build/lib/relion/protocols
2020-10-26T20:33:27,685   copying relion/protocols/protocol_export_coords.py -> build/lib/relion/protocols
2020-10-26T20:33:27,691   copying relion/protocols/protocol_localres.py -> build/lib/relion/protocols
2020-10-26T20:33:27,698   copying relion/protocols/__init__.py -> build/lib/relion/protocols
2020-10-26T20:33:27,704   copying relion/protocols/protocol_preprocess.py -> build/lib/relion/protocols
2020-10-26T20:33:27,711   copying relion/protocols/protocol_expand_symmetry.py -> build/lib/relion/protocols
2020-10-26T20:33:27,718   copying relion/protocols/protocol_compress_estimate_gain.py -> build/lib/relion/protocols
2020-10-26T20:33:27,725   copying relion/protocols/protocol_ctf_refinement.py -> build/lib/relion/protocols
2020-10-26T20:33:27,733   copying relion/protocols/protocol_autopick_ref.py -> build/lib/relion/protocols
2020-10-26T20:33:27,742   copying relion/protocols/protocol_multibody.py -> build/lib/relion/protocols
2020-10-26T20:33:27,751   copying relion/protocols/protocol_extract_particles.py -> build/lib/relion/protocols
2020-10-26T20:33:27,758   copying relion/protocols/protocol_compress_movies.py -> build/lib/relion/protocols
2020-10-26T20:33:27,765   creating build/lib/relion/convert
2020-10-26T20:33:27,768   copying relion/convert/convert_utils.py -> build/lib/relion/convert
2020-10-26T20:33:27,774   copying relion/convert/convert31.py -> build/lib/relion/convert
2020-10-26T20:33:27,782   copying relion/convert/convert30.py -> build/lib/relion/convert
2020-10-26T20:33:27,789   copying relion/convert/convert_coordinates.py -> build/lib/relion/convert
2020-10-26T20:33:27,796   copying relion/convert/dataimport.py -> build/lib/relion/convert
2020-10-26T20:33:27,804   copying relion/convert/convert_base.py -> build/lib/relion/convert
2020-10-26T20:33:27,812   copying relion/convert/convert_deprecated.py -> build/lib/relion/convert
2020-10-26T20:33:27,820   copying relion/convert/__init__.py -> build/lib/relion/convert
2020-10-26T20:33:27,829   creating build/lib/relion/tests
2020-10-26T20:33:27,832   copying relion/tests/test_protocols_relion3.py -> build/lib/relion/tests
2020-10-26T20:33:27,840   copying relion/tests/test_convert_relion.py -> build/lib/relion/tests
2020-10-26T20:33:27,848   copying relion/tests/test_workflow_relion3.py -> build/lib/relion/tests
2020-10-26T20:33:27,854   copying relion/tests/test_protocols_relion.py -> build/lib/relion/tests
2020-10-26T20:33:27,866   copying relion/tests/__init__.py -> build/lib/relion/tests
2020-10-26T20:33:27,875   creating build/lib/relion/viewers
2020-10-26T20:33:27,878   copying relion/viewers/viewer_motioncor.py -> build/lib/relion/viewers
2020-10-26T20:33:27,886   copying relion/viewers/viewer_locres.py -> build/lib/relion/viewers
2020-10-26T20:33:27,893   copying relion/viewers/viewer_postprocess.py -> build/lib/relion/viewers
2020-10-26T20:33:27,901   copying relion/viewers/viewer_polishing.py -> build/lib/relion/viewers
2020-10-26T20:33:27,908   copying relion/viewers/viewer_base.py -> build/lib/relion/viewers
2020-10-26T20:33:27,920   copying relion/viewers/__init__.py -> build/lib/relion/viewers
2020-10-26T20:33:27,927   copying relion/viewers/viewer_ctfrefine.py -> build/lib/relion/viewers
2020-10-26T20:33:27,937   copying relion/viewers/viewer_sort.py -> build/lib/relion/viewers
2020-10-26T20:33:27,951   copying relion/relion_logo.png -> build/lib/relion
2020-10-26T20:33:27,959   copying relion/protocols.conf -> build/lib/relion
2020-10-26T20:33:27,966   creating build/lib/relion/convert/mtfs
2020-10-26T20:33:27,969   copying relion/convert/mtfs/mtf_f3_200_ec.star -> build/lib/relion/convert/mtfs
2020-10-26T20:33:27,976   copying relion/convert/mtfs/mtf_de20_300.star -> build/lib/relion/convert/mtfs
2020-10-26T20:33:27,985   copying relion/convert/mtfs/mtf_f2_300.star -> build/lib/relion/convert/mtfs
2020-10-26T20:33:27,994   copying relion/convert/mtfs/mtf_f3_300_ec.star -> build/lib/relion/convert/mtfs
2020-10-26T20:33:28,000   copying relion/convert/mtfs/mtf_k2_300_ec.star -> build/lib/relion/convert/mtfs
2020-10-26T20:33:28,032   installing to build/bdist.linux-armv7l/wheel
2020-10-26T20:33:28,033   running install
2020-10-26T20:33:28,035   running install_lib
2020-10-26T20:33:28,043   creating build/bdist.linux-armv7l
2020-10-26T20:33:28,044   creating build/bdist.linux-armv7l/wheel
2020-10-26T20:33:28,048   creating build/bdist.linux-armv7l/wheel/relion
2020-10-26T20:33:28,053   creating build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-26T20:33:28,055   copying build/lib/relion/protocols/protocol_export_ctf.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-26T20:33:28,061   copying build/lib/relion/protocols/protocol_base.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-26T20:33:28,074   copying build/lib/relion/protocols/protocol_refine3d.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-26T20:33:28,081   copying build/lib/relion/protocols/protocol_export_particles.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-26T20:33:28,088   copying build/lib/relion/protocols/protocol_postprocess.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-26T20:33:28,095   copying build/lib/relion/protocols/protocol_motioncor.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-26T20:33:28,104   copying build/lib/relion/protocols/protocol_subtract.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-26T20:33:28,111   copying build/lib/relion/protocols/protocol_autopick_log.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-26T20:33:28,118   copying build/lib/relion/protocols/protocol_initialmodel.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-26T20:33:28,125   copying build/lib/relion/protocols/protocol_bayesian_polishing.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-26T20:33:28,132   copying build/lib/relion/protocols/protocol_assign_optic_groups.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-26T20:33:28,138   copying build/lib/relion/protocols/protocol_center_averages.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-26T20:33:28,142   copying build/lib/relion/protocols/protocol_classify3d.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-26T20:33:28,149   copying build/lib/relion/protocols/protocol_remove_views.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-26T20:33:28,156   copying build/lib/relion/protocols/protocol_sort.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-26T20:33:28,164   copying build/lib/relion/protocols/protocol_symmetrize_volume.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-26T20:33:28,170   copying build/lib/relion/protocols/protocol_create_mask3d.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-26T20:33:28,178   copying build/lib/relion/protocols/protocol_reconstruct.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-26T20:33:28,185   copying build/lib/relion/protocols/protocol_classify2d.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-26T20:33:28,191   copying build/lib/relion/protocols/protocol_autopick.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-26T20:33:28,198   copying build/lib/relion/protocols/protocol_export_coords.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-26T20:33:28,204   copying build/lib/relion/protocols/protocol_localres.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-26T20:33:28,211   copying build/lib/relion/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-26T20:33:28,217   copying build/lib/relion/protocols/protocol_preprocess.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-26T20:33:28,225   copying build/lib/relion/protocols/protocol_expand_symmetry.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-26T20:33:28,231   copying build/lib/relion/protocols/protocol_compress_estimate_gain.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-26T20:33:28,238   copying build/lib/relion/protocols/protocol_ctf_refinement.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-26T20:33:28,246   copying build/lib/relion/protocols/protocol_autopick_ref.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-26T20:33:28,255   copying build/lib/relion/protocols/protocol_multibody.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-26T20:33:28,262   copying build/lib/relion/protocols/protocol_extract_particles.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-26T20:33:28,271   copying build/lib/relion/protocols/protocol_compress_movies.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2020-10-26T20:33:28,277   copying build/lib/relion/relion_logo.png -> build/bdist.linux-armv7l/wheel/relion
2020-10-26T20:33:28,284   copying build/lib/relion/constants.py -> build/bdist.linux-armv7l/wheel/relion
2020-10-26T20:33:28,292   creating build/bdist.linux-armv7l/wheel/relion/convert
2020-10-26T20:33:28,295   copying build/lib/relion/convert/convert_utils.py -> build/bdist.linux-armv7l/wheel/relion/convert
2020-10-26T20:33:28,302   copying build/lib/relion/convert/convert31.py -> build/bdist.linux-armv7l/wheel/relion/convert
2020-10-26T20:33:28,310   copying build/lib/relion/convert/convert30.py -> build/bdist.linux-armv7l/wheel/relion/convert
2020-10-26T20:33:28,317   copying build/lib/relion/convert/convert_coordinates.py -> build/bdist.linux-armv7l/wheel/relion/convert
2020-10-26T20:33:28,323   copying build/lib/relion/convert/dataimport.py -> build/bdist.linux-armv7l/wheel/relion/convert
2020-10-26T20:33:28,331   copying build/lib/relion/convert/convert_base.py -> build/bdist.linux-armv7l/wheel/relion/convert
2020-10-26T20:33:28,338   copying build/lib/relion/convert/convert_deprecated.py -> build/bdist.linux-armv7l/wheel/relion/convert
2020-10-26T20:33:28,346   copying build/lib/relion/convert/__init__.py -> build/bdist.linux-armv7l/wheel/relion/convert
2020-10-26T20:33:28,353   creating build/bdist.linux-armv7l/wheel/relion/convert/mtfs
2020-10-26T20:33:28,355   copying build/lib/relion/convert/mtfs/mtf_f3_200_ec.star -> build/bdist.linux-armv7l/wheel/relion/convert/mtfs
2020-10-26T20:33:28,359   copying build/lib/relion/convert/mtfs/mtf_de20_300.star -> build/bdist.linux-armv7l/wheel/relion/convert/mtfs
2020-10-26T20:33:28,365   copying build/lib/relion/convert/mtfs/mtf_f2_300.star -> build/bdist.linux-armv7l/wheel/relion/convert/mtfs
2020-10-26T20:33:28,372   copying build/lib/relion/convert/mtfs/mtf_f3_300_ec.star -> build/bdist.linux-armv7l/wheel/relion/convert/mtfs
2020-10-26T20:33:28,377   copying build/lib/relion/convert/mtfs/mtf_k2_300_ec.star -> build/bdist.linux-armv7l/wheel/relion/convert/mtfs
2020-10-26T20:33:28,385   copying build/lib/relion/protocols.conf -> build/bdist.linux-armv7l/wheel/relion
2020-10-26T20:33:28,391   copying build/lib/relion/objects.py -> build/bdist.linux-armv7l/wheel/relion
2020-10-26T20:33:28,400   creating build/bdist.linux-armv7l/wheel/relion/tests
2020-10-26T20:33:28,402   copying build/lib/relion/tests/test_protocols_relion3.py -> build/bdist.linux-armv7l/wheel/relion/tests
2020-10-26T20:33:28,410   copying build/lib/relion/tests/test_convert_relion.py -> build/bdist.linux-armv7l/wheel/relion/tests
2020-10-26T20:33:28,420   copying build/lib/relion/tests/test_workflow_relion3.py -> build/bdist.linux-armv7l/wheel/relion/tests
2020-10-26T20:33:28,427   copying build/lib/relion/tests/test_protocols_relion.py -> build/bdist.linux-armv7l/wheel/relion/tests
2020-10-26T20:33:28,439   copying build/lib/relion/tests/__init__.py -> build/bdist.linux-armv7l/wheel/relion/tests
2020-10-26T20:33:28,445   copying build/lib/relion/__init__.py -> build/bdist.linux-armv7l/wheel/relion
2020-10-26T20:33:28,451   copying build/lib/relion/wizards.py -> build/bdist.linux-armv7l/wheel/relion
2020-10-26T20:33:28,460   creating build/bdist.linux-armv7l/wheel/relion/viewers
2020-10-26T20:33:28,463   copying build/lib/relion/viewers/viewer_motioncor.py -> build/bdist.linux-armv7l/wheel/relion/viewers
2020-10-26T20:33:28,470   copying build/lib/relion/viewers/viewer_locres.py -> build/bdist.linux-armv7l/wheel/relion/viewers
2020-10-26T20:33:28,475   copying build/lib/relion/viewers/viewer_postprocess.py -> build/bdist.linux-armv7l/wheel/relion/viewers
2020-10-26T20:33:28,481   copying build/lib/relion/viewers/viewer_polishing.py -> build/bdist.linux-armv7l/wheel/relion/viewers
2020-10-26T20:33:28,486   copying build/lib/relion/viewers/viewer_base.py -> build/bdist.linux-armv7l/wheel/relion/viewers
2020-10-26T20:33:28,496   copying build/lib/relion/viewers/__init__.py -> build/bdist.linux-armv7l/wheel/relion/viewers
2020-10-26T20:33:28,502   copying build/lib/relion/viewers/viewer_ctfrefine.py -> build/bdist.linux-armv7l/wheel/relion/viewers
2020-10-26T20:33:28,510   copying build/lib/relion/viewers/viewer_sort.py -> build/bdist.linux-armv7l/wheel/relion/viewers
2020-10-26T20:33:28,516   copying build/lib/relion/bibtex.py -> build/bdist.linux-armv7l/wheel/relion
2020-10-26T20:33:28,522   running install_egg_info
2020-10-26T20:33:28,571   running egg_info
2020-10-26T20:33:28,573   writing requirements to scipion_em_relion.egg-info/requires.txt
2020-10-26T20:33:28,576   writing top-level names to scipion_em_relion.egg-info/top_level.txt
2020-10-26T20:33:28,578   writing dependency_links to scipion_em_relion.egg-info/dependency_links.txt
2020-10-26T20:33:28,581   writing scipion_em_relion.egg-info/PKG-INFO
2020-10-26T20:33:28,586   writing entry points to scipion_em_relion.egg-info/entry_points.txt
2020-10-26T20:33:28,616   reading manifest file 'scipion_em_relion.egg-info/SOURCES.txt'
2020-10-26T20:33:28,623   reading manifest template 'MANIFEST.in'
2020-10-26T20:33:28,642   writing manifest file 'scipion_em_relion.egg-info/SOURCES.txt'
2020-10-26T20:33:28,646   Copying scipion_em_relion.egg-info to build/bdist.linux-armv7l/wheel/scipion_em_relion-3.0.0b5-py3.5.egg-info
2020-10-26T20:33:28,675   running install_scripts
2020-10-26T20:33:28,896   creating build/bdist.linux-armv7l/wheel/scipion_em_relion-3.0.0b5.dist-info/WHEEL
2020-10-26T20:33:29,505   Building wheel for scipion-em-relion (setup.py): finished with status 'done'
2020-10-26T20:33:29,513   Created wheel for scipion-em-relion: filename=scipion_em_relion-3.0.0b5-py3-none-any.whl size=243542 sha256=ff8f67e8ad6d8380f5f525ffe977717762bc3a6bbc6ff11aaaf40d06862f16c6
2020-10-26T20:33:29,515   Stored in directory: /tmp/pip-ephem-wheel-cache-ufakinoh/wheels/2d/70/23/7046d2a08526283cb898af687175d338fb3c89916928d56a8a
2020-10-26T20:33:29,519 Successfully built scipion-em-relion
2020-10-26T20:33:29,568 Removed build tracker: '/tmp/pip-req-tracker-vh7igq8w'